BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645305|ref|NP_207475.1| hypothetical protein
[Helicobacter pylori 26695]
(168 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223340.1| putative [Helicobacter pylori J99] 339 3e-95
ref|NP_223927.1| putative [Helicobacter pylori J99] 232 5e-63
ref|NP_224109.1| putative [Helicobacter pylori J99] 26 0.50
ref|NP_224051.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_222849.1| L-lactate permease [Helicobacter pylori J99] 24 1.9
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 24 2.5
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 23 3.2
ref|NP_223089.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 23 5.5
ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 22 7.2
>ref|NP_223340.1| putative [Helicobacter pylori J99]
Length = 168
Score = 339 bits (869), Expect = 3e-95
Identities = 161/168 (95%), Positives = 165/168 (97%)
Query: 1 MDTTKENLNGSKERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW 60
MDTTKENLNGSKERLSD EYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW
Sbjct: 1 MDTTKENLNGSKERLSDLEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW 60
Query: 61 LVALIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDF 120
LV LIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLG+RLRDF
Sbjct: 61 LVGLIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGARLRDF 120
Query: 121 YVMLLTMPFIAAIHEVSAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW 168
YVMLLT+PFI A+HE+SAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW
Sbjct: 121 YVMLLTIPFIIAMHEISAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW 168
>ref|NP_223927.1| putative [Helicobacter pylori J99]
Length = 161
Score = 232 bits (591), Expect = 5e-63
Identities = 118/161 (73%), Positives = 133/161 (82%), Gaps = 7/161 (4%)
Query: 12 KERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVWLVALIAALLSN 71
K+RLSDWEY+WA+ALVY CISI RIFYDI+GSASD +FDPK SYY+WLV LIAALLSN
Sbjct: 4 KKRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSN 63
Query: 72 LLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDFYVMLLTMPFIA 131
LLF+P+GR Y + +P+F KAIFKARFFGAFY+AVLGSRLRDFYVMLLTMPFIA
Sbjct: 64 LLFDPRGRDC-YKSFQV--RYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTMPFIA 120
Query: 132 AIHEVSAYCGHPSNLLVEGLVILG----FQGFLKLCAKWGW 168
AIHE+SAYCGHPSN LVEGLV+LG F +LCAK GW
Sbjct: 121 AIHEISAYCGHPSNFLVEGLVMLGLVCVFGICSRLCAKLGW 161
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 26.2 bits (56), Expect = 0.50
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 19/137 (13%)
Query: 46 ASDPLFDPKYSYYVWLVALIAALLSNLLFNPKGRSVGYLMIETWQGF----PKFFKAIFK 101
A + F+ KY W++ L F ++ +ET++ PK I++
Sbjct: 181 AKEAFFEDKY----WILHDTTIYEMPLSFELGANALNTTHLETFKTLKNFRPKVLDTIYQ 236
Query: 102 ARFFGAFYDAVLG-----------SRLRDFYVMLLTMPFIAAIHEVSAYCGHPSNLLVEG 150
+ + DA+L ++R F + +PF V PS E
Sbjct: 237 NKPAVSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYEN 296
Query: 151 LVILGFQGFLKLCAKWG 167
L +LG + + WG
Sbjct: 297 LALLGLKFIIITLVVWG 313
>ref|NP_224051.1| putative [Helicobacter pylori J99]
Length = 259
Score = 24.6 bits (52), Expect = 1.4
Identities = 15/52 (28%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Query: 22 WAMALVYGGCISITTRIFYDINGSA--SDPLFDPKYSYYVWLVALIAALLSN 71
W L G CI + + + N S DP DP +++ VAL+ S+
Sbjct: 4 WHKRLAVGCCIVLLSCVMSANNVSIVRDDPPLDPTLPAWIYSVALLKVYFSD 55
>ref|NP_222849.1| L-lactate permease [Helicobacter pylori J99]
Length = 549
Score = 24.3 bits (51), Expect = 1.9
Identities = 12/35 (34%), Positives = 20/35 (56%), Gaps = 6/35 (17%)
Query: 58 YVWLVALIAA------LLSNLLFNPKGRSVGYLMI 86
++WL AL+A +S ++F KG S G+L +
Sbjct: 12 HIWLSALVALSPIALFFISLIVFKLKGYSAGFLSL 46
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 23.9 bits (50), Expect = 2.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 52 DPKYSYYVWLVALI 65
DPK+ YVWL AL+
Sbjct: 223 DPKHVVYVWLDALL 236
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 23.5 bits (49), Expect = 3.2
Identities = 11/46 (23%), Positives = 22/46 (46%), Gaps = 2/46 (4%)
Query: 105 FGAFYDAVLGSRLRDFYVMLLTMPFIAAIHEVSAYCGHPSNLLVEG 150
FG+ Y ++ RLR+ + +PF ++ + P L++ G
Sbjct: 7 FGSQYTQLIARRLRESGIYAEIVPFFESVENIQKKA--PKGLILSG 50
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 22.7 bits (47), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 85 MIETWQGFPKFFKAIFKARFFGAFYDAVLG 114
MI G+ K+F F RF+G D +LG
Sbjct: 133 MISVKFGYQKYFVPYFGTRFYG---DLLLG 159
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 22.7 bits (47), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (56%), Gaps = 6/28 (21%)
Query: 133 IHEVSAYCG------HPSNLLVEGLVIL 154
I EV Y G H +N LVEGL+I+
Sbjct: 41 IREVVKYHGNLTIISHENNSLVEGLIII 68
>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 791
Score = 22.3 bits (46), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 38 IFYDINGSASDPLFDPKYSYYVWLVALIAA 67
++ I + DPLFDP Y + +L +A
Sbjct: 324 LYTSIRNAQFDPLFDPNGVYAKFPTSLASA 353
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.144 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,469
Number of Sequences: 1491
Number of extensions: 7029
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 11
length of query: 168
length of database: 494,079
effective HSP length: 71
effective length of query: 97
effective length of database: 388,218
effective search space: 37657146
effective search space used: 37657146
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)