BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645311|ref|NP_207482.1| hypothetical protein
[Helicobacter pylori 26695]
(166 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223346.1| putative [Helicobacter pylori J99] 337 1e-94
ref|NP_224003.1| putative [Helicobacter pylori J99] 27 0.22
ref|NP_223482.1| THIOREDOXIN REDUCTASE [Helicobacter pylori... 25 0.83
ref|NP_222973.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 24 1.8
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 24 2.4
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 24 2.4
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 3.1
ref|NP_223560.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 23 3.1
ref|NP_223915.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 23 4.1
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 23 5.4
ref|NP_224098.1| putative [Helicobacter pylori J99] 22 7.0
ref|NP_223923.1| putative [Helicobacter pylori J99] 22 7.0
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 22 7.0
ref|NP_223120.1| putative [Helicobacter pylori J99] 22 7.0
ref|NP_222979.1| putative [Helicobacter pylori J99] 22 9.2
>ref|NP_223346.1| putative [Helicobacter pylori J99]
Length = 276
Score = 337 bits (863), Expect = 1e-94
Identities = 161/166 (96%), Positives = 165/166 (98%)
Query: 1 MLCVFDIETIPNISLCKEHFQLEENDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 60
MLCVFDIETIPNISLCKEHFQL+E+DALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV
Sbjct: 7 MLCVFDIETIPNISLCKEHFQLKEDDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 66
Query: 61 IGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL 120
IGDDYGQFIKVGNFGQKHENKEDF SEKELLEDFFKYFNEKQPRLISFNGRGFD+PLLTL
Sbjct: 67 IGDDYGQFIKVGNFGQKHENKEDFASEKELLEDFFKYFNEKQPRLISFNGRGFDIPLLTL 126
Query: 121 KALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSHYGSVRG 166
KALKYNLTLDAFY+QENKWENYRARYSEQFHLDLMDSLSHYGSVRG
Sbjct: 127 KALKYNLTLDAFYSQENKWENYRARYSEQFHLDLMDSLSHYGSVRG 172
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 27.3 bits (59), Expect = 0.22
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 12/150 (8%)
Query: 17 KEHFQLEENDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAVIGDDYGQFIKVGNFGQ 76
KEH+ A K C+W K KS S+F L E++ I + ++Y F +
Sbjct: 809 KEHYYTPLIKA-KNCDWLKHVVKVKSESDF----LEELLKITETLQENY-DFWAFSKIDE 862
Query: 77 KHEN----KEDFTSEKELLEDFFKYFNEKQPRLISF-NGRGFDMPLLTLKALKYNLTLDA 131
+N D +E+ DF + + ++I F + +G KA Y L D
Sbjct: 863 HLDNLFIPYIDNATERRFFPDFIFWLQKGGTQIICFIDPKGSKHTDYEHKADAYQLFEDK 922
Query: 132 FYNQENKWENYRARYSEQFHLDLMDSLSHY 161
+N ++ N + + +F+ D D Y
Sbjct: 923 VFNPKDD-PNLKIKVVLKFYGDKDDVGERY 951
>ref|NP_223482.1| THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 311
Score = 25.4 bits (54), Expect = 0.83
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 8 ETIPNISLCKEHFQLEENDALKICEWSFEKQKEKSGSEFLPLYLHEII 55
E I ++CK+ + + D + + E K S EFL Y+ E I
Sbjct: 158 EAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNSKIEFLTPYVVEEI 205
>ref|NP_222973.1| putative [Helicobacter pylori J99]
Length = 409
Score = 25.0 bits (53), Expect = 1.1
Identities = 14/52 (26%), Positives = 25/52 (47%)
Query: 89 ELLEDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWE 140
E+LED+ F+EK + ++ P L + + ++ L AF N +E
Sbjct: 18 EVLEDYGVVFDEKIVEIGDYHNLTLKYPHLKAQFFENSVLLPAFINAHTHFE 69
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 24.3 bits (51), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (53%), Gaps = 5/37 (13%)
Query: 119 TLKALKYNLTLD-----AFYNQENKWENYRARYSEQF 150
TL +K NL ++ F + EN WE + + +E+F
Sbjct: 175 TLNKIKTNLVVNYRNENKFKDHENHWEAFTPQTAEEF 211
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 23.9 bits (50), Expect = 2.4
Identities = 14/52 (26%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 46 FLPLYLHEIISIAAVIGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKY 97
+ P Y H ++ +A + DD I + F K E+ F +++E F Y
Sbjct: 554 YKPFYKHSVLKLAGYLHDD---VIALPGFNPKKESVASFV--WKIMEQFKLY 600
Score = 22.3 bits (46), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 81 KEDFTSEKELLEDFFKYFNEK---QPRLISFNGRGFDMPLLTLKALKYNLTLDAFY 133
KE+ SEKE ++ K EK P L+ N + L + T+DAF+
Sbjct: 65 KENLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQRFLNAEV--RISTIDAFF 118
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 23.9 bits (50), Expect = 2.4
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 71 VGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLD 130
+ NF QK++N FT K K + ++I N R + L +K+ K+N
Sbjct: 254 ISNFTQKYKNARVFTLTKNYRSS--KEILDLANQVIQHNQRIYPKNLEVVKSGKFNKPTL 311
Query: 131 AFYN 134
YN
Sbjct: 312 LNYN 315
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.5 bits (49), Expect = 3.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 76 QKHENKEDFTSEKELLEDFFKYFN 99
+KHEN + + LLE FFK+ +
Sbjct: 388 KKHENYQKDKASLPLLEYFFKFLH 411
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 23.5 bits (49), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 73 NFGQKHENKEDFTSEKELLEDFFKYFNEK 101
N G K+E K+ + K +DF K N+K
Sbjct: 16 NSGAKNEVKDAKNAPKSASKDFSKILNQK 44
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 23.5 bits (49), Expect = 3.1
Identities = 20/77 (25%), Positives = 37/77 (47%), Gaps = 6/77 (7%)
Query: 70 KVGNFGQKHENKE---DFTSEKELLEDFFKYFNEKQPRLISFNGRGF-DMPLLTLKALKY 125
++ N ++ EN+ DF+S KELLE K+ + ++ + P T+ + Y
Sbjct: 156 ELDNLSEEGENESVAYDFSSAKELLELCQKH-QKSIAEIVRLRENALKNHPDATMTKI-Y 213
Query: 126 NLTLDAFYNQENKWENY 142
+ L+ ++N N E Y
Sbjct: 214 HAMLECYHNGANSKERY 230
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 23.1 bits (48), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 77 KHENKEDFTSEKELLEDFFKYFNE 100
K + +E F EKEL+E+ F+ E
Sbjct: 68 KAQQQESFEREKELMEEEFQVQRE 91
Score = 22.7 bits (47), Expect = 5.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 76 QKHENKEDFTSEKELLEDFFKYFNEKQPRLISFN 109
+K +E+F ++ELLE ++ Y +K I ++
Sbjct: 78 EKELMEEEFQVQRELLEIYYGYPTQKNKPGIKYD 111
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 23.1 bits (48), Expect = 4.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 132 FYNQENKWENYRARYSEQFH 151
FY E W+++ YS+++H
Sbjct: 289 FYADEKPWKHFGYPYSKEWH 308
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 22.7 bits (47), Expect = 5.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 81 KEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDM 115
K F E E L+ + ++ L+SFN +GF+M
Sbjct: 399 KAHFKKELEKLKPY------EEAGLLSFNSKGFEM 427
>ref|NP_224098.1| putative [Helicobacter pylori J99]
Length = 365
Score = 22.3 bits (46), Expect = 7.0
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 121 KALKYNLTLDAFYNQENKWENY 142
+A+ L L A YN+EN + Y
Sbjct: 159 QAMPIVLQLHALYNEENNYTQY 180
>ref|NP_223923.1| putative [Helicobacter pylori J99]
Length = 245
Score = 22.3 bits (46), Expect = 7.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 93 DFFKYFNEKQPRLISFNGRGFDMPLLTLKALK 124
DF +Y N K ++ + R TLK LK
Sbjct: 117 DFLEYANSKGVKIFYISNRTQKNKAFTLKTLK 148
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 22.3 bits (46), Expect = 7.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 90 LLEDFFKYFNEKQPRLISFN 109
+LE F K F + P+++SF+
Sbjct: 727 ILEKFVKEFLKNHPKVVSFS 746
>ref|NP_223120.1| putative [Helicobacter pylori J99]
Length = 416
Score = 22.3 bits (46), Expect = 7.0
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 68 FIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEK 101
+I +GNF N + + S ++ + + +Y N++
Sbjct: 92 YISLGNFFGNPNNVKPYLSAGDVSDAYLQYANQR 125
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 21.9 bits (45), Expect = 9.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 83 DFTSEKELLEDFFKYFNEKQPRLI 106
++ ++KE E K FN+++ R I
Sbjct: 76 NYRNQKETSESLLKIFNDEESRRI 99
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,957
Number of Sequences: 1491
Number of extensions: 10009
Number of successful extensions: 35
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 20
length of query: 166
length of database: 494,079
effective HSP length: 71
effective length of query: 95
effective length of database: 388,218
effective search space: 36880710
effective search space used: 36880710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)