BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645306|ref|NP_207476.1| hypothetical protein
[Helicobacter pylori 26695]
(126 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223341.1| putative [Helicobacter pylori J99] 228 4e-62
ref|NP_223926.1| putative [Helicobacter pylori J99] 140 1e-35
ref|NP_223236.1| putative [Helicobacter pylori J99] 26 0.30
ref|NP_223443.1| putative Outer membrane protein [Helicobac... 25 0.51
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 25 0.87
ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicob... 25 0.87
ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacte... 23 2.5
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 22 4.3
ref|NP_223568.1| putative Outer membrane protein [Helicobac... 22 4.3
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 22 4.3
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 22 5.7
ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Heli... 22 7.4
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 22 7.4
ref|NP_222932.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 22 7.4
>ref|NP_223341.1| putative [Helicobacter pylori J99]
Length = 116
Score = 228 bits (581), Expect = 4e-62
Identities = 105/116 (90%), Positives = 110/116 (94%)
Query: 11 LNLNFMKGFVMSGLRTFSCVVVLCGAMANVAIASPKIEARGELGKFIGGGVGGFVGDKMG 70
+NL+FMKGFVMSGLRTFSCVVVLCGAM NVA+A PKIEARGELGKF+GG VG FVGDKMG
Sbjct: 1 MNLHFMKGFVMSGLRTFSCVVVLCGAMVNVAVAGPKIEARGELGKFVGGAVGNFVGDKMG 60
Query: 71 GFVGGAIGGYIGSEIGDRVEDYIRGVDREPQNKEPQAPREPIRDLYDYGYSFGHAW 126
GFVGGAIGGYIGSE+GDRVEDYIRGVDREPQNKEPQ PREPIRD YDYGYSFGHAW
Sbjct: 61 GFVGGAIGGYIGSEVGDRVEDYIRGVDREPQNKEPQTPREPIRDFYDYGYSFGHAW 116
>ref|NP_223926.1| putative [Helicobacter pylori J99]
Length = 117
Score = 140 bits (353), Expect = 1e-35
Identities = 76/115 (66%), Positives = 81/115 (70%), Gaps = 21/115 (18%)
Query: 16 MKGFVMSGLRTFSCVVVLCGAMANVAIASPKIEARGELGKFIGGGVGGFVGDKMGGFVGG 75
MKGFVMSGLRTFSCVVVLCGAMANVAIA PKIEARGE G+F GG VGG +G +GG +GG
Sbjct: 1 MKGFVMSGLRTFSCVVVLCGAMANVAIAGPKIEARGEFGRFWGGAVGGAIGGGVGGAMGG 60
Query: 76 AIGG----------------YIGSEIGDRVEDYIRGVDREPQNKEPQAPREPIRD 114
A+GG G EIGDRVEDYIRGVDR EPQAPREP D
Sbjct: 61 AVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDR-----EPQAPREPTYD 110
>ref|NP_223236.1| putative [Helicobacter pylori J99]
Length = 192
Score = 26.2 bits (56), Expect = 0.30
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 60 GVGGFVGDKMGGFVGGAIGGYIGSEI 85
G+GGFVGD++ ++G YI ++
Sbjct: 55 GIGGFVGDQIYFYIGRTNKAYIQKKL 80
>ref|NP_223443.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 499
Score = 25.4 bits (54), Expect = 0.51
Identities = 11/31 (35%), Positives = 19/31 (60%)
Query: 70 GGFVGGAIGGYIGSEIGDRVEDYIRGVDREP 100
G + G++GG+ G+ I D +D+I V +P
Sbjct: 85 GHHLDGSLGGWGGAVIYDSTKDFINEVTGKP 115
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 24.6 bits (52), Expect = 0.87
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 1 MCQTCLESQFLNLNFMKGFVMSGLRTFSCVVVLCGAMANVAIASPKIEARGE-LGKFIGG 59
+C +S FL ++ F++ F L M ++A K+ +G+ LG+F
Sbjct: 280 LCLFLADSSFLG-KYLWLFIVGVAFFFIGFATLEPIMQSLASKFAKVHEKGKVLGQFTTF 338
Query: 60 GVGGFVGDKMGGFVGGAIGGYIGSEIG 86
G +G FVGG GG +G
Sbjct: 339 GY-------LGSFVGGVSGGLSYHHLG 358
>ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 24.6 bits (52), Expect = 0.87
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 20 VMSGLRTFSCVVVLCGAMANVAIASPK 46
++S L+TF +V+C A A+V + +P+
Sbjct: 297 LVSMLQTFIVTLVVCSATASVILMAPE 323
>ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 347
Score = 23.1 bits (48), Expect = 2.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 38 ANVAIASPKIEARGELGKFIGGGVGGFVGDKMGGFVGGAIGGYIGSEIGDRVEDYIR 94
A + P E +G L IGGG +GG V G ++ + +YIR
Sbjct: 148 AAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLGGLVISKSIRVAGDKLDQSIVEYIR 204
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 22.3 bits (46), Expect = 4.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 93 IRGVDREPQNKEPQAPREPIRDLYDYGYSF 122
+ G+D + Q E + PI++ + + Y+F
Sbjct: 354 VLGMDNDAQTHENLEHKAPIKERFMFHYNF 383
>ref|NP_223568.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 514
Score = 22.3 bits (46), Expect = 4.3
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 31 VVLCGAMANVAIASPKIEARGELGKFIGGGVGGFVGDKMGGFVGGAIG-GYIGS 83
V L GA+A + K GK G V F+G G F +G Y G+
Sbjct: 83 VSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGT 136
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 22.3 bits (46), Expect = 4.3
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 75 GAIGGYIGSEIGDRVEDYIRGVD 97
GA I S++ D++E+ + G+D
Sbjct: 51 GASAEIIESKVTDKIEEAVMGID 73
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 21.9 bits (45), Expect = 5.7
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 97 DREPQNKEPQAPREPIRDLYDY 118
D + NK Q+ + IRD Y+Y
Sbjct: 352 DNQQDNKASQSIDKVIRDTYNY 373
>ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 453
Score = 21.6 bits (44), Expect = 7.4
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 11 LNLNFMKGFVMSGLRTFSCVVVLCGAMANVAIASPKIEARGELGKFI--GGGVGGFVGDK 68
L+ N M GF +S + F AM + +S + K I GG GG
Sbjct: 85 LHQNGMAGFGLSNMDEF--------AMGSTTESSCYGITKNPRDKNIVPGGSSGGSAAAV 136
Query: 69 MGGFVGGAIGGYIGSEI 85
GG A+G G I
Sbjct: 137 AGGLTVAALGSDTGGSI 153
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 21.6 bits (44), Expect = 7.4
Identities = 7/23 (30%), Positives = 15/23 (64%)
Query: 96 VDREPQNKEPQAPREPIRDLYDY 118
+D++ +K P++ I ++YDY
Sbjct: 91 IDQKTTSKNPRSTVGTITEIYDY 113
>ref|NP_222932.1| putative [Helicobacter pylori J99]
Length = 277
Score = 21.6 bits (44), Expect = 7.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 69 MGGFVGGAIGGYIGSEIGDRV 89
+GG +G +G +I I D++
Sbjct: 80 LGGLMGAILGSFILKVINDKI 100
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 21.6 bits (44), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 74 GGAIGGYIGSEIGDRVEDYIRGVDRE 99
G AIG ++ IG ++E Y R V E
Sbjct: 87 GEAIGYHVACLIGGKLESYPRIVFHE 112
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.145 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,909
Number of Sequences: 1491
Number of extensions: 5397
Number of successful extensions: 45
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 18
length of query: 126
length of database: 494,079
effective HSP length: 68
effective length of query: 58
effective length of database: 392,691
effective search space: 22776078
effective search space used: 22776078
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)