BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645298|ref|NP_207468.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222748.1| putative [Helicobacter pylori J99] 65 1e-12
ref|NP_224023.1| putative [Helicobacter pylori J99] 44 4e-06
ref|NP_224181.1| putative [Helicobacter pylori J99] 33 0.005
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 30 0.070
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 29 0.12
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 28 0.16
ref|NP_223323.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_222939.1| putative [Helicobacter pylori J99] 27 0.45
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 26 0.77
ref|NP_223761.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 26 0.77
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 26 0.77
ref|NP_223290.1| putative [Helicobacter pylori J99] 26 1.0
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 25 1.7
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 25 1.7
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 25 1.7
ref|NP_223158.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223136.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_222997.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 24 2.9
ref|NP_224139.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 23 5.0
ref|NP_223667.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Hel... 23 5.0
ref|NP_223705.1| putative chemotaxis protein [Helicobacter ... 23 6.5
ref|NP_224025.1| putative [Helicobacter pylori J99] 23 8.5
ref|NP_223676.1| putative [Helicobacter pylori J99] 23 8.5
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 23 8.5
ref|NP_223399.1| putative [Helicobacter pylori J99] 23 8.5
ref|NP_223093.1| putative [Helicobacter pylori J99] 23 8.5
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 65.1 bits (157), Expect = 1e-12
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 116 IQDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLK 175
I DL L + LS I AI Q EG+ L YALI+ + YN L NT +FIFD+ NP+
Sbjct: 459 ISDLATQLGNISPRLSKSIVTAIEQAEGIRLLYALIDKVSYNSLHNTLNFIFDIDNPMSD 518
Query: 176 ES-SQFIIEVPREAL 189
+S ++ ++EVPREAL
Sbjct: 519 QSLNELVVEVPREAL 533
Score = 64.3 bits (155), Expect = 3e-12
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 4 YCFITP--DDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNP 61
YCFI+ L N+ RL I+ AI Q + + L +A ID + YN L N FIFD+ NP
Sbjct: 456 YCFISDLATQLGNISPRLSKSIVTAIEQAEGIRLLYALIDKVSYNSLHNTLNFIFDIDNP 515
Query: 62 ------SQLAIKVPRKSLENDELPNTKKNIFNGLIRTIY 94
++L ++VPR++L+N +LP K + + + Y
Sbjct: 516 MSDQSLNELVVEVPREALKNVKLPQIKNELTSQIFDGAY 554
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 43.9 bits (102), Expect = 4e-06
Identities = 26/61 (42%), Positives = 38/61 (61%)
Query: 117 QDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKE 176
+DLL L+ + LS I I Q E + L+YALI++I++N LD+T F F VG+ L +
Sbjct: 97 KDLLKQLEKISASLSKDIVITIKQVEKLELNYALIDNIQHNTLDDTLDFTFIVGDSLSVQ 156
Query: 177 S 177
S
Sbjct: 157 S 157
Score = 40.8 bits (94), Expect = 3e-05
Identities = 23/59 (38%), Positives = 35/59 (58%), Gaps = 4/59 (6%)
Query: 6 FITPDDLKNLKERLFI----DIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGN 60
FI P DL E++ DI+ I Q +++ L++A ID+IQ+N LD+ F F VG+
Sbjct: 93 FIPPKDLLKQLEKISASLSKDIVITIKQVEKLELNYALIDNIQHNTLDDTLDFTFIVGD 151
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 33.5 bits (75), Expect = 0.005
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 29 QKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPRKSLENDELPNTKKNIF-- 86
+++ + L H+ +D I +NA + P +L+I K+LEN +L + +K +
Sbjct: 159 ERQNLGLIHSNLDKIAQTYKENAMFI------PIELSIVNSLKALENLQLASKEKELIEI 212
Query: 87 -----------NGLIRTIYGCIDDENSFLLENDKTIKDL 114
N + +++Y I DEN+ L E+ K + +L
Sbjct: 213 LQCFNPNILNANTIRKSVYIQIKDENTPLEESPKRLLNL 251
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 29.6 bits (65), Expect = 0.070
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 9/77 (11%)
Query: 83 KNIFNGLIRTIYGCIDDENSFLLEN--DKTIKDLNIQDLLGPLKTQAFPLSYIITDAINQ 140
K IFN I IY C D+++FL+ +K + I +L Q L I+
Sbjct: 296 KRIFNAPIVLIYNCYQDKDAFLVLEILKSVVKKVLILELHNERIIQLEKLKGIL------ 349
Query: 141 KEGVALDYALINDIKYN 157
E + L++AL ++K N
Sbjct: 350 -ETLGLEHALFEELKEN 365
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 28.9 bits (63), Expect = 0.12
Identities = 21/82 (25%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 25 NAINQKKRVALDHAQIDD-----IQYNVLDNAFYFIFDVGNPSQLAIKVPRKSLENDELP 79
N +K D+A + D ++ + ++ +FI PS L V + + N++L
Sbjct: 64 NEYERKIDPNFDYASLSDEEAEIVRKSTIEEKGFFI----PPSALFCNVLKNAPNNEDLN 119
Query: 80 NTKKNIFNGLIRTIYGCIDDEN 101
T +NIFN + ++ G +EN
Sbjct: 120 VTLQNIFNEIEKSSLGTPSEEN 141
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 28.5 bits (62), Expect = 0.16
Identities = 40/163 (24%), Positives = 66/163 (39%), Gaps = 21/163 (12%)
Query: 57 DVGNPSQLAIKVPRKSLENDELPNTKKNIFNGLIRTIYGCIDDENSFL-LENDKTIK--D 113
D N S +V + SLEN N K N NG +D+ +FL L N I D
Sbjct: 522 DAANGSTKLSEVSKGSLENSVF-NMKLNDVNGSFLEAQINLDNNGAFLSLPNGVKIPLYD 580
Query: 114 LNIQDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPL 173
D+ QA + + + +AL+Y+ + Y + + NP
Sbjct: 581 PTTADI------QASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISD---------NPT 625
Query: 174 LKESSQFIIEVPREALD--LENVDRLVEYTLSPNNHSQSSLVY 214
KES + IE+ ++A D N++ + + N HS + + +
Sbjct: 626 SKESKERFIELLKQAKDNLSINLNEEGKVIIQDNMHSNTKMQF 668
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 27.7 bits (60), Expect = 0.26
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 99 DENSFLLENDKTIKDLNIQDLLGPLKTQAFPL-SYIITDAINQKEGVALDY 148
DEN F E D T + N+ DLL + AF L + + I + +G+ LD+
Sbjct: 217 DENLFWQEIDTTERLENVIDLLWDMNIPAFILEKHALLQDIARSQGLLLDH 267
>ref|NP_222939.1| putative [Helicobacter pylori J99]
Length = 390
Score = 26.9 bits (58), Expect = 0.45
Identities = 18/79 (22%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
Query: 14 NLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAF------YFIFDVGNPSQLAIK 67
N++E + + + Q D + ID++++NV + F F+F + +AI
Sbjct: 186 NIEEERTMRFLQDVAQSVGFETDFSYIDEVEFNVEEGVFKNGLNHEFLFKLIPWENIAID 245
Query: 68 VPRKSLENDELPNTKKNIF 86
P +L + K IF
Sbjct: 246 EPELALLMQGMMENKNTIF 264
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 26.2 bits (56), Expect = 0.77
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 138 INQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKESSQFIIEVPREALDLENVDRL 197
+N GV D AL N KY L + + N LLK+ + + E LD + +L
Sbjct: 44 LNMLLGVQTDEALKN--KYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKL 101
Query: 198 VEYTLSPNNHSQ 209
L HSQ
Sbjct: 102 DALLLELQGHSQ 113
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 26.2 bits (56), Expect = 0.77
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 53 YFIFDVGNPSQLAIKVPRKSLENDELPN 80
Y+ D+ P +L ++VP K L+N E+ N
Sbjct: 482 YYHIDL-EPDELLVRVPNKRLDNTEINN 508
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 26.2 bits (56), Expect = 0.77
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 102 SFLLENDKTIKDLNIQDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDN 161
S + N ++I LNI K + L+ TD N+++ LDY IN + D
Sbjct: 186 SVFVSNKRSIGKLNILSKSELEKREQEXLAKTETDNFNKQDKHKLDYRKINYESKEIDDG 245
Query: 162 TFHFIFDVGNPLLKESSQ 179
F I D N + E ++
Sbjct: 246 KFIRIGDEVNHIFIEKAK 263
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 26.2 bits (56), Expect = 0.77
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 6 FITPDDLKNLKERLFIDIINAINQKKRV 33
FIT D++K+L ERL D + + K++
Sbjct: 538 FITKDEVKSLLERLAKDYPTIVEESKKI 565
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 25.8 bits (55), Expect = 1.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 192 ENVDRLVEYTLSPNNHSQSSLVYHISEGSYIIHLIDD 228
EN ++L++ + N SQ+ + + +YI+HLIDD
Sbjct: 33 ENCEKLLQDIV---NISQNKKTHFMGSITYILHLIDD 66
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 25.0 bits (53), Expect = 1.7
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 85 IFNGLIRTIYGCIDDENSFLLENDKTIKDLNIQDLLGPLKTQAFPLSYIITDAINQKEGV 144
+F L ++YG + S ++ T DL + G F L ++
Sbjct: 121 LFYDLSASLYGS-QESQSIIISTYGTYMDLLLNAYNGDKFFAGFNLGIAFAGVYDRLSDA 179
Query: 145 ALDYALINDI---KYNLLDNTFHFIFDVGNPLLKESSQF 180
L L+ + K NL N F F+ D+G L E +QF
Sbjct: 180 LLYQTLLQNTFGGKVNL--NGFQFLVDLGVRLGNEHNQF 216
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 25.0 bits (53), Expect = 1.7
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 27 INQKKRVALDHAQID------DIQYNVLDNAFYFIFDVGNPSQLAIKVPR 70
+ +KKR ++ +++ DIQY+++++ + D+ P QL + + R
Sbjct: 17 VKEKKRESVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLR 66
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 25.0 bits (53), Expect = 1.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 4 YCFITPDDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVL 48
+ + T +DL L +RLF ++ +N ++ + ++D Q +V+
Sbjct: 271 WAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVI 315
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 24.6 bits (52), Expect = 2.2
Identities = 10/28 (35%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Query: 53 YFIFDVGNPSQLAIKVPRKSLENDELPN 80
Y+ D+ P +L ++VP + L+N E+ N
Sbjct: 402 YYRIDL-KPDELLVRVPHQRLDNTEINN 428
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 24.6 bits (52), Expect = 2.2
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 42 DIQYNVLDNAF--YFIFDVGNPSQLAIKVPRKSLENDELPNTKKNIFNGLIRTI 93
DIQ N LDNA FI ++ P + K L N+ P KK F L + I
Sbjct: 71 DIQKNALDNALRTLFIHELEQPLNSEQQNLAKELLNE--PVDKKENFESLCQEI 122
>ref|NP_222997.1| putative [Helicobacter pylori J99]
Length = 100
Score = 24.6 bits (52), Expect = 2.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 115 NIQDLLGPLKTQAFPLSYIITDAINQKEGVALDYALI 151
N+ LL L+ + L ++D ++++ G+AL ALI
Sbjct: 4 NLDSLLENLRAEIDALDNELSDLLDKRLGIALKIALI 40
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 24.3 bits (51), Expect = 2.9
Identities = 12/42 (28%), Positives = 21/42 (49%)
Query: 71 KSLENDELPNTKKNIFNGLIRTIYGCIDDENSFLLENDKTIK 112
K + + E N K I ++T+Y +D+ + LE D I+
Sbjct: 905 KKVIDKEDRNYPKKINTKALKTLYDNLDENEALALETDACIR 946
>ref|NP_224139.1| putative [Helicobacter pylori J99]
Length = 208
Score = 24.3 bits (51), Expect = 2.9
Identities = 19/100 (19%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 11 DLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPR 70
+L+ KE L +N+ +AL++ ++ ++N+ ++ + + LA +
Sbjct: 105 NLERAKEFLVFVDDEKVNEMSVLALENLRVLLSEHNIKNDLAKYAMPESYKTHLAYSINA 164
Query: 71 KSLEN-DELPNTKKNI--FNGLIRTIYGCIDDENSFLLEN 107
+SL+N L ++ K + L + ++ + E+ +L E+
Sbjct: 165 RSLQNLLTLRSSNKALKEMQDLAKALFDALPYEHQYLFED 204
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 23.5 bits (49), Expect = 5.0
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 7 ITPDDLKNLKERLFIDIINAINQKKRVAL 35
ITPD+LK ER+ + I+ I+++ ++ +
Sbjct: 610 ITPDNLKEYLERMVFE-IDPIDEENKIGI 637
>ref|NP_223667.1| putative [Helicobacter pylori J99]
Length = 227
Score = 23.5 bits (49), Expect = 5.0
Identities = 27/101 (26%), Positives = 41/101 (39%), Gaps = 14/101 (13%)
Query: 142 EGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKESSQFII-----EVPREALDLENV-- 194
EGV LD IN Y + FI + NPL S I + A EN+
Sbjct: 111 EGVILDLKRINFKSYYPNNKNALFINNKKNPLSSASKVHIALNLLWTIRNRAYHWENLLK 170
Query: 195 ------DRLVEYTLSPNNHSQSSLVYHIS-EGSYIIHLIDD 228
R+ Y + ++ ++ + +IS E S I+ +DD
Sbjct: 171 IQPNKRPRITTYFIGLKDNDRARIPMNISVEPSKIVLFLDD 211
>ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Helicobacter pylori J99]
Length = 323
Score = 23.5 bits (49), Expect = 5.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 105 LENDKTIKDLNIQDLL 120
+ NDKT+K LN+Q L+
Sbjct: 136 VSNDKTLKILNLQGLI 151
>ref|NP_223705.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 312
Score = 23.1 bits (48), Expect = 6.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 105 LENDKTIKDLNIQDLLGPLK 124
+ENDKT+ L+++ +L LK
Sbjct: 144 IENDKTLLILDLESILDDLK 163
>ref|NP_224025.1| putative [Helicobacter pylori J99]
Length = 240
Score = 22.7 bits (47), Expect = 8.5
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 6 FITPDDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFI 55
F T D + N RLF DI+ A Q + L+ ++ + YF+
Sbjct: 129 FETFDHMDNTDLRLFCDILGAYAQGQEETLNLTKLWAVMLPKNQKEAYFV 178
>ref|NP_223676.1| putative [Helicobacter pylori J99]
Length = 218
Score = 22.7 bits (47), Expect = 8.5
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 6 FITPDDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFI 55
F T D + N RLF DI+ A Q + L+ ++ + YF+
Sbjct: 112 FETFDHMDNTDLRLFCDILGAYAQGQEETLNLTKLWAVMLPKNQKEAYFV 161
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 22.7 bits (47), Expect = 8.5
Identities = 13/42 (30%), Positives = 20/42 (46%)
Query: 170 GNPLLKESSQFIIEVPREALDLENVDRLVEYTLSPNNHSQSS 211
G P KE Q + E+L EN+ +E N+H++ S
Sbjct: 300 GYPYSKEWHQVAFKTSFESLVFENLVGKIETFTELNDHNKKS 341
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 22.7 bits (47), Expect = 8.5
Identities = 11/46 (23%), Positives = 23/46 (49%)
Query: 81 TKKNIFNGLIRTIYGCIDDENSFLLENDKTIKDLNIQDLLGPLKTQ 126
TK + + + + ID+E +L + K I+D + D + +K +
Sbjct: 71 TKTGVGKPITQHLEKYIDEEKGLILWDTKGIEDKDYHDTMQSIKKE 116
>ref|NP_223093.1| putative [Helicobacter pylori J99]
Length = 165
Score = 22.7 bits (47), Expect = 8.5
Identities = 13/41 (31%), Positives = 24/41 (57%), Gaps = 3/41 (7%)
Query: 149 ALINDIKYNLLDNTFHFIFDVGNPLLKESSQFIIEVPREAL 189
ALI+D + L +T F F+ P+L ++++ + RE+L
Sbjct: 91 ALIHDFE---LYSTTGFDFNDNTPILAYANKYFVSKERESL 128
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.142 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,773
Number of Sequences: 1491
Number of extensions: 12574
Number of successful extensions: 65
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 32
length of query: 228
length of database: 494,079
effective HSP length: 75
effective length of query: 153
effective length of database: 382,254
effective search space: 58484862
effective search space used: 58484862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)