BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645325|ref|NP_207496.1| hypothetical protein
[Helicobacter pylori 26695]
(158 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223360.1| putative [Helicobacter pylori J99] 285 5e-79
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 28 0.15
ref|NP_223040.1| putative [Helicobacter pylori J99] 27 0.20
ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99] 23 3.8
ref|NP_222990.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 22 6.4
ref|NP_223049.1| putative [Helicobacter pylori J99] 22 6.4
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 8.4
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 22 8.4
>ref|NP_223360.1| putative [Helicobacter pylori J99]
Length = 157
Score = 285 bits (728), Expect = 5e-79
Identities = 146/157 (92%), Positives = 150/157 (94%)
Query: 2 MRFFSFFYFLFYFLGVSLQALSPLEDQEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKTA 61
MRFFSF YFLFYFLGVSL ALSPLE+QEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKTA
Sbjct: 1 MRFFSFCYFLFYFLGVSLHALSPLEEQEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKTA 60
Query: 62 PYVLDYHCSIITRNLPNLKNPLLPIKLERFLLEIALKKEKERVIDCILKSQVAITHYDHS 121
PYVLDYHCSIITRNLP+LKNPLL IKLERFLLEIALKKEKERVIDC+LKSQVAITHYDHS
Sbjct: 61 PYVLDYHCSIITRNLPDLKNPLLQIKLERFLLEIALKKEKERVIDCLLKSQVAITHYDHS 120
Query: 122 YKNGTTTTSILALKALSVRASLVGDALFLDIFRKEEE 158
YKNGTTTTSIL LKALSV+ASL GD L LDIFRKEEE
Sbjct: 121 YKNGTTTTSILNLKALSVKASLEGDMLSLDIFRKEEE 157
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 27.7 bits (60), Expect = 0.15
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 42 RVMGEEYSVSKPIVSRIKTAPYVLDYHCSIITRNLPNLKNPL-LPIKLERFLLEIALKKE 100
+V+GE V +P V IKT+ V+ SI T N P ++ + +KL + L IA+
Sbjct: 347 KVLGE---VKRPSVEEIKTSHLVITIGSSIKTEN-PLVRYAINNALKLNKASL-IAMHPI 401
Query: 101 KERVIDCILKSQVAITH 117
K+ + + +S ITH
Sbjct: 402 KDNALANLCRSSFCITH 418
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 27.3 bits (59), Expect = 0.20
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 14 FLGVSLQALSPLEDQEFLISYRLKIVDSRVMGE 46
FL +SL ++PL + I L VD R++GE
Sbjct: 204 FLDISLLKITPLTGRTHQIRLHLSSVDHRIVGE 236
>ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99]
Length = 604
Score = 23.1 bits (48), Expect = 3.8
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 5/63 (7%)
Query: 31 LISYRLKIVDSRVMGE-----EYSVSKPIVSRIKTAPYVLDYHCSIITRNLPNLKNPLLP 85
++S LK V +G+ E SKPI + P+V I T +L+ LL
Sbjct: 265 IVSLGLKSVTDIAVGDTLTDAENPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLK 324
Query: 86 IKL 88
++L
Sbjct: 325 LQL 327
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 22.7 bits (47), Expect = 4.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 75 NLPNLKNPLLPIKLERFLLEIALKKE 100
N+PN+ NP+ I F+ + LK E
Sbjct: 118 NIPNIANPIAIIDGISFIKSMRLKHE 143
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 22.3 bits (46), Expect = 6.4
Identities = 20/87 (22%), Positives = 35/87 (39%), Gaps = 1/87 (1%)
Query: 49 SVSKPIVSRIKTAPYVLDYHCSIITRNLPNLKNPLLPIKLERFLLEIALKKEKERVIDCI 108
++ K +K Y D H L NLK L +KL + + +KE V+ +
Sbjct: 80 TLKKLAFKSVKVGVYTCDTHAKD-NALLENLKALFLGLKLGLYEYDTFKPNKKESVLKEV 138
Query: 109 LKSQVAITHYDHSYKNGTTTTSILALK 135
+ + H + + N ++ ALK
Sbjct: 139 IVALELHKHCEKTCANSLEKSAKEALK 165
>ref|NP_223049.1| putative [Helicobacter pylori J99]
Length = 252
Score = 22.3 bits (46), Expect = 6.4
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 63 YVLDYHCSIITRNLPNLKNPLL---------PIKLERFLLEIALKKEKERVIDCILKSQV 113
Y L+++ +I T + +LK+ L I + FL+E+ +EK+ + K
Sbjct: 138 YFLNHYKNIKTFSCGHLKDMRLFGDGYDFYIQINKQAFLVEVKGIREKQGTLRLTQKEYE 197
Query: 114 AITHYDHSY 122
Y+H Y
Sbjct: 198 QAQTYNHDY 206
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 21.9 bits (45), Expect = 8.4
Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 28/142 (19%)
Query: 26 EDQEFLISYRLKIVDSRVMGEEYSVS---KPIVSRIKTAPYVLDYHCSIITRNLPNLKNP 82
E + L ++ +++S+ E+ + K IV T L++ ++ ++ N
Sbjct: 13 ELEGILFNFDTSLLESKKYNEKVDLIFDLKSIVKDKDTKTNTLNFSVTLSSKGTQTKTNE 72
Query: 83 LLP------IKLERFLLEIALKKEKE---------RVIDCILKSQVAI----------TH 117
+L +KL+ +L+ A K K+ + LK Q+ + T
Sbjct: 73 ILKECSNQGVKLDEEILKKAFVKFKKQGSMDYFIHKNAQGFLKEQLDLYLFEYLFKEMTA 132
Query: 118 YDHSYKNGTTTTSILALKALSV 139
+DH NG T +AL+ +++
Sbjct: 133 FDHKRLNGINTIKEVALEVIAL 154
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.9 bits (45), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 89 ERFLLEIALKKEKERVIDCI 108
E+F E+ L+KE + DCI
Sbjct: 425 EKFRKELELQKELQEYKDCI 444
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.141 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,152
Number of Sequences: 1491
Number of extensions: 6877
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 11
length of query: 158
length of database: 494,079
effective HSP length: 71
effective length of query: 87
effective length of database: 388,218
effective search space: 33774966
effective search space used: 33774966
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)