BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644701|ref|NP_206871.1| urease accessory protein
(ureI) [Helicobacter pylori 26695]
         (195 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222788.1|  urea transporter [Helicobacter pylori J99]      407  e-115
ref|NP_223918.1|  INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli...    27  0.47
ref|NP_222889.1|  APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba...    25  1.4
ref|NP_222932.1|  putative [Helicobacter pylori J99]               24  3.1
ref|NP_222971.1|  putative CYTOCHROME C-TYPE BIOGENESIS PROT...    23  5.2
ref|NP_224113.1|  putative [Helicobacter pylori J99]               23  6.8
ref|NP_223513.1|  putative [Helicobacter pylori J99]               23  6.8

>ref|NP_222788.1| urea transporter [Helicobacter pylori J99]
          Length = 195

 Score =  407 bits (1046), Expect = e-115
 Identities = 191/195 (97%), Positives = 194/195 (98%)

Query: 1   MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIICNIVVITYSALHPTAPVE 60
           MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSI+CN+VVITYSALHPTAPVE
Sbjct: 1   MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIVCNVVVITYSALHPTAPVE 60

Query: 61  GAEDIAQVSHHLTSFYGPATGLLFGFTYLYAAINHTFGLDWRPYSWYSLFVAINTIPAAI 120
           GAEDI QVSHHLTSFYGPATGLLFGFTYLYAAINHTFGLDWRPYSWYSLFVAINT+PAAI
Sbjct: 61  GAEDIVQVSHHLTSFYGPATGLLFGFTYLYAAINHTFGLDWRPYSWYSLFVAINTVPAAI 120

Query: 121 LSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGIL 180
           LSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGIL
Sbjct: 121 LSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGIL 180

Query: 181 TAWIPAWLLFIQHWV 195
           TAWIPAWLLFIQHWV
Sbjct: 181 TAWIPAWLLFIQHWV 195



>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
          Length = 452

 Score = 26.6 bits (57), Expect = 0.47
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 9   VGIVLISNGICGLTKV-DPKSTAVMNFFVGGL 39
           + ++L  N +CGLT++ D K+    +F  GGL
Sbjct: 247 IKLILGENKVCGLTRIKDAKAVYKNHFIYGGL 278



>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
          Length = 425

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 23  KVDPKSTAVMNFFVGGLSIICNIVVITYSA---LHPTAPVEGAEDIAQVSHHLTSFYGPA 79
           K    S   + FFVG L      +   YS    L P   V  A     + + L  F  P 
Sbjct: 55  KTPRNSAFALGFFVGALLFYWCALSFRYSDFTYLLPLIIVLVALVYGVLFYLLLYFENPY 114

Query: 80  TGLLFGFTYLYAAINHTFGLDWR-PYSWYSLFV 111
             LL   ++L ++  H FG DW  P S++S  V
Sbjct: 115 FRLL---SFLGSSFIHPFGFDWLVPDSFFSYSV 144



>ref|NP_222932.1| putative [Helicobacter pylori J99]
          Length = 277

 Score = 23.9 bits (50), Expect = 3.1
 Identities = 10/18 (55%), Positives = 11/18 (60%)

Query: 150 GVLWLTAFIENILKIPLG 167
           GVL L  F+  I  IPLG
Sbjct: 157 GVLMLAGFVTGIFSIPLG 174



>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
           J99]
          Length = 239

 Score = 23.1 bits (48), Expect = 5.2
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 3   GLVLLYVGIVLISNGICGLT 22
           GLVL+ +GI++++N +  LT
Sbjct: 215 GLVLILMGILIMTNSLESLT 234



>ref|NP_224113.1| putative [Helicobacter pylori J99]
          Length = 145

 Score = 22.7 bits (47), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 163 KIPLGKFTPWLAIIEGILTAWIPAWLLFI 191
           K P+GK+T  +A+  G L A +   + F+
Sbjct: 117 KNPIGKYTHHIALAFGFLIAILAKTMWFV 145



>ref|NP_223513.1| putative [Helicobacter pylori J99]
          Length = 245

 Score = 22.7 bits (47), Expect = 6.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 1   MLGLVLLYVGIVLISN 16
           + GL +LY+GI+LIS+
Sbjct: 206 VFGLYVLYMGIMLISH 221



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.328    0.144    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,530
Number of Sequences: 1491
Number of extensions: 7726
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 7
length of query: 195
length of database: 494,079
effective HSP length: 73
effective length of query: 122
effective length of database: 385,236
effective search space: 46998792
effective search space used: 46998792
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)