BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645312|ref|NP_207483.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223346.1| putative [Helicobacter pylori J99] 192 1e-51
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 25 0.27
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 24 0.46
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 23 0.79
ref|NP_222977.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobact... 23 1.4
ref|NP_223025.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99] 22 2.3
ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori... 22 2.3
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 22 3.0
ref|NP_222951.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223651.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223243.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_224114.1| putative component of cation transport for... 21 5.1
ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE... 21 5.1
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 21 5.1
ref|NP_223248.1| putative [Helicobacter pylori J99] 21 5.1
ref|NP_222923.1| putative [Helicobacter pylori J99] 21 5.1
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 20 6.7
ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 20 6.7
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 20 6.7
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 20 6.7
ref|NP_222738.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223990.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223360.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 20 8.8
ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pyl... 20 8.8
>ref|NP_223346.1| putative [Helicobacter pylori J99]
Length = 276
Score = 192 bits (487), Expect = 1e-51
Identities = 92/96 (95%), Positives = 93/96 (96%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
M NIPGKFDVSGDLVHAIYYNPHLSQKEKKG+ID YCQSDVLNTYWLFLKYEVLKGALNK
Sbjct: 181 MTNIPGKFDVSGDLVHAIYYNPHLSQKEKKGIIDGYCQSDVLNTYWLFLKYEVLKGALNK 240
Query: 61 EQYLGLLNDFLAKFPKEKSYSSVFTNALEKEIREFA 96
EQYLGLLNDFLAKFPKEKSYSSVF NALEKEIREFA
Sbjct: 241 EQYLGLLNDFLAKFPKEKSYSSVFINALEKEIREFA 276
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 25.0 bits (53), Expect = 0.27
Identities = 14/39 (35%), Positives = 20/39 (50%)
Query: 53 VLKGALNKEQYLGLLNDFLAKFPKEKSYSSVFTNALEKE 91
VL G L Q L LN+ L P+ K+Y + A +K+
Sbjct: 210 VLGGDLKVNQTLNRLNNALNFLPQGKAYEEPYFEASDKK 248
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 24.3 bits (51), Expect = 0.46
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 43 NTYWLFLKYEVLKGALNKEQYLGLLNDFLAKFPKEKSYSSVFTNALEKEI 92
NT FL E GA+N +L++FL P S+++TN E+ I
Sbjct: 68 NTLERFLSDE--NGAINDTLKRRMLSEFLLANPHVLLVSAIYTNNNERMI 115
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 23.5 bits (49), Expect = 0.79
Identities = 21/64 (32%), Positives = 29/64 (44%), Gaps = 8/64 (12%)
Query: 23 HLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNKEQYLGLLNDFLAKFPKEKSYSS 82
HL+ + KK + DS W V+K AL + + LL +F A PKEKS
Sbjct: 124 HLNTETKKKLNDSEASE---KRNW----ESVVKLALEQNKD-NLLLEFSATIPKEKSVED 175
Query: 83 VFTN 86
+ N
Sbjct: 176 KYEN 179
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 23.1 bits (48), Expect = 1.0
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQ 38
M NIP DV + + +Y++ + EK V+DS CQ
Sbjct: 250 MTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDS-CQ 286
>ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobacter pylori J99]
Length = 339
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/29 (44%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
Query: 57 ALNKEQYLGLLNDFLAKFPKE--KSYSSV 83
AL KE YL D+L K KE K Y+ +
Sbjct: 206 ALEKEAYLEFSWDYLKKISKELKKRYAHI 234
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Query: 59 NKEQYLGLLNDFLAKFPKEKSYSSV---FTNALEKEIRE 94
N+EQ L LN+ + PKE++ V +++E++E
Sbjct: 157 NEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKE 195
>ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99]
Length = 316
Score = 21.9 bits (45), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 65 GLLNDFLAKFPKEKSYSSVFTNALEKEI 92
G + LAK ++++ SVF + +KEI
Sbjct: 160 GEIAQILAKEARKRAVISVFVSRFDKEI 187
>ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori J99]
Length = 193
Score = 21.9 bits (45), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 67 LNDFLAKFPKEKSYSSVFTNALEKEI 92
L DFL ++ S V NALEK +
Sbjct: 101 LKDFLGRYYVLNSIEDVDFNALEKRL 126
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 75 PKEKSYSSVFTNALEKEIREFA 96
P E + + FTN KE++E A
Sbjct: 54 PSENTLTLTFTNKASKEMQERA 75
>ref|NP_222951.1| putative [Helicobacter pylori J99]
Length = 105
Score = 21.6 bits (44), Expect = 3.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 68 NDFLAKFPKEKSYSSVFTNALEKEI 92
N K P ++ Y+S++ + L KE+
Sbjct: 59 NPLYPKAPGDEIYASMYKDTLSKEL 83
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 21.2 bits (43), Expect = 3.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 76 KEKSYSSVFTNALEKEIREF 95
K+KS++ F+ + KE+ EF
Sbjct: 51 KKKSFNIAFSPCVIKELNEF 70
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 21.2 bits (43), Expect = 3.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 16 HAIYYNPHLSQKEK 29
HAIY+N HL + K
Sbjct: 411 HAIYFNNHLLEFAK 424
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 20.8 bits (42), Expect = 5.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 20 YNPHLSQKEKKGVIDSY 36
Y+ HL+ ++K +I SY
Sbjct: 661 YHAHLTPEDKAQIISSY 677
>ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE [Helicobacter pylori
J99]
Length = 257
Score = 20.8 bits (42), Expect = 5.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 49 LKYEVLKGALNKEQYLGLLNDFLAKF 74
+ +E L A+N YL + + +KF
Sbjct: 95 VNFEALSNAINSLHYLKCMPNIASKF 120
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 20.8 bits (42), Expect = 5.1
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 22 PHLSQKEKKGVIDSY 36
PHL QK+ K + D++
Sbjct: 55 PHLVQKQIKSLFDAF 69
>ref|NP_223248.1| putative [Helicobacter pylori J99]
Length = 293
Score = 20.8 bits (42), Expect = 5.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 51 YEVLKGALNKEQYLGLLND 69
++++ NKE+YL LL+D
Sbjct: 236 HKIISIETNKERYLVLLSD 254
>ref|NP_222923.1| putative [Helicobacter pylori J99]
Length = 368
Score = 20.8 bits (42), Expect = 5.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 40 DVLNTYWLF 48
++L TYWLF
Sbjct: 203 EILETYWLF 211
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 20.4 bits (41), Expect = 6.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 52 EVLKGALNKEQYLGLLNDFLAKFPKEKSYSSVFTNALEKEI 92
E +K A K + L N + + SS NA+E+E+
Sbjct: 99 EEIKNASIKRKLFTLANTIREQALESAQKSSDILNAVEREV 139
>ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 357
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 53 VLKGALNKEQYLGLLNDFL 71
++KG NKE+Y + +FL
Sbjct: 219 LIKGKNNKERYAYIEKEFL 237
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 20.4 bits (41), Expect = 6.7
Identities = 10/31 (32%), Positives = 14/31 (44%)
Query: 66 LLNDFLAKFPKEKSYSSVFTNALEKEIREFA 96
+LN + K K Y V N + E +FA
Sbjct: 7 VLNHTINLLLKGKDYREVVLNTINTEFLDFA 37
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 20.4 bits (41), Expect = 6.7
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 61 EQYLGLLNDFLAKFPKEKSYSSVFTNALEKEI 92
E+ + FL K K K++ S+F+ KE+
Sbjct: 110 ERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEM 141
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 20.4 bits (41), Expect = 6.7
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 39 SDVLN-TYWLFLKYEVLKGALN 59
S++LN TY KYE +G LN
Sbjct: 186 SEILNNTYSNLDKYEAYQGLLN 207
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 67 LNDFLAKFPKEKSYSSVFTNALE 89
L D L + K+ SS+F N E
Sbjct: 175 LKDALIAYQKDDQVSSIFKNFKE 197
>ref|NP_223360.1| putative [Helicobacter pylori J99]
Length = 157
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 26 QKEKKGVIDSYCQSDVLNTYW 46
+KEK+ VID +S V T++
Sbjct: 97 KKEKERVIDCLLKSQVAITHY 117
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 20.0 bits (40), Expect = 8.8
Identities = 7/32 (21%), Positives = 17/32 (52%)
Query: 22 PHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEV 53
P++ + ++ G + D ++ W+ L Y+V
Sbjct: 251 PYMKEPKQDGARTAVVHKDGVHLEWVALGYKV 282
>ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 20.0 bits (40), Expect = 8.8
Identities = 7/12 (58%), Positives = 9/12 (74%)
Query: 20 YNPHLSQKEKKG 31
YNP + QK K+G
Sbjct: 3 YNPKILQKPKEG 14
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,289
Number of Sequences: 1491
Number of extensions: 5256
Number of successful extensions: 27
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 96
length of database: 494,079
effective HSP length: 72
effective length of query: 24
effective length of database: 386,727
effective search space: 9281448
effective search space used: 9281448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)