BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645308|ref|NP_207479.1| flagellar biosynthetic
protein (fliP) [Helicobacter pylori 26695]
(153 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 294 8e-82
ref|NP_224088.1| putative [Helicobacter pylori J99] 30 0.038
ref|NP_223615.1| putative [Helicobacter pylori J99] 30 0.038
ref|NP_224109.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 26 0.43
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 24 2.1
ref|NP_223104.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 3.6
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 23 3.6
ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicob... 22 6.1
ref|NP_223672.1| putative [Helicobacter pylori J99] 22 8.0
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 22 8.0
>ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 294 bits (752), Expect = 8e-82
Identities = 150/153 (98%), Positives = 152/153 (99%)
Query: 1 MILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRI 60
+ILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKS LPFKEFMLKNTREKDLALFFRI
Sbjct: 96 LILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRI 155
Query: 61 RNLPNPKTPDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLP 120
RNLPNPKTPD+VSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLP
Sbjct: 156 RNLPNPKTPDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLP 215
Query: 121 PVMISLPFKILVFILVDGFNLLTENLVASFKMV 153
PVMISLPFKILVFILVDGFNLLTENLVASFKMV
Sbjct: 216 PVMISLPFKILVFILVDGFNLLTENLVASFKMV 248
Score = 22.7 bits (47), Expect = 4.7
Identities = 16/67 (23%), Positives = 30/67 (43%), Gaps = 10/67 (14%)
Query: 79 PAFMISELKTAFQIGFLLYLPFLVIDM--------VISSILMAMGMMMLPP--VMISLPF 128
P +++ L + L+ P L++ M V S + A+G PP +++SL
Sbjct: 37 PKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSL 96
Query: 129 KILVFIL 135
+ FI+
Sbjct: 97 ILTFFIM 103
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 29.6 bits (65), Expect = 0.038
Identities = 20/72 (27%), Positives = 32/72 (43%), Gaps = 7/72 (9%)
Query: 17 DTGIKPYMDKKISYT-------EAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP 69
+T +K Y D K+ E F +++ E N +KD +F R+ N PN + P
Sbjct: 28 ETYLKEYKDLKLEIETINLEIPERFSHASILSYELNASNKLKKDGVVFLRLENEPNLRLP 87
Query: 70 DEVSLSVLIPAF 81
S+ + AF
Sbjct: 88 VRYSVIGSMQAF 99
>ref|NP_223615.1| putative [Helicobacter pylori J99]
Length = 226
Score = 29.6 bits (65), Expect = 0.038
Identities = 25/84 (29%), Positives = 42/84 (49%), Gaps = 13/84 (15%)
Query: 67 KTPDEVSLSVLIPAFMIS---ELKTAF-QIGFLLYLPFLVIDMVISSILMAMGMMM--LP 120
K P++++ + IP + + E+ F Q G ++ LP L D L ++G + +
Sbjct: 120 KLPEDMNPTTAIPTYCLKGEREVLMGFSQNGGMVELPHLAFD---HQFLKSLGFNLKEIM 176
Query: 121 PVMI----SLPFKILVFILVDGFN 140
P M+ S+PF+ L FI GFN
Sbjct: 177 PFMLLSAPSVPFEFLCFIDTPGFN 200
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 26.9 bits (58), Expect = 0.25
Identities = 21/78 (26%), Positives = 40/78 (50%), Gaps = 7/78 (8%)
Query: 74 LSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGM-----MMLPPVMISLPF 128
LSVLI F S + ++ LL L F++I +V+ + A+G +++P + + PF
Sbjct: 280 LSVLIAYFSPSLAR--YENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPF 337
Query: 129 KILVFILVDGFNLLTENL 146
+ + + + F L + L
Sbjct: 338 FVFLALSLWYFKKLNKRL 355
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 26.2 bits (56), Expect = 0.43
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 9 EPSLKKAYDTGIKPYMDKKISYTEAFEKS 37
EP+LKK T +KP M S TE +K+
Sbjct: 273 EPTLKKETPTTLKPIMPISASNTENHDKT 301
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 23.9 bits (50), Expect = 2.1
Identities = 13/32 (40%), Positives = 20/32 (61%), Gaps = 2/32 (6%)
Query: 94 FLLYLPFLVIDMVIS--SILMAMGMMMLPPVM 123
FLL LP L+I MV++ S ++ G + P V+
Sbjct: 86 FLLLLPVLIILMVVAFLSNVLQFGWLFAPKVI 117
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 23.5 bits (49), Expect = 2.8
Identities = 17/59 (28%), Positives = 32/59 (53%)
Query: 82 MISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFN 140
+I L T IGFL++L FL++ + I + ++ ++I+L F ++ I D F+
Sbjct: 341 IIHVLATRGIIGFLIWLFFLLVIVKIFWSGIKQNSLISFFILITLAFYLIFGIGFDPFD 399
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.1 bits (48), Expect = 3.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 17 DTGIKPYMDKKISYTEAFEKSALPFKE 43
D G PY + +Y E FEK + + E
Sbjct: 1092 DQGDTPYHLRNCAYLEDFEKEKIVYPE 1118
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 23.1 bits (48), Expect = 3.6
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 2 ILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKN 48
I +F++ + + ++ +++ K YT AF K +E M +N
Sbjct: 134 IFSFYVFSTTFTSSKHPNLQVFIEDKNYYTNAFIKPQKENQENMSEN 180
>ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 22.3 bits (46), Expect = 6.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 119 LPPVMISLPFKILVFILVDGFNLLTENLVASFK 151
L PVM+ L +++I+V F+L + + F+
Sbjct: 209 LAPVMVLLYLIAIIYIIVSHFDLALQAIKLIFE 241
>ref|NP_223672.1| putative [Helicobacter pylori J99]
Length = 217
Score = 21.9 bits (45), Expect = 8.0
Identities = 15/52 (28%), Positives = 22/52 (41%), Gaps = 3/52 (5%)
Query: 11 SLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRN 62
+L+K +D K + S E + PF F N R KDL+ +N
Sbjct: 158 TLEKMFDVLTKKML---FSVAELNDNRIDPFSSFETINNRGKDLSTLELFKN 206
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 21.9 bits (45), Expect = 8.0
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 12/71 (16%)
Query: 76 VLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFIL 135
+ I + ++S L + + LY PFL + L M P M+++ F +LVF+
Sbjct: 132 LFILSLIVSVLLSLKGLDTFLYAPFL------KNPLFEM------PTMLAVGFWVLVFLS 179
Query: 136 VDGFNLLTENL 146
LT+ L
Sbjct: 180 TSNAVNLTDGL 190
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.145 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,807
Number of Sequences: 1491
Number of extensions: 6138
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 14
length of query: 153
length of database: 494,079
effective HSP length: 70
effective length of query: 83
effective length of database: 389,709
effective search space: 32345847
effective search space used: 32345847
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)