BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646199|ref|NP_207507.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(114 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223369.1| putative [Helicobacter pylori J99] 218 3e-59
ref|NP_223803.1| putative cAMP-induced cell filamentation p... 27 0.11
ref|NP_222991.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223994.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_222827.1| putative [Helicobacter pylori J99] 22 6.2
ref|NP_223900.1| NADH oxidoreductase I [Helicobacter pylori... 21 8.0
ref|NP_223610.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223581.1| GTP CYCLOHYDROLASE I [Helicobacter pylori ... 21 8.0
>ref|NP_223369.1| putative [Helicobacter pylori J99]
Length = 234
Score = 218 bits (556), Expect = 3e-59
Identities = 107/113 (94%), Positives = 111/113 (97%)
Query: 2 PMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQ 61
PMA+KEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGR+LIFYS LEQ
Sbjct: 122 PMAMKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRILIFYSALEQ 181
Query: 62 NLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMILNKNKP 114
NLIPFVITKEQKEA+IKALDT NTESLYQLAKVSQEFELTRIQGQM+LNKNKP
Sbjct: 182 NLIPFVITKEQKEAYIKALDTRNTESLYQLAKVSQEFELTRIQGQMVLNKNKP 234
>ref|NP_223803.1| putative cAMP-induced cell filamentation protein [Helicobacter
pylori J99]
Length = 175
Score = 27.3 bits (59), Expect = 0.11
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 23 EEKLKAILEQHILFERIHPFSDGNGRVGRM 52
+ I+E+++ HPF +GNGR R+
Sbjct: 77 QNNFNQIIEKYVEMNIAHPFLEGNGRATRI 106
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 23.9 bits (50), Expect = 1.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 58 VLEQNLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMI 108
V+ +NL F T E++EA I +++C + A S ++ R+ +++
Sbjct: 20 VMGENLKDFSATLEEQEADIIIINSCTVTNGTDSAVRSYARKMARLDKEVL 70
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 22.3 bits (46), Expect = 3.6
Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 10/54 (18%)
Query: 67 VITKEQK---EAHIKALDTCNTESL-------YQLAKVSQEFELTRIQGQMILN 110
+IT E K H A D N + + Y + +S+EF++++ + + ILN
Sbjct: 109 IITLENKFKDMGHYAASDEVNEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILN 162
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 21.6 bits (44), Expect = 6.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 17 KTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVL--EQNLIPFVITKEQKE 74
K+ D +L E H+L+ ++ F GNG +FY +L +NL V+ + + E
Sbjct: 56 KSPLDSSLELYKNSEIHMLYPYLYYFGLGNG------VFYRLLLGNENLKRLVVIEPEIE 109
>ref|NP_223900.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 159
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 10 DNLNYKMKTLQDKEEKLKAI 29
+ L Y + LQDK + KAI
Sbjct: 131 ETLQYALMVLQDKIRRSKAI 150
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 17 KTLQDKEEKLKAIL 30
K L DKE K KAIL
Sbjct: 34 KALNDKEAKNKAIL 47
>ref|NP_223581.1| GTP CYCLOHYDROLASE I [Helicobacter pylori J99]
Length = 180
Score = 21.2 bits (43), Expect = 8.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 49 VGRMLIFYSVLEQNLIPF 66
V + + FYS E +L+PF
Sbjct: 61 VAQNIEFYSTCEHHLLPF 78
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,035
Number of Sequences: 1491
Number of extensions: 4917
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 114
length of database: 494,079
effective HSP length: 66
effective length of query: 48
effective length of database: 395,673
effective search space: 18992304
effective search space used: 18992304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)