BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645331|ref|NP_207502.1| hypothetical protein
[Helicobacter pylori 26695]
(114 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223365.1| putative [Helicobacter pylori J99] 211 4e-57
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 27 0.15
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 27 0.19
ref|NP_223787.1| putative [Helicobacter pylori J99] 26 0.25
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 26 0.25
ref|NP_223610.1| putative [Helicobacter pylori J99] 25 0.56
ref|NP_223172.1| putative [Helicobacter pylori J99] 25 0.56
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 24 0.95
ref|NP_224050.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223520.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 23 2.1
ref|NP_224199.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_222814.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 22 3.6
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 22 3.6
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 22 3.6
ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99] 22 3.6
ref|NP_223586.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 22 4.7
ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter p... 22 6.2
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 6.2
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 6.2
ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXON... 22 6.2
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 22 6.2
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 21 8.0
ref|NP_224055.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 21 8.0
ref|NP_223980.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 21 8.0
ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobact... 21 8.0
ref|NP_223629.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223389.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_222962.1| putative [Helicobacter pylori J99] 21 8.0
>ref|NP_223365.1| putative [Helicobacter pylori J99]
Length = 114
Score = 211 bits (537), Expect = 4e-57
Identities = 108/114 (94%), Positives = 108/114 (94%)
Query: 1 MNIKTHSSNEKERFVRIEEDEKKGLFAGTANENSHGLSLMALIGVLVFGGAFLALLAPKI 60
MNIKTHSSNEKERFVRIEEDEKK LFA NEN HGLSLMALIGVLVFGGAFLALL PKI
Sbjct: 1 MNIKTHSSNEKERFVRIEEDEKKELFAEATNENPHGLSLMALIGVLVFGGAFLALLVPKI 60
Query: 61 YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF 114
YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF
Sbjct: 61 YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF 114
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 26.9 bits (58), Expect = 0.15
Identities = 18/52 (34%), Positives = 25/52 (47%)
Query: 59 KIYLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIG 110
K+Y + I RKI ++ K L EEQ E + E + IE EN+G
Sbjct: 554 KVYELESYEEILRKIKYEDNDKPLAYEEQYSDLVERKNESYTLNIEALENMG 605
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 26.6 bits (57), Expect = 0.19
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 25 LFAGTANENSHGLSLMALIGVLVF---------GGAFLALLAPKIYLSNNIYYISRKINT 75
L+A TAN S ++ + I V + AL ++ NN +S KI+
Sbjct: 277 LYAHTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDW 336
Query: 76 LEDQKRLLLEEQQILKNELEKERFKYYIENS 106
+ K E++ ++NE K Y +ENS
Sbjct: 337 WLENKL----ERERMQNEYAKSALNYTLENS 363
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.2 bits (56), Expect = 0.25
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 6 HSSNEKERFVRIEEDEKKGLFAGTANENSHGLS 38
H+ + E F IEE+ F N+ SHG+S
Sbjct: 688 HNDSLSECFENIEEERVCNSFISWLNDGSHGIS 720
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 26.2 bits (56), Expect = 0.25
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 69 ISRKINTLEDQKRLLLEEQQILKNELEKERF 99
IS K N L+ Q+ + ++ Q +KNELEKE +
Sbjct: 206 ISYKGNKLKAQELIDEKKAQEIKNELEKESY 236
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.0 bits (53), Expect = 0.56
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 70 SRKINTLEDQKRLLLEEQQILKNE-LEKERFKYYIEN 105
+R+I L+++ + E+Q++LK E LE E+ +EN
Sbjct: 108 NREIENLQNEIKHKSEKQEVLKKEMLELEKLALELEN 144
>ref|NP_223172.1| putative [Helicobacter pylori J99]
Length = 343
Score = 25.0 bits (53), Expect = 0.56
Identities = 17/75 (22%), Positives = 33/75 (43%), Gaps = 2/75 (2%)
Query: 9 NEKERFVRIEEDEKKGLFAGTANENSHGLSLMALIGVLVFGGAFLALLAPKIYLSNNIYY 68
N++ F++ + K +F + S L + L + AF+ +L P YL +
Sbjct: 104 NDRTSFIKQDIKNKDFIFEIDNDLKSRDLGISFLKSFAILKPAFICVLHPLSYLIKEANF 163
Query: 69 ISRKINTLEDQKRLL 83
+++ +D RLL
Sbjct: 164 --KQLKLFKDHYRLL 176
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 24.3 bits (51), Expect = 0.95
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 36 GLSLMALIGVLVFGGAFLAL 55
G+ L+ L+GVLV G FL +
Sbjct: 44 GVILLTLLGVLVISGIFLLM 63
>ref|NP_224050.1| putative [Helicobacter pylori J99]
Length = 141
Score = 23.1 bits (48), Expect = 2.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 74 NTLEDQKRLLLEEQQILKNELEK 96
NT +D+ R+L+EE +IL+ + +
Sbjct: 3 NTPKDRARILIEELKILQGVINR 25
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 23.1 bits (48), Expect = 2.1
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 71 RKINTLEDQKRLLLE--EQQILKNELEKERFKYYIENSENIGDIAF 114
+++ + +K+ +L+ +Q+I + +LEKE F+ E D+ F
Sbjct: 27 KQVQEILRKKKSVLKGLKQEICQKKLEKENFRSNKETQNTEEDVIF 72
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 23.1 bits (48), Expect = 2.1
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 77 EDQKRLLLEEQQILKNELEKERFKYYIENSENIGDI 112
E+Q L+LE L LE ++ + N EN DI
Sbjct: 123 ENQYFLVLESTHSLHGVLEHKKKSFMHANRENFKDI 158
>ref|NP_224199.1| putative [Helicobacter pylori J99]
Length = 254
Score = 22.7 bits (47), Expect = 2.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 62 LSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYI 103
LS+ YY ++T ++ KRL+ +I KN L E Y+
Sbjct: 165 LSDRFYYGIGGVSTFKNAKRLVEILPKIPKNRLLLETDSPYL 206
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 22.7 bits (47), Expect = 2.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 73 INTLEDQKRLLLEEQQILKNELEKERFKYYI 103
I+ +++++L + QQILK LEK ++I
Sbjct: 46 IDKNNEKQQILDKNQQILKRALEKSLKFFFI 76
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 22.3 bits (46), Expect = 3.6
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 2/41 (4%)
Query: 62 LSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYY 102
L+ N+Y K +D KR+ L ++L+NE + + K Y
Sbjct: 656 LALNLYAFLEK--HFKDDKRMALVYFKLLENEKDPKSVKIY 694
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 22.3 bits (46), Expect = 3.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 70 SRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGD 111
S + +LED K+ +++E + E E+++ E +IG+
Sbjct: 438 STALKSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGE 479
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 22.3 bits (46), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 72 KINTLEDQKRLLLEEQQILKNELEKER 98
K+ LE+QK+L E ++ K +K R
Sbjct: 321 KLKDLENQKKLKALEAELKKKNTKKPR 347
>ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99]
Length = 162
Score = 22.3 bits (46), Expect = 3.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 56 LAPKIYLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKY 101
L YL + + +++N E +KR LL K EK + Y
Sbjct: 91 LGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALY 136
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 21.9 bits (45), Expect = 4.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 77 EDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIA 113
++ KR+ L+ Q + N + FK+ +E+ IA
Sbjct: 154 QESKRINLKALQNILNNAKSVHFKFVLESQNAAHSIA 190
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 21.9 bits (45), Expect = 4.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 36 GLSLMALIGVLVFGGAFLALL 56
GL+++ L+GV+++ LAL+
Sbjct: 142 GLTIVGLVGVVIYQSPKLALV 162
>ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter pylori J99]
Length = 408
Score = 21.6 bits (44), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 40 MALIGVLVFGGAFLALLAPKIY 61
+ALI + + G FL+ L PK +
Sbjct: 229 LALIAIALLVGTFLSHLMPKSF 250
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 21.6 bits (44), Expect = 6.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 84 LEEQQILKNELEKERFKYYIENSENIGDI 112
L E+ +LK L+ + +Y ++ +IG I
Sbjct: 22 LVEKGVLKEALQSNKDRYLLKEGFDIGKI 50
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 21.6 bits (44), Expect = 6.2
Identities = 8/37 (21%), Positives = 20/37 (53%)
Query: 68 YISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIE 104
Y ++ + + + + L+L+ ++L+N + E Y E
Sbjct: 63 YANKSLKSAHNHQELILKYLEMLENSSDLENLGSYYE 99
>ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ
[Helicobacter pylori J99]
Length = 516
Score = 21.6 bits (44), Expect = 6.2
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 24 GLFAGTANENSHGLSLMALIGVLVFGGAFLALLAPKIYLSNNIYYISRK 72
G+ E SH L+ L GV + +S +Y++ ++
Sbjct: 174 GIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKE 222
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 21.6 bits (44), Expect = 6.2
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 66 IYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF 114
++ +S + ++ + LL++ L+ + K + NS N G IAF
Sbjct: 184 VFGVSGDFDDAQNALKNLLKDDDF-NEALKARQLKLSVANSVNFGRIAF 231
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 21.2 bits (43), Expect = 8.0
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 51 AFLALLAPKIYLSNNIYYISRKINTLEDQKRLLLEE-----QQILKNELE 95
A+L PK + ++ K++ + D+K LLLE+ Q +L++ ++
Sbjct: 445 AYLEQKYPKTSNNKHVTEGYVKVSLVADEKELLLEQILQEAQNLLEHRID 494
>ref|NP_224055.1| putative [Helicobacter pylori J99]
Length = 152
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/22 (45%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 79 QKRLLLEEQQILKNELE--KER 98
+++LLL ++Q+LK ++E KER
Sbjct: 77 ERKLLLHKKQLLKWQMEASKER 98
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 21.2 bits (43), Expect = 8.0
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 82 LLLEEQQILKNELEKERFKYYIEN 105
+L + ++I +++ +ERF ++EN
Sbjct: 239 ILFKSERIEESKKNQERFNAFLEN 262
>ref|NP_223980.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.2 bits (43), Expect = 8.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 45 VLVFGGAFLALLAPKIYLSNNIY 67
VL+ GGAFLA A + L IY
Sbjct: 96 VLLLGGAFLAFKA-LVELKEQIY 117
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 62 LSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKER 98
+S +++ KINT ++ +L+ +Q + ++KE+
Sbjct: 526 ISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQ 562
>ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobacter pylori J99]
Length = 407
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 34 SHGLSLMALIGVLVFGGAFLAL 55
+H L+L +G LVF FLA+
Sbjct: 89 THYLNLPETLGYLVFALLFLAI 110
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 76 LEDQKRLLLEEQQILKNELEKERFKYYIEN 105
L+D+ +L+ +K L +E K Y EN
Sbjct: 187 LQDKLDILILNPNDVKISLNEEEMKKYYEN 216
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 21.2 bits (43), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 21 EKKGLFAGTANENSHGLSL 39
++ +FA +A EN+H SL
Sbjct: 322 DRLNIFAFSAEENTHAYSL 340
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.2 bits (43), Expect = 8.0
Identities = 13/42 (30%), Positives = 22/42 (51%), Gaps = 3/42 (7%)
Query: 59 KIYLSNNIYYISRK---INTLEDQKRLLLEEQQILKNELEKE 97
K L ++ +S K + L+ + LL+E+ L N+ EKE
Sbjct: 34 KAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKE 75
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.137 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,838
Number of Sequences: 1491
Number of extensions: 5702
Number of successful extensions: 47
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 33
length of query: 114
length of database: 494,079
effective HSP length: 66
effective length of query: 48
effective length of database: 395,673
effective search space: 18992304
effective search space used: 18992304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)