BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645335|ref|NP_207506.1| hypothetical protein
[Helicobacter pylori 26695]
(124 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223369.1| putative [Helicobacter pylori J99] 231 3e-63
ref|NP_223498.1| putative [Helicobacter pylori J99] 26 0.29
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 26 0.38
ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylo... 24 1.4
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 23 1.9
ref|NP_223988.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_222783.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 3.2
ref|NP_224134.1| putative [Helicobacter pylori J99] 22 4.2
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 22 5.5
ref|NP_223600.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 5.5
ref|NP_223788.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_223243.1| putative [Helicobacter pylori J99] 21 9.3
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 21 9.3
>ref|NP_223369.1| putative [Helicobacter pylori J99]
Length = 234
Score = 231 bits (590), Expect = 3e-63
Identities = 115/120 (95%), Positives = 117/120 (96%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIPREMPQRAFFEVKN 60
MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAE ISILTTEYIPREMPQRAFFEVKN
Sbjct: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAEIISILTTEYIPREMPQRAFFEVKN 60
Query: 61 YQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTPIFK 120
YQNMLFFLLENLNK QS+DSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTP F+
Sbjct: 61 YQNMLFFLLENLNKRQSMDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTPHFQ 120
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 26.2 bits (56), Expect = 0.29
Identities = 26/126 (20%), Positives = 53/126 (41%), Gaps = 8/126 (6%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIEN-NPLSLAETISILTTEYIPREMPQRAFFEVK 59
++ K+ +Y L+ ++ H ++ E N ++ ++ ++ ++AF ++K
Sbjct: 107 LSAKDNTPLKEYKELLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKAFLQMK 166
Query: 60 NYQNMLFFLLENLNKGQSVDSFFIRELHG--ILMNFLLPNKGAFKTTDNTILGASF---- 113
+ + F N G+ +++E L L K K NT+LG SF
Sbjct: 167 AKKQSVDFYALYPNLGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGFSFVEIV 226
Query: 114 -ETTPI 118
E TP+
Sbjct: 227 CEKTPM 232
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 25.8 bits (55), Expect = 0.38
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 10/59 (16%)
Query: 72 LNKGQSVDSFFIRELHGI-LMNF---------LLPNKGAFKTTDNTILGASFETTPIFK 120
+NKG + D +F + I L+ F LL NK DNT+L A + P FK
Sbjct: 155 VNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPEFK 213
>ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylori J99]
Length = 344
Score = 23.9 bits (50), Expect = 1.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 61 YQNMLFFLLENLNKGQSVDSFFIRE 85
Y N + F+ NLN+ Q +D+F ++
Sbjct: 49 YPNRVAFIQANLNETQKLDAFLNKQ 73
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 23.5 bits (49), Expect = 1.9
Identities = 19/55 (34%), Positives = 25/55 (44%)
Query: 41 LTTEYIPREMPQRAFFEVKNYQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLL 95
L I +E + + +N L LL+ L K S D F EL+ ILM LL
Sbjct: 88 LVISVIKKEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLL 142
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.1 bits (48), Expect = 2.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 59 KNYQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLP-----NKGAFKT 103
+N Q +F+ E LNK Q +++ EL + ++ +P KG F++
Sbjct: 143 ENIQGYFYFIDEGLNKNQ---NYYKEELQKLSADYGVPLSLRYGKGLFES 189
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 23.1 bits (48), Expect = 2.4
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETIS--ILTTEYIPREMPQRA 54
++YKE +EFN Y D + A +S+A +IS I +++ EM +RA
Sbjct: 381 LDYKEGVEFNAYVADPALEHA--------RLVSVASSISYGITFLKWLCDEMQKRA 428
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 22.7 bits (47), Expect = 3.2
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 39 SILTTEYIPREMPQRAFFEVKNYQNMLFFL 68
S++ +YIP F E N + M +FL
Sbjct: 2581 SLVVNDYIPSGYKPSLFLEGANGEEMRYFL 2610
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 22.3 bits (46), Expect = 4.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 16 LTIRMAHHSTAIENNPLSLAETISILTT 43
LT+ + H STAI PL E +S+ TT
Sbjct: 62 LTLTITHISTAIVYQPLD--EKLSLETT 87
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 21.9 bits (45), Expect = 5.5
Identities = 8/31 (25%), Positives = 19/31 (60%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNP 31
++Y E+LE ++ TI+ ++ A++ +P
Sbjct: 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHP 33
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 21.9 bits (45), Expect = 5.5
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 21 AHHSTAIENNPLS----------LAETISILTTEYIPREMPQRAFFEV 58
A HS A E+ S L +LT IP E+ + AF E+
Sbjct: 150 AKHSLAYEHAYFSKRLKAFIHNDLKNAFEVLTNAQIPLELRRYAFIEI 197
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 21.9 bits (45), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 58 VKNYQNMLFFLLENLNKG 75
+K++Q L +ENLNKG
Sbjct: 92 LKDFQGALKDTMENLNKG 109
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 21.6 bits (44), Expect = 7.1
Identities = 6/31 (19%), Positives = 18/31 (57%)
Query: 27 IENNPLSLAETISILTTEYIPREMPQRAFFE 57
++++ + + ++ +E +P+EM + FE
Sbjct: 278 LKSDMREIGADVGVIVSEALPKEMERMGLFE 308
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 21.2 bits (43), Expect = 9.3
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 2 NYKEL--LEFNDYAMDLTIRMAHHSTAIENNP 31
NY++ L+F+D+A + + +A + ++ NP
Sbjct: 242 NYRQSHNLKFSDFAKETPLEVAKNYFHLKENP 273
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 21.2 bits (43), Expect = 9.3
Identities = 7/18 (38%), Positives = 12/18 (65%)
Query: 2 NYKELLEFNDYAMDLTIR 19
N K + ++NDY DL ++
Sbjct: 167 NLKTIEQYNDYVRDLLMK 184
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,716
Number of Sequences: 1491
Number of extensions: 5612
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 15
length of query: 124
length of database: 494,079
effective HSP length: 68
effective length of query: 56
effective length of database: 392,691
effective search space: 21990696
effective search space used: 21990696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 43 (21.2 bits)