BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645320|ref|NP_207491.1| hypothetical protein
[Helicobacter pylori 26695]
         (168 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223349.1|  putative [Helicobacter pylori J99]              352  2e-99
ref|NP_223571.1|  CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [...    23  3.2
ref|NP_222924.1|  putative [Helicobacter pylori J99]               23  4.2

>ref|NP_223349.1| putative [Helicobacter pylori J99]
          Length = 166

 Score =  352 bits (904), Expect = 2e-99
 Identities = 162/165 (98%), Positives = 163/165 (98%)

Query: 3   MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL 62
           MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL
Sbjct: 1   MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL 60

Query: 63  FVVQDAQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQVYR 122
           FVVQD QKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDT+WQVYR
Sbjct: 61  FVVQDPQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTNWQVYR 120

Query: 123 EYICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLGIQPPER 167
           EYICPDCGILLDVEAPTPWYPVIHDFEPDIE FYKDWLGIQPPER
Sbjct: 121 EYICPDCGILLDVEAPTPWYPVIHDFEPDIETFYKDWLGIQPPER 165



>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
          Length = 1085

 Score = 23.5 bits (49), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 23  TVLKMLSMPKDHERFQMYLKVLQDK 47
           T  K++ + +D E+F ++LK L  K
Sbjct: 663 TPFKVIDIAEDREKFSLFLKELDIK 687



>ref|NP_222924.1| putative [Helicobacter pylori J99]
          Length = 385

 Score = 23.1 bits (48), Expect = 4.2
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)

Query: 69  QKKWVIKCSCGHAFCAPEENWKLHANIYV 97
           + +WV+K  C H + A     KL+ + Y+
Sbjct: 228 KNEWVVKIDCDHIYDAK----KLYKSFYI 252



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.322    0.140    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,248
Number of Sequences: 1491
Number of extensions: 6880
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 168
length of database: 494,079
effective HSP length: 71
effective length of query: 97
effective length of database: 388,218
effective search space: 37657146
effective search space used: 37657146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)