BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645297|ref|NP_207467.1| hypothetical protein
[Helicobacter pylori 26695]
         (426 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223334.1|  putative [Helicobacter pylori J99]               60  1e-10
ref|NP_223632.1|  putative [Helicobacter pylori J99]               59  2e-10
ref|NP_222748.1|  putative [Helicobacter pylori J99]               58  4e-10
ref|NP_224022.1|  putative [Helicobacter pylori J99]               49  2e-07
ref|NP_224023.1|  putative [Helicobacter pylori J99]               34  0.006
ref|NP_222801.1|  putative [Helicobacter pylori J99]               31  0.069
ref|NP_223880.1|  ALANYL-TRNA SYNTHETASE [Helicobacter pylor...    28  0.45
ref|NP_224064.1|  putative Outer membrane protein [Helicobac...    28  0.59
ref|NP_224182.1|  PENICILLIN-BINDING PROTEIN [Helicobacter p...    27  0.77
ref|NP_223048.1|  GTP-BINDING PROTEIN [Helicobacter pylori J99]    27  1.0
ref|NP_222803.1|  RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He...    27  1.0
ref|NP_223327.1|  putative [Helicobacter pylori J99]               26  1.7
ref|NP_223064.1|  putative [Helicobacter pylori J99]               26  2.2
ref|NP_222733.1|  putative [Helicobacter pylori J99]               26  2.2
ref|NP_224061.1|  putative Inner membrane protein [Helicobac...    25  2.9
ref|NP_223841.1|  50S RIBOSOMAL PROTEIN L1 [Helicobacter pyl...    25  5.0
ref|NP_223561.1|  putative FLAGELLAR BIOSYNTHESIS PROTEIN [H...    25  5.0
ref|NP_222872.1|  putative histidine kinase sensor protein [...    25  5.0
ref|NP_223432.1|  URIDYLATE KINASE [Helicobacter pylori J99]       24  6.5
ref|NP_223193.1|  cag island protein [Helicobacter pylori J99]     24  6.5
>ref|NP_223334.1| putative [Helicobacter pylori J99]
          Length = 263

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 58/205 (28%)

Query: 223 FVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKLGFEPTGIFYC------ENANTHKIEL 276
           FV +N+P+ T          FNLK YLL L  K+   PT I YC      +N NT +I+ 
Sbjct: 85  FVYENEPSAT----------FNLKSYLLVLA-KMHCNPTAICYCGNKQDAQNTNTKEIKF 133

Query: 277 I-------GNDSDFREVLLEFSENIPKAPNELPQFLTNFKNSKIPNGNISFSPPKNSPSI 329
           +       G + D + V L  S    ++  +L  FL       + N       P N P I
Sbjct: 134 LSAKSHDFGKEMDSKSVELSNSNTFIQSLLKLGSFLHGKTIESLNN-------PTNYPPI 186

Query: 330 SSYALSDKIKREVRDTFDRYLWHGYSKIPQEKRIAKIKEQVK-EEIKLNPSFRNYRVDSE 388
           +                          +     +A  K  V+ EE + N +F +YR  S 
Sbjct: 187 N--------------------------LVVTPALAPWKTTVEIEEHRKNITFDHYRQSSA 220

Query: 389 QNRKINEIAEGLKSGKIIGKKVIAN 413
           QN KINEIA  LK G+++  K+IAN
Sbjct: 221 QNIKINEIANDLKQGEVVSNKLIAN 245
 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 57  FDHLFVSAKITAFVVSTNESDTIFNLKNYLLVLAK-NLNNRDIWYCENTICDKKGTYNIE 115
           F  + +    + F V  NE    FNLK+YLLVLAK + N   I YC N   D + T   E
Sbjct: 72  FVEIVIGPSESLFFVYENEPSATFNLKSYLLVLAKMHCNPTAICYCGNK-QDAQNTNTKE 130

Query: 116 IELVS-NANDF 125
           I+ +S  ++DF
Sbjct: 131 IKFLSAKSHDF 141
>ref|NP_223632.1| putative [Helicobacter pylori J99]
          Length = 411

 Score = 58.9 bits (141), Expect = 2e-10
 Identities = 63/222 (28%), Positives = 98/222 (43%), Gaps = 45/222 (20%)

Query: 209 TIEDYLILDNLKSCFVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKLGFEPTGIFYCEN 268
           +++D L+ D   S FV QN+P+ T          FNLK+ LL L     F    I YC+N
Sbjct: 208 SLKDGLLTDKETSFFVFQNEPSDT----------FNLKKTLLVLAR--AFSQAAICYCQN 255

Query: 269 ANTHKIELIGND-SDFREVLLEFSENIPKAPNELPQFLTNFKN------SKIPNG--NIS 319
           A+ ++++LI  +   + EV   F+     AP +LPQFLT  K+       K PN      
Sbjct: 256 ASANEVDLISTEPGSYGEVWDTFNGIAFSAPVQLPQFLTRLKDKVYTFFKKQPNSGYGTD 315

Query: 320 FSPPKNSPSISSYALSDKIKREVRDTFDRYL------------WHGYSKIPQEKRIAKIK 367
           F     +   ++    D++     + F+ Y+             +GY K+     I +I 
Sbjct: 316 FDGIAKTQIKAAILPIDRLS----EPFESYIVGSIKGRQSMARAYGYPKV---FTIDEIS 368

Query: 368 EQVKEEIKLNPSFR-----NYRVDSEQNRKINEIAEGLKSGK 404
              KE IK     R      YR+ ++QN +I +I+  L  GK
Sbjct: 369 GWEKETIKSRDYERRNLSKTYRLSAKQNLEIIKISNALAQGK 410
 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 40/106 (37%), Positives = 51/106 (47%), Gaps = 15/106 (14%)

Query: 65  KITAFVVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVSNAND 124
           K T+F V  NE    FNLK  LLVLA+  +   I YC+N   +       E++L+S    
Sbjct: 217 KETSFFVFQNEPSDTFNLKKTLLVLARAFSQAAICYCQNASAN-------EVDLISTE-- 267

Query: 125 FRGVFGEVL----GIVKDTFGDLLQLLTNLKNKEIEFNFHKKINYG 166
             G +GEV     GI       L Q LT LK+K   F F K+ N G
Sbjct: 268 -PGSYGEVWDTFNGIAFSAPVQLPQFLTRLKDKVYTF-FKKQPNSG 311
>ref|NP_222748.1| putative [Helicobacter pylori J99]
          Length = 565

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 37/236 (15%)

Query: 210 IEDYLILDNLKSCFVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKLGFEPTGIFYCENA 269
           + D L+     S FV QN+P+            FNLK  LL L +   F    I YC+NA
Sbjct: 238 LNDPLLPSKEVSFFVFQNEPS----------NSFNLKDQLLDLAKY--FNQEAICYCQNA 285

Query: 270 NTHKIELI-GNDSDFREVLLEFS---------ENIPKAPNELPQFLTNFKNSKIPNGNIS 319
            T K++L+   + DF +V + F+         ++I +  N++  F   F      N  + 
Sbjct: 286 ETGKVDLVLATEKDFGKVDMTFTGITFTIPLTQSITRLHNKVYTF---FDKQGKDNYGVF 342

Query: 320 FSPPKNSP--SISSYALSDKIKREVRDTFDRYL----WHGYSKIPQEKRIAKIKEQVKEE 373
           F     +   ++S   ++D+  R + +    ++    +HG  +      I K + Q  + 
Sbjct: 343 FDELSTTKLKAMSIPKIADEFYRHLENRVKSFIRARQYHGSPRTFDADDIEKYELQAIKR 402

Query: 374 IKLN--PSFRNYRVDSEQNRKINEIAEGLKSGKIIGK----KVIANAFDLNASLLF 423
           + L      ++++     N KIN +A  L+ GK + K    KV+AN  D +A   F
Sbjct: 403 LDLQRCAKSKSFKASYNHNIKINNLANALRQGKEVSKTLITKVLANTIDTDAGYCF 458
 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 26/156 (16%)

Query: 18  KAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHLFVSAKITAFVVSTNESD 77
           + ++L+S+L++K+  +F+ + + +         +  +   D L  S +++ FV   NE  
Sbjct: 210 RTQELKSLLDQKR--HFLGYLQVTG--------YWKDKLNDPLLPSKEVSFFVFQ-NEPS 258

Query: 78  TIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELV-SNANDFRGVFGEVLGIV 136
             FNLK+ LL LAK  N   I YC+N    K       ++LV +   DF  V     GI 
Sbjct: 259 NSFNLKDQLLDLAKYFNQEAICYCQNAETGK-------VDLVLATEKDFGKVDMTFTGI- 310

Query: 137 KDTFG-DLLQLLTNLKNKEIEFNFHK--KINYGLPF 169
             TF   L Q +T L NK   F F K  K NYG+ F
Sbjct: 311 --TFTIPLTQSITRLHNKVYTF-FDKQGKDNYGVFF 343
>ref|NP_224022.1| putative [Helicobacter pylori J99]
          Length = 309

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 11/86 (12%)

Query: 18  KAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHLFVSAKITAFVVSTNESD 77
           +AK+L+S LE K++  FI F ++   + ++P+           F+  +  +F+V  NE  
Sbjct: 220 RAKKLQSYLESKRD--FIGFVQTLNSLKDSPQ---------DPFLPNEEISFLVFANEPT 268

Query: 78  TIFNLKNYLLVLAKNLNNRDIWYCEN 103
            IFNL++YLLVLA+  N + I YCE+
Sbjct: 269 IIFNLRDYLLVLAQIFNQQAICYCES 294
>ref|NP_224023.1| putative [Helicobacter pylori J99]
          Length = 243

 Score = 34.3 bits (77), Expect = 0.006
 Identities = 17/54 (31%), Positives = 31/54 (56%)

Query: 363 IAKIKEQVKEEIKLNPSFRNYRVDSEQNRKINEIAEGLKSGKIIGKKVIANAFD 416
           +A I+++ +E I+     +  +   +QN +IN+IA  LK  KI+ K+ I +  D
Sbjct: 33  VADIEQEEREVIEWREKKKASKQSYKQNLQINKIANDLKRDKIVDKRTILSVID 86
>ref|NP_222801.1| putative [Helicobacter pylori J99]
          Length = 450

 Score = 30.8 bits (68), Expect = 0.069
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 344 DTFDRYLWHGYSKIPQEKRIAKIKEQ-VKEEIKLNPS---FRNYRVDSEQNRKINEIAEG 399
           D  +  + HGY K       AK+ E  V+E +KL P+   F N++V   + R        
Sbjct: 148 DRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVIS 207

Query: 400 LKSGKIIGKKVIANA 414
             + ++  K V+ NA
Sbjct: 208 EDAEEVYAKFVLVNA 222
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 847

 Score = 28.1 bits (61), Expect = 0.45
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 248 YLLGLKEKLGFEPTGIFYCENANTHKIELIGNDSDFREVLLE---FSENIPKAPNELPQF 304
           YL+GLKE   ++  G+   + +N H       +   +E   E   F E +          
Sbjct: 308 YLMGLKEAFLYKVVGVVCEQFSNVHAYLKESKEMVMKECFEEEERFLETLESGMELFNLS 367

Query: 305 LTNFKNSKIPNGNISF 320
           LT+   +KI +G I+F
Sbjct: 368 LTHLNENKIFDGKIAF 383
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 744

 Score = 27.7 bits (60), Expect = 0.59
 Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 12/189 (6%)

Query: 136 VKDTFGDLLQLLTNLKNKEIEFNFHKKINYG----LPFGIIFIASNSDNPIDIDNKTKKL 191
           V+DT G    + +  K+K      +    Y     +P G+I + S     + ID     +
Sbjct: 470 VRDTDGSTYDVCSRFKDKPYTAGSYPNSIYTDCSQVPAGLIGVTSAVWQQL-IDQNALPV 528

Query: 192 KSCFRDDESNCFIDCPITIEDYLI-LDNLKSCFVIQNKPNVTLFDNDENDRPFNLKRYLL 250
                  ++N +++  +  +D+   + +  S  +  +K + T +   +  RPF     LL
Sbjct: 529 DFTNLSSQTN-YLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGAP--LL 585

Query: 251 GLKEKLGFEPTGIFYCENANTHKIELIGNDSDFREVLLEFSENIPKAPNELPQFLTNFKN 310
           G+  K+G++     Y    +++ I          E + + S  +    + L  F+TN+ N
Sbjct: 586 GVNLKMGYQKYFNDYL-GLSSYGIIKYNYAQANNEKIQQLSYGV--GMDVLFDFITNYTN 642

Query: 311 SKIPNGNIS 319
            K P  N++
Sbjct: 643 EKNPKSNLT 651
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
          Length = 613

 Score = 27.3 bits (59), Expect = 0.77
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 36  WFNESSAIIHNTPKVFEGESFFDHLFVSA-KITAFVVSTNESDTIFNLKNYLLVLAKNLN 94
           +F +  +I  N PK    ES  D L      I A+ ++ N +  I +L    L      N
Sbjct: 99  FFIDFLSIYSNIPK----ESLKDALNTKGYTILAYNLTPNMAANIRDLNKKFLAFGVFQN 154

Query: 95  NRDIWYCENTICDKKGTYNIEIELVSNANDFRGVFGEVLGIVKDTFGDLLQLLTNLKNKE 154
            +D     + +  K+G  NIE+  VS    ++     ++G V+    D L L T  K  E
Sbjct: 155 FKD---AHDKVWQKQGL-NIEVSGVSRHYPYQNSLEPIIGYVQKQEEDKLTLTTGKKGVE 210
 Score = 26.6 bits (57), Expect = 1.3
 Identities = 48/209 (22%), Positives = 79/209 (36%), Gaps = 34/209 (16%)

Query: 213 YLILDNLKSCFVIQNKPNVTLFDNDENDRP--FNLKRYLLGLKE---KLGFEPTGIFYCE 267
           +L++   K+ F   N P + +   D   R   ++   Y L   +   KLGF+        
Sbjct: 37  FLMVAFKKAFFAQANMPTLVMIKQDTATRGTIYSQDNYSLATSQTLFKLGFDTRF----- 91

Query: 268 NANTHKIELIGNDSDFREVLLEFSENIPKAPNELPQFLTNFKNSKIPNGNISFSPPKNSP 327
                   L  N  DF    L    NIPK   E  +   N K   I   N++ +   N  
Sbjct: 92  --------LNPNKEDFFIDFLSIYSNIPK---ESLKDALNTKGYTILAYNLTPNMAANIR 140

Query: 328 SISSYALSDKIKREVRDTFDRYLWH---------GYSK-IPQEKRIAKI--KEQVKEEIK 375
            ++   L+  + +  +D  D+ +W          G S+  P +  +  I    Q +EE K
Sbjct: 141 DLNKKFLAFGVFQNFKDAHDK-VWQKQGLNIEVSGVSRHYPYQNSLEPIIGYVQKQEEDK 199

Query: 376 LNPSFRNYRVDSEQNRKINEIAEGLKSGK 404
           L  +     V+  QN  +     G++SGK
Sbjct: 200 LTLTTGKKGVEKSQNNLLEAQQNGIRSGK 228
>ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99]
          Length = 604

 Score = 26.9 bits (58), Expect = 1.0
 Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 2/68 (2%)

Query: 103 NTICDKKGTYNIEIELVSNANDFRGVFGEVLGIVKDTFGDLLQLLTNLKNKEIEFNFHKK 162
           +T+ D +   +  IE    A  F  VF  +  I  D F DL + L  L+  +   NF  +
Sbjct: 280 DTLTDAENPTSKPIEGFMPAKPF--VFAGLYPIETDRFEDLREALLKLQLNDCALNFEPE 337

Query: 163 INYGLPFG 170
            +  L FG
Sbjct: 338 SSVALGFG 345
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
          Length = 681

 Score = 26.9 bits (58), Expect = 1.0
 Identities = 19/66 (28%), Positives = 30/66 (44%), Gaps = 10/66 (15%)

Query: 150 LKNKEIEFNFHKKINYG----------LPFGIIFIASNSDNPIDIDNKTKKLKSCFRDDE 199
           L +K+ E    K+I  G          +P+ I FI +  D  I+ + + K+L   F DD+
Sbjct: 182 LLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDD 241

Query: 200 SNCFID 205
            N   D
Sbjct: 242 ENSVSD 247
>ref|NP_223327.1| putative [Helicobacter pylori J99]
          Length = 171

 Score = 26.2 bits (56), Expect = 1.7
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 282 DFREVLLEFSENIPKAPNELPQFLT-NF-KNSKIPNGNISFS-------PPKNSPSISSY 332
           D REV L+  EN+ +    LP   T NF K  K  + N+ F+       PP N  +  ++
Sbjct: 104 DVREVSLQLLENLRQKDGNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENF 163

Query: 333 ALSDK 337
             SD+
Sbjct: 164 DNSDE 168
>ref|NP_223064.1| putative [Helicobacter pylori J99]
          Length = 189

 Score = 25.8 bits (55), Expect = 2.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 7  IIFISDSIDDYKAKQLRSILERKKECNFIWFNESSAIIHNTPKVFE 52
          ++     I  YK +QL+ IL++    N   F E S I   T K FE
Sbjct: 54 LVLFQGVISSYKERQLKRILQKIDAMNGFEFEEYSKIFF-TSKGFE 98
>ref|NP_222733.1| putative [Helicobacter pylori J99]
          Length = 350

 Score = 25.8 bits (55), Expect = 2.2
 Identities = 24/97 (24%), Positives = 44/97 (44%), Gaps = 12/97 (12%)

Query: 182 IDIDNKTKKLKSCFRDDESNCFIDCPITIEDYLILDNLKSCFVIQNKPNVTLFDNDENDR 241
           I + NK K LK  +R+          +  ED +I+ N +  FV+ +   + +  N+E + 
Sbjct: 226 IQVSNKIKNLKE-YRE----------MVFEDGVIVKNGRY-FVLPHNARLVVARNEEENH 273

Query: 242 PFNLKRYLLGLKEKLGFEPTGIFYCENANTHKIELIG 278
             +++  L+   E LG +       +NA+    EL G
Sbjct: 274 KLDIEHPLMDKIELLGCKGPLSLVDKNASQEDKELAG 310
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
          Length = 549

 Score = 25.4 bits (54), Expect = 2.9
 Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 4/58 (6%)

Query: 318 ISFSPPKNSPSISSYALSDKIKREVRDTFDRYLWHGYSKIPQEKRIAKIKEQVKEEIK 375
           I+F  P N   I SY +++   R V D  D Y + G      +K+I KI+++  +EIK
Sbjct: 201 IAFKSPNNL--IPSYVITNGY-RPVAD-LDSYTFSGVLLENTDKKIEKIEDKDAKEIK 254
>ref|NP_223841.1| 50S RIBOSOMAL PROTEIN L1 [Helicobacter pylori J99]
          Length = 234

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (54%)

Query: 142 DLLQLLTNLKNKEIEFNFHKKINYGLPFG 170
           D+ + +TN K+ ++ F   KK N   P G
Sbjct: 149 DIAKAVTNAKSGQVNFRVDKKGNVHAPIG 177
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 363

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 306 TNFKNSKIPNGNISFSPPKNSPSISSYALSDKIKR 340
           TN K  K+P GN       N  S S   L  +I R
Sbjct: 202 TNEKGEKVPKGNYKIKAEYNLDSQSKQYLQTRIGR 236
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
          Length = 442

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 78  TIFNLKNYLLVLAKNLNNRDIWYCE 102
           TI NL+  L      L++R+IWY E
Sbjct: 76  TIENLEKVLAKRRHQLHHRNIWYAE 100
>ref|NP_223432.1| URIDYLATE KINASE [Helicobacter pylori J99]
          Length = 240

 Score = 24.3 bits (51), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 113 NIEIELV-SNANDFRGVFGEVLGIVKDTFGDLLQLLTNLKN 152
           +IE+ +V    N  RGV     GI++ T GD + +L  + N
Sbjct: 46  DIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVIN 86
>ref|NP_223193.1| cag island protein [Helicobacter pylori J99]
          Length = 199

 Score = 24.3 bits (51), Expect = 6.5
 Identities = 13/49 (26%), Positives = 25/49 (50%)

Query: 77  DTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVSNANDF 125
           DT +N  N L++ + N   ++  + E+TI ++        E+  N N+F
Sbjct: 67  DTYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNF 115
  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,302
Number of Sequences: 1491
Number of extensions: 26547
Number of successful extensions: 113
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 27
length of query: 426
length of database: 494,079
effective HSP length: 80
effective length of query: 346
effective length of database: 374,799
effective search space: 129680454
effective search space used: 129680454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)