BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644700|ref|NP_206870.1| urease accessory protein
(ureE) [Helicobacter pylori 26695]
(170 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222787.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 332 4e-93
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 26 0.65
ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 25 1.1
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 23 3.2
ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99] 23 4.2
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 5.5
ref|NP_223983.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [... 23 5.5
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 22 7.2
ref|NP_223496.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS PRO... 22 7.2
ref|NP_223330.1| putative [Helicobacter pylori J99] 22 9.4
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 22 9.4
>ref|NP_222787.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 170
Score = 332 bits (850), Expect = 4e-93
Identities = 169/170 (99%), Positives = 170/170 (99%)
Query: 1 MIIERLVGNLRDLNPLDFSVDHVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQG 60
MIIERLVGNLRDLNPLDF+VDHVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQG
Sbjct: 1 MIIERLVGNLRDLNPLDFNVDHVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQG 60
Query: 61 DILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEK 120
DILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEK
Sbjct: 61 DILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEK 120
Query: 121 PTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVSLASDFKVVVK 170
PTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVSLASDFKVVVK
Sbjct: 121 PTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVSLASDFKVVVK 170
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 25.8 bits (55), Expect = 0.65
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 104 ALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHS 153
A+ G +K PTLAL + G +N + SK+ +++ ++ HS
Sbjct: 716 AILTGGEDTAYKMLKANPTLALSAETGGKNATIVSKMADRDQAIKNVIHS 765
>ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 184
Score = 25.0 bits (53), Expect = 1.1
Identities = 13/29 (44%), Positives = 19/29 (64%), Gaps = 1/29 (3%)
Query: 75 ILDSEVIHIQAKSVAEVAKICYEIGNRHA 103
+LD+ + + AK VAE K +EIG +HA
Sbjct: 151 VLDTMLKKVPAK-VAETNKKAFEIGKKHA 178
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 23.5 bits (49), Expect = 3.2
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 17 DFSVDHVDLEWFETRKKIARFKTRQGKD----IAIRLKDAPKLGLSQGDILFKEEKEIIA 72
DFS D +DL + + K + FK R I I KDA I + +EK +
Sbjct: 188 DFSKDCLDLAQYYAQLKASDFKDRINYSHIPFITIDPKDAKDF---DDAIFYDKEKNTLF 244
Query: 73 VNILDSEVIHIQAKSVAEVAKI 94
V + D + S+ + A+I
Sbjct: 245 VAVADVSEFVPKHSSLDKEARI 266
>ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99]
Length = 293
Score = 23.1 bits (48), Expect = 4.2
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 113 EFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSE--PNFKVSLASDF 165
++K P L ++KL ++N L S L +M + E P K L+ F
Sbjct: 219 QYKRMQTYPVLFAIQKLALENNALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKF 273
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 22.7 bits (47), Expect = 5.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 96 YEIGNRHAALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSK 139
YE RH A G+S+ +F TP E +L L LG+ K
Sbjct: 142 YEYLMRHFASESGKSKGQFYTPSE-VSLLLSLLLGIDENTRQDK 184
>ref|NP_223983.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [Helicobacter pylori
J99]
Length = 330
Score = 22.7 bits (47), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 6 LVGNLRDLNPLDFSVDHVDL 25
LV + RD+N LDFSV + ++
Sbjct: 73 LVLSERDINKLDFSVANAEI 92
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 22.3 bits (46), Expect = 7.2
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 39 TRQGKDIAIRLKDAPKLGLSQGDILFKEEKEII 71
+++G +++ D ++G S+ DIL K EK++I
Sbjct: 146 SKKGVSLSVSSLDL-EIGFSKEDILKKIEKQVI 177
>ref|NP_223496.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 333
Score = 22.3 bits (46), Expect = 7.2
Identities = 7/19 (36%), Positives = 16/19 (83%)
Query: 7 VGNLRDLNPLDFSVDHVDL 25
+G++RDL L+++++ VD+
Sbjct: 65 IGDVRDLERLNYALEGVDI 83
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.9 bits (45), Expect = 9.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 32 KKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEE 67
K+ F T Q A+R+K+A + GL+ D++ +E
Sbjct: 298 KRFIIFSTYQS---ALRIKEAQEAGLNGIDLIICDE 330
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 21.9 bits (45), Expect = 9.4
Identities = 8/30 (26%), Positives = 18/30 (59%)
Query: 141 DSKERLTVSMPHSEPNFKVSLASDFKVVVK 170
+SKER + ++ N ++L + KV+++
Sbjct: 628 ESKERFIELLKQAKDNLSINLNEEGKVIIQ 657
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,365
Number of Sequences: 1491
Number of extensions: 7254
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 170
length of database: 494,079
effective HSP length: 72
effective length of query: 98
effective length of database: 386,727
effective search space: 37899246
effective search space used: 37899246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)