BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645300|ref|NP_207470.1|
methylated-DNA--protein-cysteine methyltransferase (dat1)
[Helicobacter pylori 26695]
         (168 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223336.1|  METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRA...   330  9e-93
ref|NP_223645.1|  putative [Helicobacter pylori J99]               25  0.85
ref|NP_223163.1|  PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN...    24  1.9
ref|NP_223568.1|  putative Outer membrane protein [Helicobac...    23  3.2
ref|NP_224002.1|  TYPE II DNA MODIFICATION ENZYME (METHYLTRA...    23  5.5
ref|NP_223430.1|  GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH...    23  5.5
ref|NP_223544.1|  IS606 TRANSPOSASE [Helicobacter pylori J99]      22  7.2
ref|NP_223344.1|  IRON(III) DICITRATE TRANSPORT PROTEIN [Hel...    22  9.3

>ref|NP_223336.1| METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE [Helicobacter
           pylori J99]
          Length = 168

 Score =  330 bits (847), Expect = 9e-93
 Identities = 157/168 (93%), Positives = 163/168 (96%)

Query: 1   MVLYHYYFKTPKSFPLEYLHLCANESHLLRLDFDAANFSHNTPMNTPLKLSVQALERYFL 60
           M LYHYYFKTPKSFPLEYLHLCANESHLLRLDFDA NFSH+TPMNTPLKLSVQALERYFL
Sbjct: 1   MTLYHYYFKTPKSFPLEYLHLCANESHLLRLDFDATNFSHHTPMNTPLKLSVQALERYFL 60

Query: 61  GQLFEFNTPLDLIGTFFQKQVWSALMTIPYGKTKSYDEIAKLINNPRSCRAVGNANRNNP 120
           GQLFEF+ PLDLIGTFFQKQVWSALMTIPYGKTKSYDEIAKLINNP+SCRA+GNANRNNP
Sbjct: 61  GQLFEFDAPLDLIGTFFQKQVWSALMTIPYGKTKSYDEIAKLINNPKSCRAIGNANRNNP 120

Query: 121 ISLIVPCHRVVRKNGTLGGYNGGIEVKKWLLEFESKILNQQAKNSLIS 168
           ISLIVPCHRVVRKNG LGGYNGGIEVKKWLLEFESKILN++AKN LIS
Sbjct: 121 ISLIVPCHRVVRKNGALGGYNGGIEVKKWLLEFESKILNERAKNFLIS 168



>ref|NP_223645.1| putative [Helicobacter pylori J99]
          Length = 2231

 Score = 25.4 bits (54), Expect = 0.85
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 3    LYHYYFKT--PKSFPLEYLHLCANESHLLRLDFDAANFSHNTPMNTPLKLSVQALE 56
            +Y  Y +T   K   L ++ L   ++H  ++  +A + +H T    PL  + + LE
Sbjct: 1766 IYENYLETHATKGTQLGFIGLSTPKTHSQKVSLEALDNAHETENKNPLDKAQELLE 1821



>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
           pylori J99]
          Length = 353

 Score = 24.3 bits (51), Expect = 1.9
 Identities = 10/22 (45%), Positives = 13/22 (58%)

Query: 118 NNPISLIVPCHRVVRKNGTLGG 139
           N PIS  VP H+  +   T+GG
Sbjct: 50  NQPISSFVPSHQNKKDTPTMGG 71



>ref|NP_223568.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 514

 Score = 23.5 bits (49), Expect = 3.2
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 7   YFKTPKSFPLEYLHLCANESHLLRLDFDAANFS----HNTPMNTPLKLSVQALERYF--- 59
           YF T     L +L LC  E+   R      NFS    +N+ +NT  K  +   E +    
Sbjct: 6   YFLTSSLSLLSFL-LCPVEAFDYRFSGRVENFSKIGFNNSQINT--KKGIYPTESFIDIV 62

Query: 60  -LGQLFEFNTPLDLIGTFFQKQVWSALMTIPYGKTKSY 96
            L Q+     P           +  A+  IPY KTK Y
Sbjct: 63  TLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYY 100



>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 649

 Score = 22.7 bits (47), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 133 KNGTLGGYNGGIEVKKWLLEFESKILNQ 160
           K+G L  +NGG  +K + LE   +IL +
Sbjct: 540 KSGALKEFNGGGVIKVYELESYEEILRK 567



>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
           [Helicobacter pylori J99]
          Length = 776

 Score = 22.7 bits (47), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (71%)

Query: 142 GGIEVKKWLLEFESKILN 159
           GGIEV + L++F  KI N
Sbjct: 27  GGIEVLRTLIDFTPKIEN 44



>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
          Length = 442

 Score = 22.3 bits (46), Expect = 7.2
 Identities = 8/24 (33%), Positives = 13/24 (53%)

Query: 9   KTPKSFPLEYLHLCANESHLLRLD 32
           K P  +  +  H C N +H L+L+
Sbjct: 372 KVPPQYTSKTCHCCGNINHKLKLN 395



>ref|NP_223344.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
          Length = 767

 Score = 21.9 bits (45), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 52  VQALERYFLGQLFEFNTPLDL 72
           +QA   +  GQ F +N+P D+
Sbjct: 225 IQAQVNWLKGQGFRYNSPTDI 245



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.321    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,128
Number of Sequences: 1491
Number of extensions: 8613
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 168
length of database: 494,079
effective HSP length: 71
effective length of query: 97
effective length of database: 388,218
effective search space: 37657146
effective search space used: 37657146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)