BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645294|ref|NP_207464.1| hypothetical protein
[Helicobacter pylori 26695]
(449 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223965.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223856.1| putative role in outermembrane permeabilit... 35 0.004
ref|NP_223220.1| putative [Helicobacter pylori J99] 29 0.28
ref|NP_224063.1| putative thiophene/furan oxidation protein... 28 0.48
ref|NP_224134.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223618.1| putative [Helicobacter pylori J99] 25 3.1
ref|NP_222890.1| putative [Helicobacter pylori J99] 25 4.0
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 25 4.0
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 5.3
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 24 6.9
ref|NP_222952.1| FLAGELLAR P-RING PROTEIN [Helicobacter pyl... 24 6.9
ref|NP_222896.1| putative [Helicobacter pylori J99] 24 6.9
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 24 9.0
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 24 9.0
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 24 9.0
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 35.4 bits (80), Expect = 0.003
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 231 SNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAINFQRIDNFSVILEKWIVF 290
+N+DI I + + + KDIT + ++ +D + Y + + D FSV L +
Sbjct: 242 TNYDIAIARLDEEKAQKDITLAKKSFLEDINVTGV-YYFRSKQYYNYDMFSVALSIPLPL 300
Query: 291 Y------IKDNRDFQLASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQ-TKLHEKL 343
Y ++ + LA ++ N K+ HL L + + ++ L+ + K +EK+
Sbjct: 301 YGKQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEKI 360
Query: 344 SEFFKISLSRTKCDQTKNY--FNDKCQEDLIQ 373
++ + + L +T D Y NDK + Q
Sbjct: 361 AQIYALDL-KTNGDYNAYYNALNDKITIQITQ 391
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 35.0 bits (79), Expect = 0.004
Identities = 27/101 (26%), Positives = 43/101 (41%), Gaps = 15/101 (14%)
Query: 157 FILQSFYIQNDFLSQRYEK----------DKIKAKSNLIPKRQNRLLTYQFDLSLECNII 206
F L S + QR++K DK+ AK N+I N +L L +
Sbjct: 23 FFLLSVSDAKEIAMQRFDKQNHKIFEILADKVSAKDNVITASGNAILLNYDVYILADKVR 82
Query: 207 FETLEKLALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNK 247
++T K AL+ G IK +Y ++ DY++ L+ K
Sbjct: 83 YDTKTKEALLEGNIK-----VYRGEGLLVKTDYVKLSLNEK 118
>ref|NP_223220.1| putative [Helicobacter pylori J99]
Length = 273
Score = 28.9 bits (63), Expect = 0.28
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 145 GCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKAKSNLIPKRQNRLLTYQFDLSLECN 204
G SYH N K F+ + F + DF YE ++ + L ++N LL++ FD
Sbjct: 29 GERSYHMN--KLFLERLFKNRKDF----YEMGRLDSLKLLNTLKENGLLSFNFDKPSVLK 82
Query: 205 IIFETLEKLALIAGAIKN 222
I F+ A +I N
Sbjct: 83 ITFKASSNPLAFAKSINN 100
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 28.1 bits (61), Expect = 0.48
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 264 EIDLYGIAINFQRIDNFSVILEKWIVFYIKDNRDFQLASILD--------IINKKD---- 311
EI+ GI + + ++N +IL + + + DF L L+ ++NK D
Sbjct: 288 EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKNDLAPK 347
Query: 312 ---PIIHLYLDMFVLISMIESFLKKPQQTKLHEKLSEFFKISLSRTKCD-QTKNYFNDKC 367
I+ YL + I + K L +K+SEFF K D Q K
Sbjct: 348 LELEILKSYLKIPYSILETNTLNSKACLKDLSQKISEFF------PKLDTQNKLLLTSLA 401
Query: 368 QEDLIQQ-IVDCRNSLAHGRSLKL 390
Q ++ I + +N+ +H +L+L
Sbjct: 402 QTTALENAITELQNAKSHLDTLEL 425
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 26.2 bits (56), Expect = 1.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 19 LKNPQTNPQNEQYIPGVFSYQENKI 43
++ PQ P + Q P FSY E+K+
Sbjct: 123 MQKPQNKPSSSQQSPQNFSYPESKL 147
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 25.4 bits (54), Expect = 3.1
Identities = 39/197 (19%), Positives = 84/197 (41%), Gaps = 34/197 (17%)
Query: 161 SFYIQNDFLSQRYEKDKIKAKSNLIPKRQNRLLTYQFDLSLECNIIFETL--EKLALIAG 218
S YIQ +D + ++LI ++ + ++ +F L ++L +
Sbjct: 5 SHYIQEQI------QDHLDLTTHLIHSNKDNNALLEVADKIDAEKLFSALYLKRLKFLNS 58
Query: 219 AIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAINFQRID 278
++N + ++ + + K + + I TY+K + ++E + +A+N
Sbjct: 59 QLQNSLKSVIESFDYSKEKALEEIKALDLGVKDIEKTYEKLRANLEEEYSSVAVN----- 113
Query: 279 NFSVILEKWIVFYIKDNRDFQLASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTK 338
SV+ K ++ ++D + + LAS+++ N+ + S IES + QQ
Sbjct: 114 --SVV--KKVIEEVRDQKPY-LASLINKPNEFN-------------SEIESIM---QQNL 152
Query: 339 LHEKLSEFFKISLSRTK 355
+ E KI+LS +K
Sbjct: 153 IKNAKLEIEKINLSFSK 169
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 25.0 bits (53), Expect = 4.0
Identities = 19/83 (22%), Positives = 33/83 (38%), Gaps = 16/83 (19%)
Query: 213 LALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAI 272
L I +K F +L +I + LS D+ N Y ++K ++ + +A
Sbjct: 104 LGFIFSCLKTFLVL-----------SFILYALSKMDLMKDANAYLQEKSAIFPTMKSVAS 152
Query: 273 NFQRIDNFSVILEKWIVFYIKDN 295
R+D K + +KDN
Sbjct: 153 KIMRLDGV-----KHVEKNLKDN 170
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 25.0 bits (53), Expect = 4.0
Identities = 15/54 (27%), Positives = 29/54 (52%), Gaps = 3/54 (5%)
Query: 327 IESFLKKPQQ---TKLHEKLSEFFKISLSRTKCDQTKNYFNDKCQEDLIQQIVD 377
I++FL K + +K H + F + + + T NY DK ++L++QI++
Sbjct: 16 IKNFLDKNYEVVASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHKELVKQIIE 69
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 24.6 bits (52), Expect = 5.3
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 368 QEDLIQQIVDCRNSLAHGRSLKLDTNKATDISHAFIDFKQIVIEFFFGEIGL 419
++D + +D +N + NK TD DFK+ + ++ E+GL
Sbjct: 624 EDDYYENTIDPKNGSDWNQ------NKPTDTKPELEDFKRTIADYLSYEVGL 669
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 24.3 bits (51), Expect = 6.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 379 RNSLAHGRSLKLDTNKATDISHAFIDFKQIVIEFFFGEI 417
RN + R T + DI A+ D + I IEFF EI
Sbjct: 182 RNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEI 220
>ref|NP_222952.1| FLAGELLAR P-RING PROTEIN [Helicobacter pylori J99]
Length = 342
Score = 24.3 bits (51), Expect = 6.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 424 TNNFGFLNKVKLRNPPKTEKITEPNR 449
T N F NKV + PKT +IT P R
Sbjct: 190 TLNKVFGNKVAIALDPKTIQITRPER 215
>ref|NP_222896.1| putative [Helicobacter pylori J99]
Length = 177
Score = 24.3 bits (51), Expect = 6.9
Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 26/138 (18%)
Query: 303 ILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTKLHE----KLSEF----FKISLSRT 354
+L + D + L + VL++ ESF+ K + E K ++F K+SLS
Sbjct: 55 VLSALGLVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIV 114
Query: 355 KCDQTKNYFNDKCQEDLIQQIVDCRNSLAHGRSLKLDTNKATDISHAFIDFKQIVIEFFF 414
ED++ I K T +SH I F Q+VI F
Sbjct: 115 AISAIFLLKRYMSLEDVLSSIP-----------------KDTPLSHNPI-FWQVVIHLVF 156
Query: 415 GEIGLSDFITNNFGFLNK 432
L +TNN F K
Sbjct: 157 VCSALLTAVTNNIAFSQK 174
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 23.9 bits (50), Expect = 9.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 373 QQIVDCRNSLAHGRSLKLDTNKATDISHAFIDFK 406
Q I + +NS+AH + + +A +I+ ++FK
Sbjct: 410 QTITNLKNSIAHFGTQEQQIQQAENIADTLVNFK 443
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 23.9 bits (50), Expect = 9.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 373 QQIVDCRNSLAHGRSLKLDTNKATDISHAFIDFK 406
Q I + +NS+AH + + +A +I+ ++FK
Sbjct: 451 QTITNLKNSIAHFGTQEQQIQQAENIADTLVNFK 484
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 23.9 bits (50), Expect = 9.0
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 9 EYFERQCLAFLKNPQTNPQNEQYIPGVFSYQENKISFSFLVLGEIEEIHSLQYQTLYIVD 68
++ + L F KN + N YI NK F +L + E I + L+IVD
Sbjct: 122 DFSDIMLLNFHKNIEVKIFNPYYI-------RNKGLRYFEMLADYERIKKRMHNKLFIVD 174
Query: 69 N 69
N
Sbjct: 175 N 175
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.141 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,395
Number of Sequences: 1491
Number of extensions: 25265
Number of successful extensions: 78
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 15
length of query: 449
length of database: 494,079
effective HSP length: 81
effective length of query: 368
effective length of database: 373,308
effective search space: 137377344
effective search space used: 137377344
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)