BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645321|ref|NP_207492.1| hypothetical protein
[Helicobacter pylori 26695]
         (29 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223290.1|  putative [Helicobacter pylori J99]               35  4e-04
ref|NP_223986.1|  putative [Helicobacter pylori J99]               20  8.4

>ref|NP_223290.1| putative [Helicobacter pylori J99]
          Length = 683

 Score = 34.7 bits (78), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 16/21 (76%)

Query: 1  MKVTQGIANDFFALTNTIFSI 21
          MK TQ   NDFFALT TIFSI
Sbjct: 1  MKATQSTINDFFALTGTIFSI 21



>ref|NP_223986.1| putative [Helicobacter pylori J99]
          Length = 387

 Score = 20.4 bits (41), Expect = 8.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 2   KVTQGIANDFFALTNTIFSIL 22
           K  Q ++ D+F+L+N  F  L
Sbjct: 238 KTLQNLSFDYFSLSNRQFKTL 258



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.336    0.145    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,966
Number of Sequences: 1491
Number of extensions: 322
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 29
length of database: 494,079
effective HSP length: 5
effective length of query: 24
effective length of database: 486,624
effective search space: 11678976
effective search space used: 11678976
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 41 (20.4 bits)