BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645338|ref|NP_207510.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(133 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223372.1| putative [Helicobacter pylori J99] 259 1e-71
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 34 0.002
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 31 0.013
ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 28 0.087
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 26 0.33
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 25 0.73
ref|NP_223399.1| putative [Helicobacter pylori J99] 25 0.96
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 23 2.1
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 23 2.1
ref|NP_224181.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223192.1| cag island protein, DNA transfer protein [... 23 2.8
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 23 2.8
ref|NP_223459.1| putative lipopolysaccharide biosynthesis p... 23 3.6
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 23 3.6
ref|NP_222742.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 4.8
ref|NP_223073.1| PHOSPHATIDYLSERINE SYNTHASE [Helicobacter ... 22 4.8
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 22 6.2
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 22 6.2
ref|NP_223403.1| putative abc transporter, ATP-binding prot... 22 6.2
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 22 6.2
ref|NP_223017.1| putative [Helicobacter pylori J99] 22 6.2
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 22 6.2
ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99] 22 8.1
ref|NP_222749.1| putative [Helicobacter pylori J99] 22 8.1
>ref|NP_223372.1| putative [Helicobacter pylori J99]
Length = 133
Score = 259 bits (663), Expect = 1e-71
Identities = 129/133 (96%), Positives = 131/133 (97%)
Query: 1 MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH 60
MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH
Sbjct: 1 MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH 60
Query: 61 AYSESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVK 120
AYSESVFHYDFYM DL+ CLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVE+K
Sbjct: 61 AYSESVFHYDFYMRDLETCLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEIK 120
Query: 121 TESTSRFYTIKIA 133
TESTSRFYTIKIA
Sbjct: 121 TESTSRFYTIKIA 133
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 33.9 bits (76), Expect = 0.002
Identities = 28/86 (32%), Positives = 40/86 (45%), Gaps = 11/86 (12%)
Query: 21 KGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESVFHYDFYMHDLKACL 80
K + + GV GSGK+TL L HL ++ S T SL+ H D Y + K L
Sbjct: 26 KESLAILGVSGSGKSTL----LSHLATMLKPDSGTVSLLE-------HQDIYALNSKKLL 74
Query: 81 ELGMLECLLEKGIHFVEWGDEKLEKI 106
EL L+ + H++ G LE +
Sbjct: 75 ELRRLKVGIVFQSHYLFKGFSALENL 100
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 30.8 bits (68), Expect = 0.013
Identities = 15/35 (42%), Positives = 19/35 (53%)
Query: 21 KGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPT 55
K +LL G GSGKT + Q KHL + I + T
Sbjct: 148 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT 182
>ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 199
Score = 28.1 bits (61), Expect = 0.087
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 28 GVVGSGKTTLVQACLKHLGLD 48
G VGSGKT L++A +H+ D
Sbjct: 8 GPVGSGKTALIEALTRHMSKD 28
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 26.2 bits (56), Expect = 0.33
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 37 LVQACLKHLGLDIQATSPTFSLMHAYSESVFHYDFYMHDLKACLELGMLECLLEKGIHFV 96
+ + L+ +G+D + P + S HYD H L+ L C ++ IH+V
Sbjct: 440 IAEEILRFVGIDNLVSKPLHCVSSKNSNP--HYD--THRFFENLKHKALACGFKEVIHYV 495
Query: 97 EWGDEKLEKILKKYDLAIKVVEVKTESTSRFYTIK 131
+ EK +K+ +++ +E++ T+ T++
Sbjct: 496 FYSKEKQQKL--GFEVLEDPLELQNPITTELNTLR 528
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 25.0 bits (53), Expect = 0.73
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 16 LKDDFKGVVLLKGVVGSGKTTLVQACLK 43
LK +V LKG GSGK++LV L+
Sbjct: 358 LKFQQNEIVALKGESGSGKSSLVNLILR 385
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 24.6 bits (52), Expect = 0.96
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 8 LDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQA 40
+ K+ I K+ K VLL G G GK++L+ A
Sbjct: 32 MSKMLEFIKKEKPKMNVLLMGATGVGKSSLINA 64
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 23.5 bits (49), Expect = 2.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 23 VVLLKGVVGSGKTT 36
VVL+ G+ GSGKTT
Sbjct: 96 VVLMAGLQGSGKTT 109
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 23.5 bits (49), Expect = 2.1
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 4 NLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHA 61
NLDE + A LK ++ + KG+ G+ ++ +L +I+ F + A
Sbjct: 42 NLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQA 99
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 23.1 bits (48), Expect = 2.8
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 18 DDFKGVVLLKGVVGSGKTTLVQACLKHLGL-DIQATSPTFSLMHAYSESVF 67
++FK + G +GKT L++A + GL D A + HA + S F
Sbjct: 19 ENFKLINFFTGQNDAGKTNLLEALYTNTGLCDPTANQVSLPPEHAVNISEF 69
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 23.1 bits (48), Expect = 2.8
Identities = 24/89 (26%), Positives = 43/89 (47%), Gaps = 11/89 (12%)
Query: 4 NLDELDKVAAAILKDDF---KGVVLLKGVVGSGKTTLVQACLKHLG-----LDIQATSPT 55
NL + + A + +KD K V++ G GSGKTT +++ ++ + + I+ T
Sbjct: 152 NLLDNKEQAISAIKDGIAIGKNVIVCGGT-GSGKTTYIKSIMEFIPKEERIISIEDTEEI 210
Query: 56 FSLMHA-YSESVFHYDFYMHD-LKACLEL 82
H Y++ F + D LK+CL +
Sbjct: 211 VFKHHKNYTQLFFGGNITSADCLKSCLRM 239
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 23.1 bits (48), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 84 MLECLLEKGIHFVEWGDEKLEKILKKYD 111
M+E + K I E ++ +EK+L YD
Sbjct: 4 MMENRMPKEIQKTEASEKSIEKVLNAYD 31
>ref|NP_223459.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 292
Score = 22.7 bits (47), Expect = 3.6
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 68 HYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLE 104
HY + + C+EL C+LE I E E LE
Sbjct: 119 HYSLW----QKCIELNEAICILEDDITLKEHFKESLE 151
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 22.7 bits (47), Expect = 3.6
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 59 MHAYSESVFHYDFYMHDLKACLELGMLECLLEKGI---HFVEWGDEKLEKILK-KYDLAI 114
M AY+E FY +E +L+ L E + HF + E+ ++I++ K +
Sbjct: 250 MRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFK 309
Query: 115 KVVEVKTESTSRFYTIKI 132
+E+ E S+++ ++
Sbjct: 310 DRIELIEELLSKYHPTRL 327
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 22.7 bits (47), Expect = 3.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 57 SLMHAYSESVFHYDFYMHDLKACLE 81
SL++AY ++F+ D+ + + + LE
Sbjct: 401 SLINAYDNTIFYNDYLLDKIISMLE 425
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.3 bits (46), Expect = 4.8
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 69 YDFYMHDLKACL-ELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVE 118
+ F +++ K+ + E C LEKGI+ +E + ++ +KK + IK +E
Sbjct: 426 WKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLENEIKELE 476
>ref|NP_223073.1| PHOSPHATIDYLSERINE SYNTHASE [Helicobacter pylori J99]
Length = 237
Score = 22.3 bits (46), Expect = 4.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 69 YDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKL 103
Y F + A L +L LL+ HF+E EKL
Sbjct: 124 YSFIGIPIPAAAVLVVLCVLLDNKYHFLEGNTEKL 158
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 21.9 bits (45), Expect = 6.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 62 YSESVFHYDFYMHDLKACLELGMLECLL 89
Y +++F D Y+ ++ A +LG+ + LL
Sbjct: 226 YPQTIFKKDLYLLEIIALGKLGIKKSLL 253
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 21.9 bits (45), Expect = 6.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 18 DDFKGVVLLKGVVGSGKTTLVQACLKHL 45
D+ G ++ G GSGK+T + + +L
Sbjct: 258 DNVVGHTMIIGSTGSGKSTFISFLIANL 285
>ref|NP_223403.1| putative abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 223
Score = 21.9 bits (45), Expect = 6.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 21 KGVVLLKGVVGSGKTTLVQA 40
K V + G GSGK+TL+++
Sbjct: 31 KDFVFISGPSGSGKSTLLRS 50
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 21.9 bits (45), Expect = 6.2
Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Query: 22 GVVLLKGVVGSGKTTLVQAC--LKHLGLDIQ 50
G++LL G+VG T L+ + GL+IQ
Sbjct: 912 GLILLIGMVGKNATLLIDVANEERKKGLNIQ 942
>ref|NP_223017.1| putative [Helicobacter pylori J99]
Length = 321
Score = 21.9 bits (45), Expect = 6.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHL 45
+ L+ G +GSGKT+ + L +
Sbjct: 6 ITLITGFLGSGKTSFLSEYLNQI 28
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 21.9 bits (45), Expect = 6.2
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 22 GVVLLKGVVGSGKTTLV 38
G L+ G GSGK+TL+
Sbjct: 440 GHTLVIGATGSGKSTLI 456
>ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99]
Length = 162
Score = 21.6 bits (44), Expect = 8.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFS 57
++L G +GSGK++L Q L L++ T S
Sbjct: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIIS 37
>ref|NP_222749.1| putative [Helicobacter pylori J99]
Length = 137
Score = 21.6 bits (44), Expect = 8.1
Identities = 16/68 (23%), Positives = 30/68 (43%), Gaps = 16/68 (23%)
Query: 56 FSLMHAYSESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIK 115
F+L+H E +++ ++ G E L E EK + +LK+++ A K
Sbjct: 32 FTLLHVSME------VFIYSESGMMDYGQTEALEE----------EKAKALLKQFEDAFK 75
Query: 116 VVEVKTES 123
++ ES
Sbjct: 76 KENIECES 83
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.139 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,452
Number of Sequences: 1491
Number of extensions: 6197
Number of successful extensions: 46
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 26
length of query: 133
length of database: 494,079
effective HSP length: 69
effective length of query: 64
effective length of database: 391,200
effective search space: 25036800
effective search space used: 25036800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)