BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645293|ref|NP_207463.1| hypothetical protein
[Helicobacter pylori 26695]
(933 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223331.1| putative [Helicobacter pylori J99] 1495 0.0
ref|NP_223990.1| putative [Helicobacter pylori J99] 149 3e-37
ref|NP_223645.1| putative [Helicobacter pylori J99] 38 0.001
ref|NP_224044.1| putative [Helicobacter pylori J99] 32 0.097
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 31 0.13
ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 31 0.17
ref|NP_223243.1| putative [Helicobacter pylori J99] 31 0.17
ref|NP_222988.1| putative [Helicobacter pylori J99] 30 0.22
ref|NP_222780.1| putative [Helicobacter pylori J99] 30 0.37
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 30 0.37
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 28 0.82
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 28 0.82
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 28 0.82
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 28 1.1
ref|NP_223038.1| putative [Helicobacter pylori J99] 28 1.1
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 28 1.1
ref|NP_223656.1| putative [Helicobacter pylori J99] 28 1.4
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 27 1.8
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 27 1.8
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 1.8
ref|NP_223400.1| putative [Helicobacter pylori J99] 27 2.4
ref|NP_223204.1| cag island protein [Helicobacter pylori J99] 27 2.4
ref|NP_223172.1| putative [Helicobacter pylori J99] 27 2.4
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 27 2.4
ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 2.4
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 27 3.1
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 26 5.3
ref|NP_223941.1| 50S RIBOSOMAL PROTEIN L18 [Helicobacter py... 26 5.3
ref|NP_223850.1| putative [Helicobacter pylori J99] 26 5.3
ref|NP_223731.1| putative [Helicobacter pylori J99] 26 5.3
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 26 5.3
ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 5.3
ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pyl... 26 5.3
ref|NP_224143.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylor... 25 7.0
ref|NP_223643.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_223446.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_223261.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_223252.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 25 7.0
ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter py... 25 7.0
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 25 7.0
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 25 9.1
ref|NP_223302.1| putative [Helicobacter pylori J99] 25 9.1
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 9.1
ref|NP_222950.1| putative histidine kinase sensor protein [... 25 9.1
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 1495 bits (3870), Expect = 0.0
Identities = 759/916 (82%), Positives = 815/916 (88%), Gaps = 12/916 (1%)
Query: 29 EKTLFDAILLQDLADAMYNVMPTKLGDRNYWENFTKKTGNIARTLNNRLKIIFDKNPEFF 88
+KTLFDAILLQDLA+A+YNVMPTKLGDRNYWENF KKTGNIARTLN RLK +F KNPE F
Sbjct: 253 QKTLFDAILLQDLANAVYNVMPTKLGDRNYWENFAKKTGNIARTLNERLKELFGKNPEIF 312
Query: 89 HGFLDSLRENIHQNIKEDEALDMITSHIITKPIFDALFGDNIKNPIAKALDKMVEKLSTL 148
FL SLR NIHQ+IKE+EALDMI SHIITKPIFDA+FGDNIKNPIAKALDKMV KLS L
Sbjct: 313 DNFLTSLRGNIHQSIKEEEALDMIISHIITKPIFDAIFGDNIKNPIAKALDKMVLKLSDL 372
Query: 149 GLEGETKDLKNLYESVKTEALHAKSQKSQQELIKNLYNTFFKEAFKKQSEKLGIVYTPIE 208
GLEGETKDLKNLYESVKTEA AKSQKSQQELIKNLYNTFFKEAF+KQSEKLGIVYTPIE
Sbjct: 373 GLEGETKDLKNLYESVKTEAARAKSQKSQQELIKNLYNTFFKEAFRKQSEKLGIVYTPIE 432
Query: 209 VVDFILRATNGILKKHFNTDFNDQSITIFDPFTGTGSFIARLLSKENALISDEALKEKFQ 268
VVDFILRATNGILKKHFNTDFNDQSITIFDPF GTGSFIARLLSKEN ISDEALKEKFQ
Sbjct: 433 VVDFILRATNGILKKHFNTDFNDQSITIFDPFMGTGSFIARLLSKENDFISDEALKEKFQ 492
Query: 269 KNLFAFDIVLLSYYIALINITQAAQNRDGSLNNFKNIALTDSLDYLEEKTNKGVLP---- 324
K LFAFDIVLLSYYIALINITQAAQNRD SL NFKNIALTDSLDYLEEK +KGV+P
Sbjct: 493 KGLFAFDIVLLSYYIALINITQAAQNRDSSLKNFKNIALTDSLDYLEEKNDKGVIPGFEY 552
Query: 325 LYEDLKENKGIKDTLANQNIRVIIGNPPYSAGAKSQNDNNQNLSHPKLEKLVYEKYGKNS 384
L+EDLKENK IK T+ QNIRVIIGNPPYS+GAKS+NDNNQNLSHPKLEK VYE YGKNS
Sbjct: 553 LFEDLKENKEIKTTMEKQNIRVIIGNPPYSSGAKSENDNNQNLSHPKLEKRVYETYGKNS 612
Query: 385 TSRSVGKTTRDTLIQSIRMASDVVKDRGVIGFVVNGGFIDSKSADGFRKCVAKEFSHLYV 444
T+++ +TRDTLI SIRMASD++KD+GV+GFVVNG FIDSKSADGFRKCVA++FSHLY
Sbjct: 613 TAQN-KNSTRDTLIHSIRMASDLLKDKGVLGFVVNGSFIDSKSADGFRKCVAQDFSHLYA 671
Query: 445 LNLRGNQRTSGEVSKKEGGKIFDSGSRATVAIIFFVKDKSTPDNTIFYYEVEDYLKREAK 504
LNLRGN RTSGE KK+G IFDSGSR TVAIIFFVKDK P++TIFYYEVEDYLKREAK
Sbjct: 672 LNLRGNARTSGEERKKQGDGIFDSGSRVTVAIIFFVKDKDAPNHTIFYYEVEDYLKREAK 731
Query: 505 LNWLANFENLDFVPFEKITPNDKGDWINQRNDAFEKLIPLKRDKTLQ-NDSVFDINSLGV 563
LN LANFENLD VPF++ITPNDKGDWINQRND FEKLIPLKRDK + +++FD+NS GV
Sbjct: 732 LNLLANFENLDSVPFKEITPNDKGDWINQRNDDFEKLIPLKRDKKSKIFNAIFDLNSNGV 791
Query: 564 VSGRDPWVYNFSPNILTQSVQKCIDTYNADLKRFNARFREAFKQRAQS----VKAGDLYK 619
+ RDPWVYNFS L QSVQ CIDTYNADLKRFN RFREAFKQR K+ D YK
Sbjct: 792 KTSRDPWVYNFSQKTLMQSVQNCIDTYNADLKRFNERFREAFKQRTAKDKGIKKSADRYK 851
Query: 620 QLNDKEITTDKTKIAWTDGLKNKLIKNKSARESSEERVRLALYRPFNKQWLYWDKDWINR 679
LND+EITTDKTKIAWTDGLKNKLIKN++ ES ERVRLALYRPFNKQWLYWDK+ INR
Sbjct: 852 HLNDREITTDKTKIAWTDGLKNKLIKNENLPESGMERVRLALYRPFNKQWLYWDKNLINR 911
Query: 680 QREFSKIFPDKDAQNVVINTGVGNGKDFSALVSDFISDYSLISPNQAYPLYYYDDLGNRH 739
Q + KIFPDK A+NVVINTGVGNGKDFSALVSDFISD+SLISPNQAYPLYYYDDLGNR+
Sbjct: 912 QSQLPKIFPDKSARNVVINTGVGNGKDFSALVSDFISDFSLISPNQAYPLYYYDDLGNRY 971
Query: 740 YAISGYCLNLFRRHYGDNLIAEEEIFYYIYAIFHHKGYLEKYKNSLAKEAPRIALSEDFK 799
AISGY LNLFRRHY DN I EEEIFYYIYAIFHHKGYLEKYKNSLAKEAPRIALSEDFK
Sbjct: 972 NAISGYALNLFRRHYKDNAITEEEIFYYIYAIFHHKGYLEKYKNSLAKEAPRIALSEDFK 1031
Query: 800 ELSVLGKELAELHLNYESGEMHDNIKYTTLMNAEIEGYYDVDKM--TKKGDCIIYNQNIA 857
ELS+LGKELAELHLNYESGEMH ++K+ L +AE+EGYYDV +M KKGD I YN +I
Sbjct: 1032 ELSMLGKELAELHLNYESGEMHTSVKHNLLESAEMEGYYDVIQMKKDKKGDRIKYNHHIT 1091
Query: 858 ITKIPKKAFDYVINGKSAIDWVIERYQKTMDKESLIENNPNDYAGGKYVFELLCRVITLS 917
IT+IPKKAFDYV+NGKSAIDWVIERYQ T DK+SLIENNPN YAGGKY+FELLCRVITLS
Sbjct: 1092 ITQIPKKAFDYVVNGKSAIDWVIERYQITKDKDSLIENNPNHYAGGKYIFELLCRVITLS 1151
Query: 918 VKSVDLIEKISEKRFE 933
VKSVDLIEKISEKRFE
Sbjct: 1152 VKSVDLIEKISEKRFE 1167
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 149 bits (376), Expect = 3e-37
Identities = 208/931 (22%), Positives = 381/931 (40%), Gaps = 176/931 (18%)
Query: 82 DKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHIITKPI---FDALFGDNIKNPIAKAL 138
D+ F F + L E + D +T + + F+ + +N+++ I K
Sbjct: 186 DQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKIDLNNVRSSIPKNF 245
Query: 139 DKMVEKLSTLGLEGETKDLKNLYESVKTEALHA------KSQKSQQELIKNLYNTFFKEA 192
+ E L ++++ L + H K ++ + Y TF
Sbjct: 246 AVIREMADFLKKLDAIQEIQWLLNEILILINHVDMGPIIKDLNDDKDPYLHFYETFLSAY 305
Query: 193 FKKQSEKLGIVYTPIEVVDFILRATNGILKKHF-------NTDFNDQSITIFDPFTGTGS 245
K EK G+ YTP VV+FI+ A + +LK HF + ++++I + D TGTG+
Sbjct: 306 DPKLREKKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALDNKNIKLLDFATGTGT 365
Query: 246 FIARLLSK--ENALISD---EALKEKFQ---KNLFAFDIVLLSYYIALINITQAAQ---N 294
F+ K E SD ++K+Q K + F+ ++ Y IA +N++QA +
Sbjct: 366 FLLEAFRKALEVRKTSDGGASTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLSQAFKEEFK 425
Query: 295 RDGSLNNFKNIALTDSLDYLEE-KTNKGVLPLYEDLKENKGIKDTLANQNIRVIIGNPPY 353
+ N+ I LT++L E +G+ P++E KE ++ N+NI +I GNPPY
Sbjct: 426 KPLKENDTLKIILTNTLIQPSEIIAYRGLNPIFE--KELSNAQEIKKNENILIITGNPPY 483
Query: 354 SAGAKSQN---------------------DNNQNLSHPKLEKLVYEKYGKNSTSRSVGKT 392
S ++++ + N L+ L + K S S++ K
Sbjct: 484 SGASENKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLKNVQKQKESGSKNALKE 543
Query: 393 TR------------------DTLIQSIRMASDVVK--DRGVIGFVVNGGFIDSKSADGFR 432
+ D ++ +R A + ++ G+ GF+ N F+D+ + G R
Sbjct: 544 LKNLHSKYKLQKEKNPKWLLDDYVKFMRFAQNKIELLGHGLFGFISNNAFLDNPTFRGLR 603
Query: 433 KCVAKEFSHLYVLNLRGNQRTSGEVSK-KEGGKIFDSGSRATVAIIFFVKDKSTPDNTIF 491
+ + + + LY+LNL GN R E + +F+ V+I FVK I
Sbjct: 604 RSLLECYDELYILNLHGNARRKEETPQGATDENVFN--IMQGVSINLFVKKAQATKPKIC 661
Query: 492 YYEVEDYLKREAKLNWLANFENLDFVPFEKITPNDKGDWINQRNDAFEKLIPLKR----- 546
YY+V Y +R K +LA +LD + + ++ P + F LIP K
Sbjct: 662 YYDV--YGERAEKYAFLAQ-NDLDRIEWLELAP----------REPFYLLIPQKTPLLEE 708
Query: 547 -DKTLQNDSVFDINSLGVVSGRDPWVYNFSPNILTQSVQKCIDTYNADLKRFNARFREAF 605
++ +F I+S+G+V+G+D + L + V K + +N
Sbjct: 709 YEQGFSVQEMFQISSVGIVTGKDKIFIANNTESLKEQVLKYCNEFN-------------- 754
Query: 606 KQRAQSVKAGDL-YKQLNDKEITTDKTKIAWTDGLKNKLIKNKSARESSEERVRLALYRP 664
Q VK D+ Y+ + +++ D K+ + ARE++ + + L P
Sbjct: 755 ---EQCVK--DIHYRPFDIRKVYYDTKKL-------------ERARENTFKHM-LPPPPP 795
Query: 665 FNKQWLYWDKDWINRQREFSKIFPDKDAQNVVINTG---VGNGKDFS-ALVSDFISDYSL 720
N + P++ +NV +NT N K ++ +S ++D L
Sbjct: 796 TNPK------------------TPNQTRKNVALNTPRQLKNNDKSWTQCFISSQLNDQGL 837
Query: 721 ISPNQA----YPLYYYDDLGNRHYAISGYCLNLFRRHYGDNLIAEEEIFYYIYAIFHHKG 776
S YPLY + N + + +HY + E+ YIYA+ +
Sbjct: 838 SSGGNGAGVNYPLYQFKH-PNYTENFTPEFRSFIDKHYSHH-FEPLEVLGYIYALLYSPH 895
Query: 777 YLEKYKNSLAKEAPRIALSED---FKELSVLGKELAELH-LNYES-GEMHDNIKYTTLMN 831
Y ++Y++ L + P+I + + F+ LS+LG EL LH LN ES + +K T+
Sbjct: 896 YRKRYEDFLKADYPKILFTNNKDLFRALSLLGIELIGLHVLNRESLNHSFEKLKDPTIGE 955
Query: 832 AEIEGYYDVDKMTKK------GDCIIYNQNIAITKIPKKAFDYVINGKSAIDWVIERYQK 885
+ + +D + + KK + N + + ++ DY+I G +D ++ +
Sbjct: 956 SYYKEAHDRNPIIKKPSHKKLEQRLYINHSAYFRGVSEEIHDYMIGGYGVLDKYLKSH-- 1013
Query: 886 TMDKESLIENNPNDYAGGKYVFELLCRVITL 916
+N P D+ + +++ R I +
Sbjct: 1014 --------KNEPCDFDHVSNIIKIIARTIEI 1036
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 37.7 bits (86), Expect = 0.001
Identities = 64/288 (22%), Positives = 103/288 (35%), Gaps = 94/288 (32%)
Query: 204 YTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTGTGSFIARLLSKENALISDEAL 263
YTP V+D I + G+ + FN D + + I F+P GTG FIA S +N
Sbjct: 526 YTPKLVIDSIYQ---GLDQLGFNNDNHPKEI--FEPSLGTGKFIAHAPSDKN-------- 572
Query: 264 KEKFQKNLFAFDIVLLSYYIALINITQAAQNRDGSLNNFKNIALTDSLDYLEEKTNKGVL 323
+ F + LD + +K +
Sbjct: 573 --------YRF--------------------------------IGTELDPISANLSKFLY 592
Query: 324 PLYEDLKENKGIKDTLANQNIRVIIGNPPYSAGAKSQNDNNQNLSHPKLEKLVYEKYGKN 383
P + +N +++ Q +GNPPY K + N++ LS+ +
Sbjct: 593 P--NQVIQNTALENYQFYQEYDAFVGNPPYG-NHKIYSSNDKELSNESIHNYF------- 642
Query: 384 STSRSVGKTTRDTLIQSIRMASDVVKDRGVIGFVVNGGFIDSKSADGFRKCVAKEFSHLY 443
+GK ++ +KD G+ FVV+ F+D+K+ R+ +AK + L
Sbjct: 643 -----LGKAIKE------------LKDDGIGAFVVSSWFMDAKNPK-MREHIAKNATFL- 683
Query: 444 VLNLRGNQRTSGEVSKKEGGKIFDSGSRATVAIIFFVKDKSTPDNTIF 491
G R V K G ++ T I+FF K N F
Sbjct: 684 -----GAIRLPNSVFKATGAEV-------TSDIVFFKKGVEKATNQSF 719
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 31.6 bits (70), Expect = 0.097
Identities = 55/240 (22%), Positives = 93/240 (37%), Gaps = 39/240 (16%)
Query: 145 LSTLGLEGETKDLKNLYESVKTEALHAKSQKSQQELIKNLYNTFFKEAFKKQSEKLGIVY 204
L+ LGLEG TK + E + + E ++ E+ G +
Sbjct: 213 LNKLGLEGITKVGFTDNQQAHQEFWSVYERPPKSEFQASILERRDLLVPSDVRERKGAYF 272
Query: 205 TPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTGTGSFIARLLSKENALISDEALK 264
TP V+ + L K D+ + I I+D GTG+ + LL+K N +S
Sbjct: 273 TPKIWVE----KSQEYLAKALGQDYQEDYI-IWDCAGGTGNLLRGLLNKANLYLS----- 322
Query: 265 EKFQKNLFAFDIVLLSYYIALINITQAAQNRDGSLNN--FKNIALTDSLDYLEEKTNKGV 322
L D+ ++ A++N L N F+ L D D+ +KT K +
Sbjct: 323 -----TLDHNDVAIIK--------DLASKNHLKMLENQVFQFDFLND--DFFSDKTPKSL 367
Query: 323 LPLYEDLKENKGIKDTLANQNIRVIIGNPPY--SAGAKSQNDNNQNLSHPKLEKLVYEKY 380
+ +D ++ K + +I NPPY + AK+ + +N L+ +KY
Sbjct: 368 QEILKDEEKRKKL----------IIYINPPYAEATSAKTPSGTGKNKDLVARGNLICKKY 417
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 31.2 bits (69), Expect = 0.13
Identities = 42/189 (22%), Positives = 76/189 (39%), Gaps = 34/189 (17%)
Query: 347 IIGNPPYSAGAKSQNDNNQNLSHPKLEKLVYEKYGKNSTSRSVGKTTRDTLIQSIRMASD 406
IIGNPPY + + ++L P LEK + Y +T D ++
Sbjct: 818 IIGNPPY-----IRQEQIKDLK-PLLEKQYQDFY----------NSTADIYTYFFALSFH 861
Query: 407 VVKDRGVIGFVVNGGFIDSKSADGFRKCVAKEFSHLYVLNLRGNQRTSGEVSKKEGGKIF 466
+++++G F+ + + +K R+ + K+ + + + L K+F
Sbjct: 862 LLREKGFSAFITSNKYARAKYGAKLREWLLKKTTLVSYMELNAL-------------KVF 908
Query: 467 DSGSRATVAIIFFVKDKSTPDNTIFYYEV----EDYLKREAKLNWLANFENLDFVPFEKI 522
+S + T +II F+K ++ YYE +D LK L+ N + + F
Sbjct: 909 ESAAVDT-SIIHFIKQPPLKESDFKYYEPTPDDKDDLKSTPYLSMKQNALSTESFIFANA 967
Query: 523 TPNDKGDWI 531
T D D I
Sbjct: 968 TLLDLRDKI 976
>ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 381
Score = 30.8 bits (68), Expect = 0.17
Identities = 19/58 (32%), Positives = 31/58 (52%), Gaps = 13/58 (22%)
Query: 193 FKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTGTGSFIARL 250
++ + + LG V+TP +VDF+L ILK + ++ +P G GSF+ RL
Sbjct: 6 YQLEIKTLGQVFTPKNIVDFML-----ILKHNHG--------SVLEPSAGDGSFLKRL 50
Score = 25.8 bits (55), Expect = 5.3
Identities = 27/109 (24%), Positives = 46/109 (41%), Gaps = 21/109 (19%)
Query: 339 LANQNIRVIIGNPPYSAGAKSQNDNNQNLSHPKLEKLVYEKYGKNSTSRSVGKTTRDTLI 398
L NQ IIGNPPY +++++ EKL Y + + S + +
Sbjct: 77 LENQ-FNTIIGNPPYV--------KHKDIAPSTKEKLHYSLFDERS----------NLYL 117
Query: 399 QSIRMASDVVKDRGVIGFVVNGGFIDSKSADGFRKCVAKE--FSHLYVL 445
I A +K +G + F+ F+ S S+ + + KE +H + L
Sbjct: 118 FFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFEL 166
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 30.8 bits (68), Expect = 0.17
Identities = 37/130 (28%), Positives = 52/130 (39%), Gaps = 15/130 (11%)
Query: 27 NDEKTLFDAILLQDLADAMYNVMPTKLGDRN--------YWE---NFTKKTGNIARTLNN 75
ND + ++L A+ N+ T LG +N W +FTKK G A NN
Sbjct: 359 NDNNLVNSGVILPSFPMAIGNITKT-LGYKNNFYYGGSGIWNKLTSFTKKQGFHAIYFNN 417
Query: 76 RLKIIFDKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHIITKPIFDALFGDNIKNPIA 135
L + F KN + + +H NI D L+ H T + L IKN
Sbjct: 418 HL-LEFAKNKPYPKPIESNW--GVHDNILFDYILENTNPHEKTFSMVMTLSNHAIKNVNL 474
Query: 136 KALDKMVEKL 145
KA +EK+
Sbjct: 475 KAFGVPLEKI 484
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 30.4 bits (67), Expect = 0.22
Identities = 23/84 (27%), Positives = 37/84 (43%), Gaps = 9/84 (10%)
Query: 18 LEAMMATNHNDEKTLFDAILLQDLADAMYNVMPTKLGDRNYWENFTKKTGNIARTLNNRL 77
L ++ N + +FD + DL +Y+ P K +Y N+A T N ++
Sbjct: 360 LNESLSINEDMSSVIFDVSMQMDLGLLLYDFDPNK----HYKNEIVNHYENLANTFNRKI 415
Query: 78 KIIFD--KNPEFFHGFLDSLRENI 99
+I KNP +L+SLR I
Sbjct: 416 EIFQTDIKNPIM---YLNSLRNPI 436
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 29.6 bits (65), Expect = 0.37
Identities = 25/106 (23%), Positives = 45/106 (41%), Gaps = 16/106 (15%)
Query: 16 KSLEAMMAT-----NHNDEKTLFDAILLQDLADAMYNVMPTKLGDRNYWENFTKKTGNIA 70
KSLE M N NDE Q+L ++ ++MP+ LG +Y E+ T
Sbjct: 251 KSLEDWMGAYSYDENPNDELDRMAISKEQELEKSLEDLMPSVLGVPSYNESLTLAKNRCV 310
Query: 71 RTLNNRLKIIFDKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHI 116
+ L+ GF + ++E+ + + +EA D + + +
Sbjct: 311 KNFKEALE-----------GFTEKIKESPNDSNAINEAFDNLETEL 345
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 29.6 bits (65), Expect = 0.37
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Query: 130 IKNPIAKALDKMVEKLSTLGLEGETKDLKNLYESVKTEALHAKSQKSQ 177
+KNP+++AL+ + +K G + T +LK K+ A H K + SQ
Sbjct: 975 LKNPLSEALEGLTQK----GYDEHTHELKRAIFMAKSYAYHYKHEFSQ 1018
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 28.5 bits (62), Expect = 0.82
Identities = 69/297 (23%), Positives = 121/297 (40%), Gaps = 76/297 (25%)
Query: 108 ALDMITSHIITKPIFDALFGDNIKNPIAKALDKMVEKLSTLGLE-GETKDLKN----LYE 162
A D + +++ K +D N + LD + ++S+ E TK L+E
Sbjct: 92 AYDELLNYLFEKHFYD--------NDLHLKLDAIFNRISSNNAELFNTKSTDETTIALFE 143
Query: 163 SVKTEALHAKSQKSQ--QELIKNLYNTFFKEAFKKQSEKLGI-VYTPIEVVDFILRATN- 218
SV ++ ++ S+++ + L+ L N FK+AF + G + PI +++L+ N
Sbjct: 144 SV-SQYINEGSKRANFTRSLLDKLKNFNFKQAFLNLQNQQGYDFFAPI--FEYLLKDYNN 200
Query: 219 ---GILKKHFN------------TDFNDQSITIFDPFTGTGSFIARLLSKENALISDEAL 263
G +++ + QS+ I+DP GTG+ L++ + + +D
Sbjct: 201 NSGGTYAEYYTPLSIASIIAKLLVNKPTQSVKIYDPSAGTGTL---LMALAHQIGTDSC- 256
Query: 264 KEKFQKNLFAFDIVLLSYYIALINITQAAQNRDGSLNNFKNIALTDSLDYLEEKTNKGVL 323
L+A DI S + +N+ LN+ LT SL + E N
Sbjct: 257 ------TLYAQDISQKSLRMLKLNLI---------LND-----LTHSLRHAIE-GNTLTN 295
Query: 324 PLYEDLKENKGIKDTLANQNIRVIIGNPPYSAGAK------SQNDNNQNLSHPKLEK 374
P + K++KG D I+ NPP+ SQN N+ L P + K
Sbjct: 296 PYHS--KDHKGKMD--------FIVSNPPFKLDFSNEHAEISQNKNDFFLGVPNIPK 342
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 28.5 bits (62), Expect = 0.82
Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 10/84 (11%)
Query: 613 KAGDLYKQLNDKEITTDKTKIAWTDGLKNKLIKNKSARESSEERVRLALYRPFNKQWLYW 672
K D+Y D+ + D + D L NK + K AR++ +RVR+ P W+
Sbjct: 295 KGNDIYDDETDEILLFDLHE---QDNL-NKEEEEKEARQNINDRVRVQRKNP----WM-- 344
Query: 673 DKDWINRQREFSKIFPDKDAQNVV 696
++ I RQ + ++F + ++Q V+
Sbjct: 345 NEAGIKRQSKKKRVFRNDNSQKVI 368
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 28.5 bits (62), Expect = 0.82
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 778 LEKYKNSLA---KEAPRIALSEDFKELSVLGKELAELHLNYESGEMHDNIKYTTLMNAEI 834
LE K +L KE+ + E KELS L +E +L +E+ + + K + + E+
Sbjct: 419 LEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEK--EVFKEISRLKMEM 476
Query: 835 EGY-YDVDKMTKKGDCIIYNQ--NIAITKIPKK 864
EG + ++ + GD Y Q I +KIP+K
Sbjct: 477 EGLKKEAERFKRNGD---YQQAAEIEYSKIPEK 506
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 28.1 bits (61), Expect = 1.1
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 181 IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPF 240
++NL + + KE GI YTP +V+ + DF+ DP
Sbjct: 91 LENLGSYYEKELSNTTRNLEGIYYTPNRIVEQLFTLPK---------DFDTTQAIFCDPA 141
Query: 241 TGTGSFIARLL 251
G+G+F+ L
Sbjct: 142 VGSGNFVMHAL 152
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 28.1 bits (61), Expect = 1.1
Identities = 28/108 (25%), Positives = 48/108 (43%), Gaps = 15/108 (13%)
Query: 91 FLDSLRENIHQNIKEDEALDMITSHIITKPIFDALFGDNIKNPIAKALDKMVEKLSTLGL 150
FLD ++ IH+N +EA TK I+ K ++K + K +
Sbjct: 10 FLDFCKQTIHKN--SNEAFQK------TKRALFKEKSQKIREQAVKIVEKRLIKENMQLS 61
Query: 151 EGETKDLKNLYESVKT---EALHAKSQKSQQELIKNLYNTFFKEAFKK 195
+ ++LK ++E+ + E +HAK K +QE FKE ++K
Sbjct: 62 DFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKT----TKHFKEVWEK 105
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 28.1 bits (61), Expect = 1.1
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 214 LRATNGILKKHFNTDFNDQSITIFDPFTGTGSFIARLLSKENALISDEALKEKFQKNLFA 273
+R T G N N I D T S + +N+ I+++ LK ++++N
Sbjct: 1 MRVTFGSKYNQMNHYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLD 60
Query: 274 FDI-VLLSYYIALINITQAAQNRDGSLNNFKNIALTDSLDYLEEKTNKGVLPLYEDLKEN 332
I V + Y + +N +A Q ++ FK + + D E + + E LKE+
Sbjct: 61 QGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERLKEH 120
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 27.7 bits (60), Expect = 1.4
Identities = 28/117 (23%), Positives = 46/117 (38%), Gaps = 9/117 (7%)
Query: 640 KNKLIKNKSARESSEERVRLA--LYRPFNKQWLYWDKDWINRQREFSKIFPDKDAQNVVI 697
K+K N +E +E++ LA + K + K +E SK FP+K ++
Sbjct: 91 KHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEHSKEFPNKKQLQTML 150
Query: 698 NTGVGNGKDFSALVSDFISDYSLISPNQAYPLYYYDDLGNRHYAISGYCLNLFRRHY 754
NG + + + D+ + IS Y LG + Y+ G L R Y
Sbjct: 151 ENAFDNGAE--SFIDDWHERFGGISRENTYKA-----LGIKEYSDEGKILAFGERSY 200
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 27.3 bits (59), Expect = 1.8
Identities = 34/134 (25%), Positives = 58/134 (42%), Gaps = 23/134 (17%)
Query: 796 EDFKELSVLGKELAELHLNYESGE---------MHDNIKYTTLMNAEIEGYYDVDKMTKK 846
E F EL K+ E +NY + E HDN+ T ++A +E Y V+K+TK
Sbjct: 269 EYFLELKEANKKQNEATINYTTLENKIQSVKVKTHDNLGALTHISA-LEDYI-VEKITKT 326
Query: 847 GDCIIYNQNIAITKIPKKAFDYVINGKSAIDWVIERYQKTMDKESLIENNPNDYAGGKYV 906
+ N+ + + K+ F +++ G+ Q+ M KE++ + + K
Sbjct: 327 EIRFLNGFNLLLDQ--KEPFSHLLEGE----------QEVMLKEAIKSHFEREEGLFKKG 374
Query: 907 FELLCRVITLSVKS 920
+ LC V V S
Sbjct: 375 IKALCMVFINGVNS 388
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 27.3 bits (59), Expect = 1.8
Identities = 31/126 (24%), Positives = 53/126 (41%), Gaps = 9/126 (7%)
Query: 294 NRDGSLNNFKNIALTDSLDYLEEKTNKGVLPLYEDLKEN--KGIKDTL----ANQNIRVI 347
N LN K AL + + T KG L Y DL ++ +G+ ++ A I
Sbjct: 287 NITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHI 346
Query: 348 IGNPPYSAGAKSQNDNNQNLSHPKLEKLVYEKYGKNSTSRSVG---KTTRDTLIQSIRMA 404
G P ++ D N N+ + + + Y GK +++ TT + +IQ+I
Sbjct: 347 EGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARKTIAITPITTMNDIIQAINAN 406
Query: 405 SDVVKD 410
+D +D
Sbjct: 407 TDDNQD 412
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.3 bits (59), Expect = 1.8
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 303 KNIALTDSLDYLEEKTNKGVLPLYEDLKE-----------NKGIKDTLANQNIRVIIGNP 351
KN T++ + E+ N GV E++KE N+ IK+ L N I G
Sbjct: 42 KNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTNEQIKELLNNAKIPT-SGRD 100
Query: 352 PYSAGAKSQNDNNQNLSHPKLEKLVYEK 379
+ G + N H +K++ EK
Sbjct: 101 AITFGTNNLNPEMVEFLHKNNKKMIIEK 128
>ref|NP_223400.1| putative [Helicobacter pylori J99]
Length = 327
Score = 26.9 bits (58), Expect = 2.4
Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 492 YYEVEDYLKREAKL--NWLANF--ENLDFVPFEKITPNDKGDWINQRNDAFEKLIP---- 543
Y ++++L +E ++ N + N E L F +++ KG + DA L P
Sbjct: 11 YKRIDEFLAKELQISKNQVLNLIKEGLVFCQKKEVK---KGGLALKEGDAITLLTPKIVP 67
Query: 544 --LKRDKTLQNDSVFDINSLGVVSGRDPWVYNFSPNILTQSVQKCIDTYNADLKRFNARF 601
LK++ L+ + +F+ L V++ V + +P++ ++ + + N +L +
Sbjct: 68 KPLKKELDLEIEVIFEDEDLLVLNKPPNLVVHKAPSVKEPTLVDWLKSQNYELSNLGLKE 127
Query: 602 REAFKQRAQSVKAGDLYKQLNDKEITTDKTKIAWTDGLKNKLI 644
R R +G + N + T + ++ LK K++
Sbjct: 128 RYGIVHRLDKDTSGGIVIAKN------NFTHVCLSEQLKTKMM 164
>ref|NP_223204.1| cag island protein [Helicobacter pylori J99]
Length = 306
Score = 26.9 bits (58), Expect = 2.4
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 613 KAGDLYKQLNDKEITTDKTKIAWTDGLKNKLIKNKSARESSEERV 657
K LY++ +DKEIT ++ + A T+ L+ KL +++ E ++ +
Sbjct: 44 KIKTLYQRHDDKEITKEEKEFA-TNALREKLRNDRARVEQIQKNI 87
>ref|NP_223172.1| putative [Helicobacter pylori J99]
Length = 343
Score = 26.9 bits (58), Expect = 2.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 190 KEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTGTGSFI 247
K K++S LG YTP +VD + +LKKH ++ T+ D G F+
Sbjct: 6 KHLTKQESVNLGAYYTPPYLVDCAYK----LLKKHVGI----ENYTLLDTACGNKEFL 55
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 26.9 bits (58), Expect = 2.4
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 118 TKPIFDALFGDNIKNPIAKALDKMVEKLSTLGLEGETKDLKNLYESVKTEALHAKSQKSQ 177
T P +L N + P+ K K +E L +T +L + VK + K+Q+
Sbjct: 35 TNPNSASLETPNPQEPLEK---KAIENDLIDCLLKKTDELSS--HLVKLQMQFEKAQEES 89
Query: 178 QELIKNLYNTFFKEAFKKQSEKL 200
+ LI+N N +K FK+ EK+
Sbjct: 90 KVLIENAKNDGYKIGFKEGEEKM 112
>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 180
Score = 26.9 bits (58), Expect = 2.4
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 758 LIAEEEIFYYIYAI-----FHHKGYLEKYKN--------SLAKEAPRIALSEDFKELSVL 804
L EE ++ + +I FH GYL YKN ++ K RIA F+E +
Sbjct: 66 LFKEESVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGGTILKALERIA----FEEFQLN 121
Query: 805 GKELAELHLNYESGEMHDNIKYTTLMNAEIEGYYDVDK 842
L + N+++ ++ Y + ++G+ DK
Sbjct: 122 SLHLEVMENNFKAIAFYEKNHYE--LEGRLKGFISKDK 157
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 26.6 bits (57), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (50%)
Query: 343 NIRVIIGNPPYSAGAKSQNDNNQNLSHPKLEKLVYEK 379
N+ V I N PY G ++ Q L P +KL Y+K
Sbjct: 433 NLYVKIKNDPYKEGMLCGYESVQKLLSPLRDKLKYDK 469
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 25.8 bits (55), Expect = 5.3
Identities = 19/74 (25%), Positives = 32/74 (42%), Gaps = 7/74 (9%)
Query: 179 ELIKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 238
+L+ + Y + + + G YTP EV +L GI + Q +I+D
Sbjct: 136 DLLGDAYEYLMRHFASESGKSKGQFYTPSEV-SLLLSLLLGI------DENTRQDKSIYD 188
Query: 239 PFTGTGSFIARLLS 252
P G+GS + + S
Sbjct: 189 PTCGSGSLLLKASS 202
>ref|NP_223941.1| 50S RIBOSOMAL PROTEIN L18 [Helicobacter pylori J99]
Length = 118
Score = 25.8 bits (55), Expect = 5.3
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 52 KLGDRNYWENFTKKTGNIARTLNNR--LKIIFDKNPEFFHG----FLDSLREN 98
K+G +N E+ K A L + ++D+N +HG F +SLREN
Sbjct: 62 KMGFKNTQEDAKKLGALFAEELKKAGIERAVYDRNGYLYHGVVAAFAESLREN 114
>ref|NP_223850.1| putative [Helicobacter pylori J99]
Length = 59
Score = 25.8 bits (55), Expect = 5.3
Identities = 12/38 (31%), Positives = 23/38 (59%), Gaps = 1/38 (2%)
Query: 750 FRRHYGDNLIAEEEIFYYIYAIFHHKGYLEKYKNSLAK 787
++R Y N++A + + + A+ KG +E+YKN + K
Sbjct: 20 YKRTYDSNIVAADTDGHIVAAVTA-KGKVEEYKNGIHK 56
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 25.8 bits (55), Expect = 5.3
Identities = 32/127 (25%), Positives = 51/127 (39%), Gaps = 9/127 (7%)
Query: 73 LNNRLKII--FDKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHIITKPIFDALFGDNI 130
L +RLK + DK+ + G S H N K+ + S + D+ F N+
Sbjct: 60 LESRLKSLKGMDKDAKELVGISKSYA---HNNEKDRSDFERFKSRL--DKAIDS-FNQNL 113
Query: 131 KNPIAKA-LDKMVEKLSTLGLEGETKDLKNLYESVKTEALHAKSQKSQQELIKNLYNTFF 189
N A L ++ T LE +K L++ ES++ K Q ++ + YNT
Sbjct: 114 DNGAASLKLPSDIDIDDTKALEKFSKSLESEKESIQNSLHQWKKQLAETNHLNKEYNTLD 173
Query: 190 KEAFKKQ 196
K Q
Sbjct: 174 KTRLNAQ 180
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 25.8 bits (55), Expect = 5.3
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 215 RATNGILKKHFNTDFNDQSITIFDPFTGTGSFIARLLSKENALISDEALKEKFQKNLFAF 274
+AT + KK F Q I + F G + + R LS EN I+D + + L A
Sbjct: 40 QATELLQKKAQLVSFKIQGI-MKRIFMGANT-LERFLSDENGAINDTLKRRMLSEFLLAN 97
Query: 275 DIVLLSYYIALINITQ--AAQNRDGSL---NNFKNIALTDSLDYLEEKTNKGVLPLYEDL 329
VLL I N + A N D + N N +T+ + L+ T P Y+++
Sbjct: 98 PHVLLVSAIYTNNNERMITAMNMDSKIAYPNTALNENMTNQIHSLKSITRSD--PYYKEV 155
Query: 330 KENK--GIKDTL----ANQNI 344
+K G+ TL NQN+
Sbjct: 156 NGDKIYGMDITLPLMGKNQNV 176
>ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 25.8 bits (55), Expect = 5.3
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Query: 203 VYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTGTGSFIARLLSKENALISDEA 262
V + IE V + + +++K +T N T+ DPF G+G+ + + I E+
Sbjct: 159 VVSGIERVKHPTQKSLTLMEKIISTHTNPND-TVLDPFMGSGTTGLACKNLKRNFIGIES 217
Query: 263 LKEKFQ 268
KE FQ
Sbjct: 218 EKEYFQ 223
>ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 25.8 bits (55), Expect = 5.3
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 99 IHQNIKEDEALDMITS--HIITKPIFDALFGDNIKNPIAKALDKMVEKLSTLGLEGETK 155
I Q KE E + + H+ PI + GD I + I A+ K+V+ +GE K
Sbjct: 7 ILQKPKEGEEITIKDGKLHVPNYPIIPFIEGDGIGSDITPAMIKVVDSAVQKAYKGEKK 65
>ref|NP_224143.1| putative [Helicobacter pylori J99]
Length = 235
Score = 25.4 bits (54), Expect = 7.0
Identities = 27/110 (24%), Positives = 52/110 (46%), Gaps = 17/110 (15%)
Query: 775 KGYLEKYKNSLAK----EAPRIALSEDFKELSVLGKELAELHLNYESGEMHDNIK----- 825
K YL K ++++ K ++P+ + ++ S L L L NY + + I+
Sbjct: 87 KRYLLKIEHTIKKHFVLQSPKCLILHVHQKTS-LENRLKVLE-NYYRQVLREKIQTYINQ 144
Query: 826 YTTLMNAEIEGYYDVDKMTKK-GDCIIYNQ----NIAITKIPKKAFDYVI 870
Y ++N I+ + + KM + G C I + N+ + K P+K +YV+
Sbjct: 145 YEKILNESIQSF-KIQKMKRIWGSCNIAKRTLLFNLELAKAPRKGIEYVV 193
>ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylori J99]
Length = 440
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/32 (40%), Positives = 19/32 (58%)
Query: 138 LDKMVEKLSTLGLEGETKDLKNLYESVKTEAL 169
+D + L T L+ K +KNLYE++K AL
Sbjct: 98 IDTAMALLMTKSLKLIQKGVKNLYETLKNRAL 129
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/53 (28%), Positives = 24/53 (44%)
Query: 604 AFKQRAQSVKAGDLYKQLNDKEITTDKTKIAWTDGLKNKLIKNKSARESSEER 656
A K+R + G+ Y LND + +K ++ + L + K S EER
Sbjct: 98 ANKERGHNALNGEPYCNLNDMILDMEKNRLGFQSNAWVSLEEAKMLGASKEER 150
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Query: 65 KTGNIARTLNNRLKIIFDKNPEFFHGFLDSLRENIHQN 102
K G IA N L FD+ P F L++LRE + N
Sbjct: 297 KPGEIALAHNGML--FFDELPHFKKDILEALREPLENN 332
>ref|NP_223261.1| putative [Helicobacter pylori J99]
Length = 192
Score = 25.4 bits (54), Expect = 7.0
Identities = 25/86 (29%), Positives = 43/86 (49%), Gaps = 12/86 (13%)
Query: 60 ENFTKKTGNIARTLNN--RLKIIFDKNPEFFHGFL-------DSLRENIHQNIKEDEALD 110
E F + T I +L N RL I + N E + D+L E +H+ +D+A+
Sbjct: 108 EMFIQMTKPIFDSLMNVDRLGIYINPNNEEVFALVRARSFDKDALSEGLHKMSLDDQAVS 167
Query: 111 MITSHIITKPIF-DALFGDNIKNPIA 135
++ S + + IF D++ ++K PIA
Sbjct: 168 ILVSKV--EEIFKDSINYGDVKVPIA 191
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 25.4 bits (54), Expect = 7.0
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Query: 509 ANFENLDFVP----FEKITPNDKGDWINQRNDAFEKLIPLKR 546
A F NL P F K TPN GD I A++ ++PL +
Sbjct: 317 ATFSNLLEAPKLEVFLKTTPNYYGDSIKDLLSAYKVVLPLDK 358
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.4 bits (54), Expect = 7.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 578 ILTQSVQKCIDTYNADLKRFNARFREAFKQRAQSVKAGDLYKQLNDKEIT 627
I +SV I+ NA+ + + + + +K D Y LND+ IT
Sbjct: 244 ISQESVDSMIEIVNANFSLVHRYYHQKAQILGHKLKDYDRYAPLNDESIT 293
>ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter pylori J99]
Length = 343
Score = 25.4 bits (54), Expect = 7.0
Identities = 23/72 (31%), Positives = 37/72 (50%), Gaps = 10/72 (13%)
Query: 109 LDMITSHIITKPIFDALFGDNIKNPIAKALDK-MVEKLSTLGLEGETKDLKNLYESVKTE 167
+D+ + K F A + IK +A DK +VE+L ETKDLK+ E V +
Sbjct: 155 MDLAFLKTLEKREFQAGVAEIIK--MAVCFDKNLVERL-------ETKDLKDCLEEVIFQ 205
Query: 168 ALHAKSQKSQQE 179
+++ K+Q Q+
Sbjct: 206 SVNIKAQVVVQD 217
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 25.4 bits (54), Expect = 7.0
Identities = 27/119 (22%), Positives = 54/119 (44%), Gaps = 16/119 (13%)
Query: 813 LNYESGEMHDNIKYTTLMNAEIEGYYDVDKMTKKGDCIIYNQNIAITKIPKKAF-DYVIN 871
L+Y ++ +++YTTL + +D+ ++ K +Y + + IT K+ Y+
Sbjct: 266 LSYIHNKVEGSLEYTTLFYIPSKAPFDLFRVDYKSGVKLYVKRVFITDDDKELLPSYLRF 325
Query: 872 GKSAIDWVIERYQKTMDKESLIENNPNDYAGGKYVFELLCRVITLSVKSV-DLIEKISE 929
K ID E + +E L +N ++L + + SVK + IE++S+
Sbjct: 326 VKGVID--SEDLPLNVSREILQQN------------KILANIRSASVKKILSEIERLSK 370
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 25.0 bits (53), Expect = 9.1
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 775 KGYLEKYKNSLAKEAPRIALSEDFKELSVLGKELAELHLNYESGEMHDNIKYTTLMNAEI 834
KG +E+ L K + L + + ++L K+L N + + D Y +
Sbjct: 289 KGDIEQ-SPKLLKVSGHSNLLDGALDFTLLNKDLKARFSNISTSKALDLFHYPKFFQSIA 347
Query: 835 EGYYDVDKMTKKGDCIIYNQNIAITKIPKKAFDYVINGKSAIDWVIERY 883
+ D D ++K+G + N+ + K AF + S D E Y
Sbjct: 348 DANLDYDLISKQG---VLKANLKNARFLKNAFSDFLYSISRFDITKEIY 393
>ref|NP_223302.1| putative [Helicobacter pylori J99]
Length = 167
Score = 25.0 bits (53), Expect = 9.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 46 YNVMPTKLGDRNYWENFTKKTGNI 69
+N + L D ++WE + K +GNI
Sbjct: 33 FNKVVQHLRDASHWEKYYKNSGNI 56
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.0 bits (53), Expect = 9.1
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Query: 123 DALFGDNIKNPIAKALDKMV-EKLSTLGLEGETKDLKNLYESVKTEALHAKSQKSQQELI 181
D L + + +A +K V + L T + E + +NLY + E + K+Q Q +L
Sbjct: 1303 DGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKKAQNKQNQLS 1362
Query: 182 K 182
K
Sbjct: 1363 K 1363
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 25.0 bits (53), Expect = 9.1
Identities = 17/69 (24%), Positives = 26/69 (37%)
Query: 130 IKNPIAKALDKMVEKLSTLGLEGETKDLKNLYESVKTEALHAKSQKSQQELIKNLYNTFF 189
+KN K DK L E L+N + L S K + + L N F
Sbjct: 12 LKNSHLKHSDKASSFKGLLENENNVISLENFKPKESEDLLENFSNKKDMQELLELLNQFI 71
Query: 190 KEAFKKQSE 198
+++K + E
Sbjct: 72 LQSYKVEKE 80
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,066,909
Number of Sequences: 1491
Number of extensions: 55196
Number of successful extensions: 258
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 76
length of query: 933
length of database: 494,079
effective HSP length: 86
effective length of query: 847
effective length of database: 365,853
effective search space: 309877491
effective search space used: 309877491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)