BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645327|ref|NP_207498.1| hypothetical protein
[Helicobacter pylori 26695]
         (36 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223537.1|  vacuolating cytotoxin [Helicobacter pylori...    22  3.7
ref|NP_223466.1|  putative [Helicobacter pylori J99]               22  3.7

>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
          Length = 1288

 Score = 21.6 bits (44), Expect = 3.7
 Identities = 7/16 (43%), Positives = 10/16 (61%)

Query: 8    FFSNSHAIDFKGMASL 23
            FF+N H  DF+   +L
Sbjct: 1092 FFANQHEFDFEAQGAL 1107



>ref|NP_223466.1| putative [Helicobacter pylori J99]
          Length = 336

 Score = 21.6 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 6   LNFFSNSHAIDFKGMASLLTLIY 28
           L  F N  A+DFK + + L  +Y
Sbjct: 227 LRAFKNHQALDFKDILNHLASLY 249



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.331    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,776
Number of Sequences: 1491
Number of extensions: 789
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 36
length of database: 494,079
effective HSP length: 12
effective length of query: 24
effective length of database: 476,187
effective search space: 11428488
effective search space used: 11428488
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 41 (20.4 bits)