BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644698|ref|NP_206868.1| urease accessory protein
(ureG) [Helicobacter pylori 26695]
(199 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 398 e-113
ref|NP_223555.1| Hydrogenase expression/formation protein [... 54 3e-09
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 29 0.099
ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [... 28 0.13
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 28 0.17
ref|NP_223372.1| putative [Helicobacter pylori J99] 28 0.17
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 27 0.49
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 26 0.64
ref|NP_223491.1| putative [Helicobacter pylori J99] 26 0.64
ref|NP_223192.1| cag island protein, DNA transfer protein [... 26 0.83
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 25 1.4
ref|NP_223617.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 24 3.2
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 23 4.1
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 23 4.1
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Heli... 23 7.1
ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99] 23 7.1
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 22 9.2
ref|NP_223117.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 22 9.2
>ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 199
Score = 398 bits (1022), Expect = e-113
Identities = 198/199 (99%), Positives = 199/199 (99%)
Query: 1 MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIG 60
MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPR+RIIG
Sbjct: 1 MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIG 60
Query: 61 VETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVI 120
VETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVI
Sbjct: 61 VETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVI 120
Query: 121 DVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRA 180
DVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRA
Sbjct: 121 DVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRA 180
Query: 181 KEGLDDVIAWIKRNALLED 199
KEGLDDVIAWIKRNALLED
Sbjct: 181 KEGLDDVIAWIKRNALLED 199
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 53.9 bits (128), Expect = 3e-09
Identities = 49/190 (25%), Positives = 85/190 (43%), Gaps = 17/190 (8%)
Query: 11 GSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGVETGGCPHTA 70
GSGKT ++E L KD+ V+ D+ T DA+ + K V + + TG H
Sbjct: 56 GSGKTTMLENLADF--KDFKFCVVEGDLQTNRDADRLRKKGVSAHQ----ITTGEACHL- 108
Query: 71 IREDASMNLEAVEEM--HGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKI 128
+ASM A + + G + L+IE+ G+ + + A I ++ V EGD
Sbjct: 109 ---EASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDK 165
Query: 129 PRKGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVI 188
K +D ++I+K D+ + ++ D +K++ E P + + + L+D
Sbjct: 166 VLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDF- 224
Query: 189 AWIKRNALLE 198
+N LLE
Sbjct: 225 ----KNFLLE 230
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 28.9 bits (63), Expect = 0.099
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 8 GPVGSGKTALIEALTRHMSKDY---DMAVITNDIYTKEDAE 45
GP GSGKT + + L +H+ D +T Y ED E
Sbjct: 155 GPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVE 195
>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
Length = 1085
Score = 28.5 bits (62), Expect = 0.13
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 4/48 (8%)
Query: 14 KTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGV 61
K+ ++ +S DYD T+D E F C S++ RER+ G+
Sbjct: 594 KSVMLNCNPETVSTDYD----TSDTLYFEPIHFECVKSIIQRERVDGI 637
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 28.1 bits (61), Expect = 0.17
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 6 VCGPVGSGKTALIEALTRHMSKDYDMAVITND 37
+ G GSGK+ I L ++ YDM+V+ D
Sbjct: 266 IIGSTGSGKSTFISFLIANLLTKYDMSVVALD 297
>ref|NP_223372.1| putative [Helicobacter pylori J99]
Length = 133
Score = 28.1 bits (61), Expect = 0.17
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 8 GPVGSGKTALIEALTRHMSKD 28
G VGSGKT L++A +H+ D
Sbjct: 28 GVVGSGKTTLVQACLKHLGLD 48
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 26.6 bits (57), Expect = 0.49
Identities = 25/93 (26%), Positives = 45/93 (47%), Gaps = 10/93 (10%)
Query: 8 GPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGVETGGCP 67
GP G GKT L + L +++ ++ D+ ++A + K P +G E GG
Sbjct: 484 GPSGVGKTELAKELALNLNLHFERF----DMSEYKEAHSVAKLIGSP-SGYVGFEQGGLL 538
Query: 68 HTAIRE--DASMNLEAVEEMHGRFPNLELLLIE 98
AI++ + L+ +E+ H PN+ LL++
Sbjct: 539 VNAIKKHPHCLLLLDEIEKAH---PNVYDLLLQ 568
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 26.2 bits (56), Expect = 0.64
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 175 FTNIRAKEGLDDVIAWIKRNALLE 198
F N+ E D V+A +K NALLE
Sbjct: 313 FENLERLEARDKVVAALKENALLE 336
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 26.2 bits (56), Expect = 0.64
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 1 MVKIGVCGPVGSGKTALIEALTR 23
++++G+ G V GK++L+ ALT+
Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTK 222
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 25.8 bits (55), Expect = 0.83
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 6 VCGPVGSGKTALIEALTRHMSKD 28
VCG GSGKT I+++ + K+
Sbjct: 176 VCGGTGSGKTTYIKSIMEFIPKE 198
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 228
Score = 25.0 bits (53), Expect = 1.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 4 IGVCGPVGSGKTALIEAL 21
IG+ GP G+GKT L++ L
Sbjct: 31 IGLLGPNGAGKTTLLKIL 48
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.3 bits (51), Expect = 2.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 2 VKIGVCGPVGSGKTALIEAL 21
+K+G+ G V +GK++L+ AL
Sbjct: 55 LKVGIIGHVKAGKSSLLNAL 74
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 23.9 bits (50), Expect = 3.2
Identities = 8/26 (30%), Positives = 17/26 (64%)
Query: 156 DLKVMERDSKKMRGEKPFIFTNIRAK 181
D ++ +R + M+ +KPF+F ++ K
Sbjct: 102 DYRLYQRMERAMKFKKPFLFKGVKNK 127
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 23.5 bits (49), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 6 VCGPVGSGKTALIEALTRHMSKD 28
+ G SGKT+L+ AL ++KD
Sbjct: 143 ISGETSSGKTSLLNALLDCVNKD 165
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 23.5 bits (49), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSKD 28
KI + GP G GK+ L + L + D
Sbjct: 349 KIALIGPNGVGKSTLCKILVEELKPD 374
Score = 22.3 bits (46), Expect = 9.2
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 3 KIGVCGPVGSGKTALIEALTRH---------MSKDYDMAVITNDIYTKEDAEFMCKNSVM 53
+ G+ G G+GK+ ++ L++ ++ M V+ D Y ED K++V+
Sbjct: 29 RYGLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMRMGVLGQDQYAFEDLSL--KDAVL 86
Query: 54 PRERIIGVETGGCPHTAIREDASMNLE---AVEEMHGRFPNLELLLIE 98
R + + AI+E + E + ++++ R LE + +E
Sbjct: 87 IGNRRL--------YDAIKEKERLYTEGDLSDDKVNARLGELETICVE 126
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.5 bits (49), Expect = 4.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 27 KDYDMAVITNDIYTKEDAEF 46
KDY +A IT D++ + EF
Sbjct: 640 KDYKIADITKDMFNPDSKEF 659
>ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Helicobacter pylori J99]
Length = 346
Score = 22.7 bits (47), Expect = 7.1
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 23 RHMSKDYDMAVITNDIYTKEDAE 45
R +KDY++ T++++ KE+ +
Sbjct: 47 RAFNKDYEILETTHEVFEKEEID 69
>ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99]
Length = 365
Score = 22.7 bits (47), Expect = 7.1
Identities = 9/17 (52%), Positives = 10/17 (57%)
Query: 102 DNLSATFNPELADFTIF 118
DN+ F P ADFT F
Sbjct: 94 DNIKNLFRPSHADFTYF 110
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 22.3 bits (46), Expect = 9.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMS 26
K+G+ G G GKT +I L +++
Sbjct: 150 KVGLFGGAGVGKTVIIMELIHNVA 173
>ref|NP_223117.1| putative [Helicobacter pylori J99]
Length = 391
Score = 22.3 bits (46), Expect = 9.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 8 GPVGSGKTALIEALTRHMSK 27
GP G GKT+L + + R + +
Sbjct: 44 GPPGVGKTSLAQIIARSLKR 63
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 22.3 bits (46), Expect = 9.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 8 GPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGVETG 64
GP G+GK+ L + L + K + T + + + + N V E G+E G
Sbjct: 12 GPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKG 68
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.139 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,998
Number of Sequences: 1491
Number of extensions: 7862
Number of successful extensions: 46
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 22
length of query: 199
length of database: 494,079
effective HSP length: 73
effective length of query: 126
effective length of database: 385,236
effective search space: 48539736
effective search space used: 48539736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)