BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645323|ref|NP_207494.1| diacylglycerol kinase
(dgkA) [Helicobacter pylori 26695]
(128 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223358.1| DIACYLGLYCEROL KINASE [Helicobacter pylori... 243 2e-66
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 28 0.082
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 26 0.31
ref|NP_223281.1| putative lipopolysaccharide biosynthesis p... 24 1.5
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 23 2.6
ref|NP_222776.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223875.1| putative [Helicobacter pylori J99] 22 4.5
ref|NP_223069.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 22 7.6
ref|NP_222742.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_224070.1| putative [Helicobacter pylori J99] 21 10.0
ref|NP_223878.1| putative [Helicobacter pylori J99] 21 10.0
ref|NP_223218.1| putative [Helicobacter pylori J99] 21 10.0
>ref|NP_223358.1| DIACYLGLYCEROL KINASE [Helicobacter pylori J99]
Length = 128
Score = 243 bits (619), Expect = 2e-66
Identities = 118/126 (93%), Positives = 121/126 (95%)
Query: 1 MSDFEVPPKAKGFKRLFKALFYSKDGLKCAWIEESAFRQIVILALFCIVLASYLAKDFLE 60
MSDF+VPPKAKGFKRLFKALFYSKDGLKCAW EESAFRQIVILALFCIVLASYL KDFLE
Sbjct: 1 MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLE 60
Query: 61 WGLLILPCFLSVVVELINSSIEKAVDFTGTEFHPLAKKAKDMASAAQLIGLIFWTLIWGR 120
WGLLILPCFLSVV+ELINSSIEKAVDFTGTEFHPLAKKAKDMAS+AQLIGLIFW IWGR
Sbjct: 61 WGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGR 120
Query: 121 YLLALY 126
YLL LY
Sbjct: 121 YLLTLY 126
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 28.1 bits (61), Expect = 0.082
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 74 VELINSSIEKAVDFTGTEFHPLAKKAKDMASAAQLIGLI-FWTLIWGRYL 122
+EL+NSS+ FT ++ + A A + ++ FW+L G YL
Sbjct: 76 IELVNSSLNYLKSFTNNNYNSTTQSPIFNAVQAVITSVLGFWSLYAGNYL 125
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 26.2 bits (56), Expect = 0.31
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 16 LFKALFYSKDGLKCAWIEESAFRQIVILALFCIVLASYLAKDFLEWGLLILPCFLSVVVE 75
+FK SKD ++ I ILA+ + L ++ DFL L + LSV++
Sbjct: 16 VFKRFLQSKDLALVVFV-------IAILAIIIVPLPPFVL-DFL----LTISIALSVLII 63
Query: 76 LINSSIEKAVDFT 88
LI I+K DF+
Sbjct: 64 LIGLYIDKPTDFS 76
>ref|NP_223281.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 444
Score = 23.9 bits (50), Expect = 1.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 6 VPPKAKGFKRLFKALFYSKDGLKCAWIEESAFRQIVILALFCIVLASY 53
+ PK + F++L + L+ S LK W Q ++ F L+ Y
Sbjct: 54 ISPKHQDFEKLLQELYDSSSLLKSDWFHSDYCYQELLPQEFGCYLSHY 101
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 23.1 bits (48), Expect = 2.6
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Query: 34 ESAFRQIVILAL--FCIVLASYLAKDFLEWGLLILPCFLSVVVELINSSIEKAVDF 87
E+A ++ + LA F + + K E+G + P L V + S+EKA++F
Sbjct: 121 ENAIKKAINLAQKGFLVTFGISIEKPNTEFGYIESPNGLDVKRFIEKPSLEKAIEF 176
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 22.7 bits (47), Expect = 3.4
Identities = 7/18 (38%), Positives = 15/18 (82%)
Query: 11 KGFKRLFKALFYSKDGLK 28
KGF++ FKA+ + ++G++
Sbjct: 330 KGFEKDFKAMLFDRNGVE 347
>ref|NP_223875.1| putative [Helicobacter pylori J99]
Length = 183
Score = 22.3 bits (46), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 54 LAKDFLEWGLLILPCFLSVVVELINSSIEKAV 85
+A DF+ LL L ++ ELI +EK+V
Sbjct: 15 IANDFIHSKLLELKAPRELLCELIEGILEKSV 46
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 21.9 bits (45), Expect = 5.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 114 WTLIWGRYLLA 124
W L+WG Y LA
Sbjct: 5 WLLVWGLYSLA 15
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 21.6 bits (44), Expect = 7.6
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 92 FHPLAKKAKDMASAAQLIGLIFWTLIWGRYLLALYL 127
+ PL K+ +A IG++ W + G LL +L
Sbjct: 171 YTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFL 206
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 21.6 bits (44), Expect = 7.6
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 36 AFRQIVILALFCIVLASYLAKD-----FLEWGLLILPCFLSVVVELINS 79
+F ++I+ LFC+ A +LA + W ++ SV I++
Sbjct: 46 SFIAMIIIVLFCVNGALFLALGLISAYLMRWSAIVFSWLNSVAFYFISA 94
>ref|NP_224070.1| putative [Helicobacter pylori J99]
Length = 262
Score = 21.2 bits (43), Expect = 10.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 57 DFLEWGLLILPCFLSVVVELINSSIEK 83
DF G+L+L +VV L+++++EK
Sbjct: 108 DFASEGVLLLSDSKAVVSALMHANLEK 134
>ref|NP_223878.1| putative [Helicobacter pylori J99]
Length = 136
Score = 21.2 bits (43), Expect = 10.0
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 7/48 (14%)
Query: 7 PPKAKGFKRLFKALFYSKDGLKCAWIEESAFRQIVILALFCIVLASYL 54
P KG + F+ KD K A ++ + + L+LFCIV+A+ +
Sbjct: 52 PLAEKGLQEAFR-----KD--KLAEGQKFSISSLRFLSLFCIVVAAVI 92
>ref|NP_223218.1| putative [Helicobacter pylori J99]
Length = 227
Score = 21.2 bits (43), Expect = 10.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 62 GLLILPCFLSVVVELINSSIEKAVDFTGTEFHPLAKK 98
G L L + + N S++K F G+E L+KK
Sbjct: 157 GFLCLGASMQGSSQAENLSLKKCALFLGSEHEGLSKK 193
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.329 0.143 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,679
Number of Sequences: 1491
Number of extensions: 4689
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 13
length of query: 128
length of database: 494,079
effective HSP length: 68
effective length of query: 60
effective length of database: 392,691
effective search space: 23561460
effective search space used: 23561460
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 43 (21.2 bits)