BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646198|ref|NP_207478.1| flagellar biosynthesis
protein [Helicobacter pylori 26695]
(105 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 166 1e-43
ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99] 25 0.61
ref|NP_223009.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS... 22 3.0
ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 5.1
ref|NP_223713.1| putative [Helicobacter pylori J99] 21 6.7
ref|NP_223908.1| NADH oxidoreductase I [Helicobacter pylori... 21 8.8
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 21 8.8
>ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 166 bits (421), Expect = 1e-43
Identities = 86/87 (98%), Positives = 87/87 (99%)
Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60
MRFFIFLILICPLICPLMSADSALPSVNLSLNAP+DPKQLVTTLNVIALLTLLVLAPSLI
Sbjct: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLI 60
Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPP 87
LVMTSFTRLIVVFSFLRTALGTQQTPP
Sbjct: 61 LVMTSFTRLIVVFSFLRTALGTQQTPP 87
>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 375
Score = 24.6 bits (52), Expect = 0.61
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 9/59 (15%)
Query: 13 LICPLMSADSALPSVN---------LSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILV 62
L+ PL+ + PS+N + LN+PN+P +L + L L IL+
Sbjct: 132 LLMPLVKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELIAWVKLALKHDFILI 190
>ref|NP_223009.1| putative [Helicobacter pylori J99]
Length = 331
Score = 22.3 bits (46), Expect = 3.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 2 RFFIFLILICPLIC 15
RF +FL+ IC +C
Sbjct: 3 RFVLFLLFICVCVC 16
>ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 339
Score = 22.3 bits (46), Expect = 3.0
Identities = 12/27 (44%), Positives = 13/27 (47%)
Query: 12 PLICPLMSADSALPSVNLSLNAPNDPK 38
P IC LM + PSV L A D K
Sbjct: 119 PAICTLMPSVGKRPSVLLDAGANTDCK 145
>ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 323
Score = 21.6 bits (44), Expect = 5.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 50 LTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 85
+ L V+A L L+ S I++F +R + +Q+T
Sbjct: 186 MNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKT 221
>ref|NP_223713.1| putative [Helicobacter pylori J99]
Length = 75
Score = 21.2 bits (43), Expect = 6.7
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 22 SALPSVNLSLNAPNDPKQL 40
SAL N +LNA N+ K +
Sbjct: 29 SALRQANTTLNAQNEEKDI 47
>ref|NP_223908.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 182
Score = 20.8 bits (42), Expect = 8.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 37 PKQL-VTTLNVIALLTLLVLAPSL 59
PK L V + V LLTL++ APS+
Sbjct: 89 PKILCVLSFGVALLLTLILSAPSI 112
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 20.8 bits (42), Expect = 8.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 87 PHSNFSLALFDIDF 100
P+SN LA+F + F
Sbjct: 135 PYSNIELAIFPVTF 148
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.144 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,034
Number of Sequences: 1491
Number of extensions: 2760
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 105
length of database: 494,079
effective HSP length: 65
effective length of query: 40
effective length of database: 397,164
effective search space: 15886560
effective search space used: 15886560
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 42 (20.8 bits)