BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645302|ref|NP_207472.1| hypothetical protein
[Helicobacter pylori 26695]
(36 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS P... 51 6e-09
>ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 315
Score = 50.8 bits (120), Expect = 6e-09
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 12 ELRNLPVSEPNEDSHVLCCKNKTDQ 36
ELRNL +SEPN+DSH LCCKNKTDQ
Sbjct: 291 ELRNLSLSEPNDDSHALCCKNKTDQ 315
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.130 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,002
Number of Sequences: 1491
Number of extensions: 689
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 36
length of database: 494,079
effective HSP length: 12
effective length of query: 24
effective length of database: 476,187
effective search space: 11428488
effective search space used: 11428488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 41 (20.4 bits)