BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645339|ref|NP_207511.1| DNA polymerase III gamma
and tau subunits (dnaX) [Helicobacter pylori 26695]
(578 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 1003 0.0
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 44 9e-06
ref|NP_223025.1| putative [Helicobacter pylori J99] 41 7e-05
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 40 2e-04
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 40 2e-04
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 33 0.020
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 33 0.020
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 32 0.034
ref|NP_223176.1| putative [Helicobacter pylori J99] 32 0.034
ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helic... 32 0.034
ref|NP_223787.1| putative [Helicobacter pylori J99] 31 0.075
ref|NP_223642.1| putative [Helicobacter pylori J99] 31 0.098
ref|NP_222874.1| putative [Helicobacter pylori J99] 31 0.098
ref|NP_223645.1| putative [Helicobacter pylori J99] 30 0.13
ref|NP_222827.1| putative [Helicobacter pylori J99] 30 0.13
ref|NP_223770.1| putative [Helicobacter pylori J99] 30 0.22
ref|NP_223761.1| putative [Helicobacter pylori J99] 29 0.37
ref|NP_223560.1| putative [Helicobacter pylori J99] 29 0.37
ref|NP_222877.1| putative [Helicobacter pylori J99] 29 0.37
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 28 0.49
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 28 0.49
ref|NP_223088.1| putative [Helicobacter pylori J99] 28 0.63
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 28 0.83
ref|NP_223515.1| putative [Helicobacter pylori J99] 28 0.83
ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 1.1
ref|NP_223625.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 1.4
ref|NP_223204.1| cag island protein [Helicobacter pylori J99] 27 1.4
ref|NP_222962.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_222859.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 27 1.8
ref|NP_223611.1| putative [Helicobacter pylori J99] 27 1.8
ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE... 26 2.4
ref|NP_222772.1| putative [Helicobacter pylori J99] 26 2.4
ref|NP_224153.1| putative [Helicobacter pylori J99] 26 3.2
ref|NP_223389.1| putative [Helicobacter pylori J99] 26 3.2
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 26 3.2
ref|NP_222885.1| putative restriction enzyme [Helicobacter ... 26 3.2
ref|NP_222831.1| putative [Helicobacter pylori J99] 25 4.1
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 25 5.4
ref|NP_223501.1| HYDROXYETHYLTHIAZOLE KINASE [Helicobacter ... 25 5.4
ref|NP_223387.1| putative [Helicobacter pylori J99] 25 5.4
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 25 5.4
ref|NP_223889.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_223010.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 25 7.0
ref|NP_222839.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 25 7.0
ref|NP_222774.1| putative [Helicobacter pylori J99] 25 7.0
ref|NP_223123.1| putative [Helicobacter pylori J99] 24 9.2
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 24 9.2
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 1003 bits (2594), Expect = 0.0
Identities = 532/594 (89%), Positives = 546/594 (91%), Gaps = 28/594 (4%)
Query: 1 MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARAL 60
MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARAL
Sbjct: 1 MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARAL 60
Query: 61 MCEEGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKI 120
MC+ GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKI
Sbjct: 61 MCKTGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKI 120
Query: 121 FIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENS 180
FIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENS
Sbjct: 121 FIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENS 180
Query: 181 VISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
VISHLKTILEKEQVSYE+SALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG
Sbjct: 181 VISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Query: 241 AIDRSVLEDFFQSLINQDEARLKERYAILENYETESVLEEMMLFLKAKLLSPDFYSILLI 300
AIDRSVLEDFFQSLINQDEARL+ERYAILENYETE VLEEMMLFLKAKLLSPD YSILLI
Sbjct: 241 AIDRSVLEDFFQSLINQDEARLQERYAILENYETEGVLEEMMLFLKAKLLSPDSYSILLI 300
Query: 301 ERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKFKALDDAILELEQTPFNQNPSISY 360
ERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALK KALDDAI+ELEQTPFNQ+PSISY
Sbjct: 301 ERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKLKALDDAIVELEQTPFNQSPSISY 360
Query: 361 NAPKQESKNIEKREKIEQIERIEGTEKREKLEKKENAETPQTPMLSAKDRIFHNLFKQVQ 420
NAPKQE K+ ERIEG REKLEK+E ETPQTPMLSAKDRIFHNLFKQVQ
Sbjct: 361 NAPKQEPKS---------TERIEG---REKLEKRERIETPQTPMLSAKDRIFHNLFKQVQ 408
Query: 421 TLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSIVDGVFG 480
TLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSIVDGVFG
Sbjct: 409 TLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSIVDGVFG 468
Query: 481 KGESIKIALKNHSENKSTLE---VVKELKFPYSKPKPTTETTAETKEKETKE-------- 529
KGE+IKIALK+H ENKS E VKE KFP KPK TTETTAE +EKETKE
Sbjct: 469 KGENIKIALKHHLENKSAPEETKEVKEFKFPPLKPKLTTETTAEMQEKETKEAVGKALQT 528
Query: 530 -----KEIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEIKSEFEIKSVELL 578
KE+QEN+TKE +E QPK+APTALQEFMANHS LIEEIKSEFEIKSVELL
Sbjct: 529 KENDTKEVQENETKETKEAQPKEAPTALQEFMANHSNLIEEIKSEFEIKSVELL 582
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 44.3 bits (103), Expect = 9e-06
Identities = 37/136 (27%), Positives = 60/136 (43%), Gaps = 17/136 (12%)
Query: 16 LVGQESVAKTLSLAL--------DNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPK 67
+VGQE K ++ A+ D+ + ++LF G G GKT S++ A+ L + K
Sbjct: 570 VVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLF--DSDK 627
Query: 68 AVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVH 127
+ I + H I + G ++ L E R KP Y + ++DEV
Sbjct: 628 NL---IRIDMSEYMEKHAISRLIGAAPGYVGYEEGGQLTEAVRRKP----YSVVLLDEVE 680
Query: 128 MFTTEAFNALLKTLEE 143
+ FN LL+ L+E
Sbjct: 681 KAHPDVFNLLLQVLDE 696
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 41.2 bits (95), Expect = 7e-05
Identities = 51/247 (20%), Positives = 102/247 (40%), Gaps = 26/247 (10%)
Query: 338 KALDDAILELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKLEKKENA 397
K + + + E ++ +NP E++ + K E++ + E +E+LE +
Sbjct: 187 KEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSK--ELETQEELETPKEE 244
Query: 398 ETPQTPMLSAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLA- 456
Q P+ I ++ Q + E K I+ D + K T E+
Sbjct: 245 TQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQEN 304
Query: 457 TDKDKELLRERFKIVKSIVDGVFGKGESIKIALKNHSENKSTLEVVKELKFPYSKPKPTT 516
T+ +++ + +I K + E+ ++A K + E+ + + K
Sbjct: 305 TETPQDIETQELEIPK--------EEETQEVAEKTQVQGLEKEEIAET-----PQEKEIQ 351
Query: 517 ETTAET-KEKETKEKEIQENDT-------KEIQEVQPKQAPTALQEFMANHSELIEEIKS 568
ET ET +E E +++++QEN+T + Q +Q K+ P +E +H E IE+I
Sbjct: 352 ETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQ--EETQEDHYESIEDIPE 409
Query: 569 EFEIKSV 575
K++
Sbjct: 410 PVMAKAM 416
Score = 37.0 bits (84), Expect = 0.001
Identities = 65/300 (21%), Positives = 120/300 (39%), Gaps = 22/300 (7%)
Query: 273 ETESVLEEMMLFLKAKLLSPDFYSILLIERFFKIIMSSLSLLKEGANASFVLLLLKMKFK 332
E + LE + +K L + +L K + S+ S L+ N +L+ +
Sbjct: 85 EAQPFLEGFEMKIKKPFLPTEMLKVLQ-----KKLGSNASELEPSQNLDPTQEILETNWD 139
Query: 333 EALKFKALDDAILELEQTPFNQNPSI-SYNAPKQESKNIEKREKIEQIERIEGTEKREKL 391
E + L D ++ P N+ + + N + E+ E +E++++ E E E+ ++
Sbjct: 140 E---LENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEK 196
Query: 392 EKKENAETPQTPMLSAKDRIFHNLFKQVQTLV---YERNYELGAVFEKNIRFIDFDSQTK 448
+K+E AE PQ D ++ V E EL E+ +T+
Sbjct: 197 QKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQ 256
Query: 449 TLTWESLATDKDK---ELLRERFKIVKSIVDGVFGKGESIKIALKNHSENKSTLEVVKEL 505
+ E +D + L ++VK I + + K + EN T + ++
Sbjct: 257 EIKEEKQEKTQDSPSAQELEAMQELVKEIQEN--SNDQENKKETQETQENTETPQDIETQ 314
Query: 506 KFPYSKPKPTTETTAETKEKETKEKEIQEN-DTKEIQEVQPKQAPTALQEFMANHSELIE 564
+ K + T E +T+ + +++EI E KEIQE Q + QE A +L E
Sbjct: 315 ELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETP----QELEAQDEKLQE 370
Score = 32.7 bits (73), Expect = 0.026
Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 16/229 (6%)
Query: 348 EQTPFNQNPSISYNAPKQE--SKNIEKREKIEQIERIEGTEKREKLE------KKENAET 399
E+ P + S PK E SK +E +E++E + E T+++E ++ K+E E
Sbjct: 208 EEKPKDDETQGSVEPPKDEEVSKELETQEELETPK--EETQEQEPIKEETQEIKEEKQEK 265
Query: 400 PQTPMLSAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDK 459
Q + + L K++Q ++ + + D +T+ L + ++
Sbjct: 266 TQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQEL---EIPKEE 322
Query: 460 DKELLRERFKIVKSIVDGVFGKGESIKIALKNHSENKSTLEVVKELKFPYSKPKPTT--E 517
+ + + E+ + V+ + + K + E LE E PK + E
Sbjct: 323 ETQEVAEKTQ-VQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQE 381
Query: 518 TTAETKEKETKEKEIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEI 566
+ ++KET ++E QE+ + I+++ A+ E + +E + +I
Sbjct: 382 SAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKI 430
Score = 25.0 bits (53), Expect = 5.4
Identities = 47/238 (19%), Positives = 97/238 (40%), Gaps = 18/238 (7%)
Query: 352 FNQNPSISY---NAPKQESKNIEKREKIEQIE-RIEGTEKREKLEKKENAET-PQTPMLS 406
FNQNP I + K+ +IE +++ R++G + + E E Q L
Sbjct: 6 FNQNPMIEKLLESVSKKLELSIENFNHYQELSARLKGDPEWLLIADDECLEKLDQVDWLE 65
Query: 407 AKDRIFHNLFKQVQTLVYERNYELGAV---FEKNIRFIDFDSQTKTLTWESLATDKDK-- 461
K+ I N + +Y++ E FE I+ ++ + + L ++ +
Sbjct: 66 LKETISQN---KNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEMLKVLQKKLGSNASELE 122
Query: 462 --ELLRERFKIVKSIVDGVFGKGESIKIALKNHSENKSTLEVVKELKFPYSKPKPTTETT 519
+ L +I+++ D + G+ +A + + + L + E + K + E
Sbjct: 123 PSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVK 182
Query: 520 AET---KEKETKEKEIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEIKSEFEIKS 574
E ++E KEK+ QE E +PK T E+ +E++++ E+++
Sbjct: 183 KEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELET 240
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 40.0 bits (92), Expect = 2e-04
Identities = 49/174 (28%), Positives = 75/174 (42%), Gaps = 25/174 (14%)
Query: 79 SALNNHHI----DIIEMDGA------SNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHM 128
++L HHI +IIE D + I+ + +I + K S F+I
Sbjct: 21 ASLFKHHIKFYTEIIEKDKKVIKTFNKDFKIEHAKEVISKAHLKHS--ELNAFLI-AAPS 77
Query: 129 FTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR-TQHFRFKKIPENSVISHLKT 187
+ EA NALLK LEEPP++V F++ + ATI SR + + +KIP + L
Sbjct: 78 YGVEAQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKEDKRQKIPLKPLDLDLSK 137
Query: 188 I-----------LEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAI 230
+ L+KE + E++ + R I L EQ + D AI
Sbjct: 138 LDLKDIYAFLKNLDKENFDSRENQRERIESLLESIHRHKIPLNEQELQAFDLAI 191
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 39.7 bits (91), Expect = 2e-04
Identities = 48/185 (25%), Positives = 83/185 (43%), Gaps = 28/185 (15%)
Query: 219 LEQAINYCDNAITESKVAEMLGAIDRSV-LEDFFQSLINQDEARLKERYAILENYETESV 277
LE+A DNA + ++ A++ + DF LI ++E + + +N E+E
Sbjct: 389 LEKAHQILDNANSFVPKMQLHKALEELFNIYDFLNKLIAKEEP-----WVLHKNNESEK- 442
Query: 278 LEEMMLFLKAKLLSPDFYSILLIERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKF 337
LE ++ + LL F + + S++ L ++F + + ++ K
Sbjct: 443 LEALLSLIANTLLQSSFLLYAFMPK------SAMKLA-----SAFRVEITPNNYERFFKA 491
Query: 338 KALDDAILELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKLEKKENA 397
K L D +L+ + F++ I + IEK EKIE+IE+ E EK EKKE
Sbjct: 492 KKLQDMVLQDTEPLFSKIEKI---------EKIEKIEKIEKIEKGE-EALAEKAEKKEKE 541
Query: 398 ETPQT 402
+ P T
Sbjct: 542 KAPPT 546
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 33.1 bits (74), Expect = 0.020
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 469 KIVKSIVDGV---FGKGESIKIALKNHSENKSTLEVVKELKFPYSKPKPTTETTAETKEK 525
K+ K IVDG+ + K +++ ++ +T K L SK ET A+ K K
Sbjct: 48 KLYKYIVDGIKEQIQANQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPK 107
Query: 526 ETKEKEIQEN----DTKEIQEVQPKQAPTALQE---FMANHSELIEEIKSEFE 571
+TKEK+ + KEI+ V + T L E +HS+ IE+ K + +
Sbjct: 108 KTKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQ-IEKAKQKLQ 159
Score = 25.0 bits (53), Expect = 5.4
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 36/210 (17%)
Query: 363 PKQESKNIEKREKIEQIERIEGTEKREKLEKKENAETPQTPMLSAKDRIFHNLFKQVQTL 422
PK +K K K E+ + + + K K++ E P P++ K+ N F+ L
Sbjct: 84 PKPLAKKASKTPKKEETK----AQPKPKKTKEKKKEAP-APIIKKKEIEIVNTFENQTPL 138
Query: 423 V-----------YERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIV 471
V E+ + +K+ ++ +Q+ T T + + + ++ V
Sbjct: 139 VENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEV 198
Query: 472 KSIVDGVFGKGESIK------IALKNHSENKSTLEVVKELKFPYSKPKPTTETTAETKEK 525
K + + E+IK + +N T V E K KPT A
Sbjct: 199 KKQEQEI-KRHENIKRRTGFRVIKRNDETENETENSVTESK------KPTQSAAAIF--- 248
Query: 526 ETKEKEIQENDTKEIQEV----QPKQAPTA 551
E +KE QE D +E ++ +PK PTA
Sbjct: 249 EDIKKEWQEKDKQETKKTKKPSKPKATPTA 278
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 33.1 bits (74), Expect = 0.020
Identities = 31/120 (25%), Positives = 48/120 (39%), Gaps = 16/120 (13%)
Query: 366 ESKNIEKREKIEQIERIEGTEKREKLEKKEN---------AETPQTPMLSAKDRIFHNLF 416
++K K EK +QI + K K E KE A P+ +++ +L
Sbjct: 219 DNKKEVKEEKCDQINQASALWKMNKSELKEKDYKDFYQSFAHDNSEPLSYIHNKVEGSL- 277
Query: 417 KQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSIVD 476
+ TL Y + +F +D+ S K TD DKELL + VK ++D
Sbjct: 278 -EYTTLFYIPSKAPFDLFR-----VDYKSGVKLYVKRVFITDDDKELLPSYLRFVKGVID 331
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 32.3 bits (72), Expect = 0.034
Identities = 32/117 (27%), Positives = 53/117 (44%), Gaps = 12/117 (10%)
Query: 469 KIVKSIVDGVFGKGESIKIAL---------KNHSENKSTLEVVKELKFPYSKPKPTTETT 519
KI I+D V + +K L N+ + EVVK+L+ S+ + T
Sbjct: 81 KITPDIMDVVLRSIDLMKTLLVTIRDTGSDTNNGKENEIEEVVKKLQAITSQNLEGAKET 140
Query: 520 AETKEKETKEKEIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEIKSEFEIKSVE 576
+ TKE KE + +EN K +EV+ + PT E + + + L +E ++ S E
Sbjct: 141 SGTKEAPEKEVK-KENKEKAKEEVKANKTPTT--ENLTSDNPLADEPDLDYANMSAE 194
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 32.3 bits (72), Expect = 0.034
Identities = 35/184 (19%), Positives = 77/184 (41%), Gaps = 25/184 (13%)
Query: 361 NAPKQESKNIEKREKIEQIERIEGTEKREKL--EKKENAETPQTPMLSAKDRIFHNLFKQ 418
NAP E KN +K E+ + + E+R + E+K+ T + +++ H+ +
Sbjct: 280 NAPTLEEKNYQKAER-----KFDAKEERRRSRDERKKTKATKKAMEFEEREKE-HDERDE 333
Query: 419 VQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSIVDGV 478
+T E+ + ++ D + + A + ++E+ +E S +
Sbjct: 334 KET-------------EERRKALEMDKGNEKVN----AKENEREINQESANEPSSENNAT 376
Query: 479 FGKGESIKIALKNHSENKSTLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQENDTK 538
E+ + ++ ++ ++ KE K + K + +E E + +E QE D K
Sbjct: 377 LKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEK 436
Query: 539 EIQE 542
E++E
Sbjct: 437 ELEE 440
>ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
Length = 336
Score = 32.3 bits (72), Expect = 0.034
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Query: 9 RPKHFSELVGQESVAKTLSLAL----DNQRLANAYLFSGLRGSGKTSSSRIFARAL 60
RP + + +GQE + L +++ Q + LF G G GKTS S I A+ +
Sbjct: 22 RPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEM 77
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 31.2 bits (69), Expect = 0.075
Identities = 49/226 (21%), Positives = 94/226 (40%), Gaps = 40/226 (17%)
Query: 368 KNIEKREKIEQIERIEGTEKREKLEKK-----ENAETPQTPMLSAKDRIFHNLFKQVQTL 422
KN+ K+ + E E +EG +++EK + K EN + Q+ ++ + K+ +
Sbjct: 164 KNLYKKNEEEFKEILEGFKRKEKFKGKILKEFENDKHNQSEIVGLEK------LKEKIEI 217
Query: 423 VYERNYELGAVFEKNIRFIDFDSQTKTLTWES-------------LATDKDKELLRERFK 469
V+ +N A+ E ++ DFDS WE + T +++ + + +
Sbjct: 218 VFSKNQTELALLECDL--TDFDSIENHSIWEQKIVGSGDVAIANLIKTLSNEDWVAQGRE 275
Query: 470 IVKSIVDGVFGKGESIKIALKNHSEN------KSTLEVVKELKFPYSKPKPTTETTAETK 523
VK F + E+I K E+ + + + +K++K Y T T E
Sbjct: 276 YVKDNSICPFCQKETITEEFKKQLESYFDTSYQESTDTIKKMKEDY------TNKTDEAL 329
Query: 524 EK--ETKEKEIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEIK 567
E+ E + E + TK E + T + AN ++I++ K
Sbjct: 330 ERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDKSK 375
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 30.8 bits (68), Expect = 0.098
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 490 KNHSENKSTLEVVK----ELKFPYSKPKPTT--ETTAETKEKETKEKEIQENDT 537
+N+ +NK E+ K +L F S P P ET+ E KE+E + KE + +T
Sbjct: 125 QNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKET 178
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 30.8 bits (68), Expect = 0.098
Identities = 29/88 (32%), Positives = 41/88 (45%), Gaps = 6/88 (6%)
Query: 462 ELLRERFKIVKSIVDGVFGKGESIKIALKNHSENKSTLEVVKELKFPYSKPKPTTETTAE 521
E L E K+ K+I DG F + K S ++T K + +P E
Sbjct: 13 ETLNEIEKMAKTIDDG-FNTAQKTPSFFKTPSHLQNT----PNSKNANTPLEPKNAAKIE 67
Query: 522 TKEKETKEK-EIQENDTKEIQEVQPKQA 548
T+EK T+EK E +E T+EI + P QA
Sbjct: 68 TQEKITEEKEEAKEIITEEIVQENPTQA 95
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 30.4 bits (67), Expect = 0.13
Identities = 26/102 (25%), Positives = 46/102 (44%), Gaps = 10/102 (9%)
Query: 487 IALKNHSENKSTLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQENDTKE-----IQ 541
+ L N E + + +E + T T+E+ T+E+ QE DT+E I+
Sbjct: 355 VELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIK 414
Query: 542 EVQPKQAPTALQ---EFMANHSELIEEIKSEFE--IKSVELL 578
+ P L +F + LI+ K+ ++ IK++ELL
Sbjct: 415 QETPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELL 456
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 30.4 bits (67), Expect = 0.13
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 486 KIALKNHSENKSTLEVVKELKFPY-------SKPKPTTETTAETKEKETKEKEIQENDTK 538
K+ + N +E + ++ KE+ F SKPKP T+ ++ K +I + +
Sbjct: 436 KLEVINATEGGARIKGTKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIAKKKCE 495
Query: 539 EIQEVQPKQAPTALQEFMANHSELIEEIKSEFEIKSVELL 578
EI + + T ++E +E +E+++ E +E L
Sbjct: 496 EIIK-YANEKKTQVEEAFLKVAEFLEKVEKLHEKNKLEEL 534
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 29.6 bits (65), Expect = 0.22
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 296 SILLIERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKFKALDDAILELEQTPFNQN 355
+I +++ K + L+ L + + L+ +K +E K L + TP N+N
Sbjct: 123 AIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSS------TPANKN 176
Query: 356 PSISYNAPKQESKNIEKREKIE 377
P + PK + K +++ K+E
Sbjct: 177 PPLKAETPKNQEKKTQEKAKVE 198
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 28.9 bits (63), Expect = 0.37
Identities = 26/94 (27%), Positives = 39/94 (40%), Gaps = 11/94 (11%)
Query: 459 KDKELLRERFKIVKSIVDGVFGKGESIKIALKNHSENKSTLEVVKEL----KFPYSKPKP 514
K+ + KI++ + +GV E IK + S K T E +KEL K P S
Sbjct: 42 KNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTNEQIKELLNNAKIPTSGRDA 101
Query: 515 TTETT-------AETKEKETKEKEIQENDTKEIQ 541
T T E K K+ I++ KE++
Sbjct: 102 ITFGTNNLNPEMVEFLHKNNKKMIIEKASNKELE 135
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 28.9 bits (63), Expect = 0.37
Identities = 42/202 (20%), Positives = 76/202 (36%), Gaps = 31/202 (15%)
Query: 355 NPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKLEKKENAETPQTPMLSAKDRIFHN 414
NP + NAP +EK EK ++I ++ +EK K+ N+ A D+ N
Sbjct: 331 NPPPNDNAPTP----LEKEEKTKEI-----SDNKEKA-KETNSSAQSVQNTQASDKTSDN 380
Query: 415 LFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSI 474
+ + +L + ++ ++ + + K + + K+ K++
Sbjct: 381 KSTTPKETIRHFTQQLKQEIQ------EYKPPMSKISMDLFPKELGKVEVTIQ-KVGKNL 433
Query: 475 VDGVFGKGESIKIALKNHSENKSTLEVV--------------KELKFPYSKPKPTTETTA 520
V S++ L N + K++L + KE + P +PK +
Sbjct: 434 KVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQE 493
Query: 521 ETKEKETKEKEIQENDTKEIQE 542
T KE K QEN E QE
Sbjct: 494 LTPLKENALKSYQENTDHENQE 515
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 28.9 bits (63), Expect = 0.37
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 494 ENKSTLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQAPTALQ 553
EN LE +E K P + ++ + EK T +KE E K P PT +
Sbjct: 16 ENLEALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKYGKISPHEWPPPPPT--E 73
Query: 554 EFMANHSELIEEIKSEFEIKSVEL 577
E H ++++ + E+K+ ++
Sbjct: 74 EHKVVHQ--LDDVTRDSEVKATQI 95
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 28.5 bits (62), Expect = 0.49
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 508 PYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQ 547
P KPKP + E K +E K++E +E KE + + K+
Sbjct: 109 PKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKE 148
Score = 26.6 bits (57), Expect = 1.8
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 2/44 (4%)
Query: 508 PYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQ-PKQAPT 550
P KPKP + E K++E KE+ +E +E +E PKQ T
Sbjct: 115 PEPKPKPEPK-VEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTT 157
Score = 26.2 bits (56), Expect = 2.4
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 488 ALKNHSENKSTLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQ 547
++ +S K+ E K + P KPK KE +KE + +TK + +PK
Sbjct: 57 SINTNSNTKTNAESAKPKEEPKEKPK-----------KEEPKKEEPKKETKPKPKPKPKP 105
Query: 548 AP 549
P
Sbjct: 106 KP 107
Score = 24.3 bits (51), Expect = 9.2
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 490 KNHSENKSTLEVVKELKFPYSKPKP-TTETTAETKEKETKEKEIQENDTKEIQEVQP 545
K + + E KE S PK TT+ + K+K+ + + E T E Q P
Sbjct: 130 KEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYNP 186
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 28.5 bits (62), Expect = 0.49
Identities = 18/66 (27%), Positives = 35/66 (52%), Gaps = 11/66 (16%)
Query: 490 KNHSENKSTLEVVKELKFPYSKPKPTTETTAETKEK-ETKEKEIQENDTKEIQEVQPKQA 548
+N S NK+ E++K+ + E + E+ E +++ Q N K+I+E+ KQA
Sbjct: 191 QNLSNNKNLSELIKQQR----------ENELDQMERLEDMQEQAQANALKQIEELNKKQA 240
Query: 549 PTALQE 554
A+++
Sbjct: 241 EEAVRQ 246
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 28.1 bits (61), Expect = 0.63
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Query: 523 KEKETKEKEIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEIKSEFEIKSVELL 578
+E TKE + N T +E PK AP L+E A EL EE + +I LL
Sbjct: 26 EENITKENMTETNTT---EENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLL 78
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 27.7 bits (60), Expect = 0.83
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 327 LKMKFKEALKFKALDDAILELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERI 382
L +F + + K L + + L+ + FNQN +++Y+ K+ES ++ + +E +
Sbjct: 933 LSAQFLQIITLKILANQLGILKLSNFNQNITLTYSDEKKESLKAPSKDDNDILETL 988
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 27.7 bits (60), Expect = 0.83
Identities = 15/62 (24%), Positives = 31/62 (49%)
Query: 481 KGESIKIALKNHSENKSTLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQENDTKEI 540
+ ++ I+ +N ++ ++ KE K + K + +E E + +E QE D KE+
Sbjct: 470 ESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKEL 529
Query: 541 QE 542
+E
Sbjct: 530 EE 531
Score = 25.4 bits (54), Expect = 4.1
Identities = 13/49 (26%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 346 ELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKLEKK 394
E + TP ++ + APK SK EKR E+ ++ + ++ + E++
Sbjct: 470 ESKNTPISKENAAKKEAPKPSSKE-EKRRLKEEKKKAKAEQRAREFEQR 517
>ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 309
Score = 27.3 bits (59), Expect = 1.1
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 237 EMLGAIDRSVLEDFFQSLINQDEARLKERYAILENYETESVLEEMM-------LFLKAKL 289
E+LG +L +F+Q+L+ +A +++ N ET S++++ + L +
Sbjct: 80 EVLGFDIFDILVNFYQALLKDKQALYDNLFSLEPNQETYSIIKQELKAHYKKECVLDPLI 139
Query: 290 LSPDFY 295
L+ D+Y
Sbjct: 140 LARDYY 145
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 26.9 bits (58), Expect = 1.4
Identities = 11/47 (23%), Positives = 26/47 (54%)
Query: 508 PYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQAPTALQE 554
P P T ET++ + ++ +I+E T++ QE++ + A+++
Sbjct: 235 PIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKK 281
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 26.9 bits (58), Expect = 1.4
Identities = 33/153 (21%), Positives = 65/153 (41%), Gaps = 15/153 (9%)
Query: 359 SYNAPKQESKNIEKR-EKIEQIERIEGTEKREKLEKKENAETPQTPMLSAKDRIFHNLFK 417
+Y+ KQ K++EK +K E++E+ K K E ++ S KD IF + K
Sbjct: 607 NYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEA-KSQANSQKDEIFALINK 665
Query: 418 Q----VQTLVYERNYE-LGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLR--ERFKI 470
+ + + Y +N + + + I+ D + + +++ K+K+ + E K
Sbjct: 666 EANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKA 725
Query: 471 VKSIVDGV------FGKGESIKIALKNHSENKS 497
+K V + K E++ AL K+
Sbjct: 726 LKGSVKDLGINPEWISKVENLNAALNEFKNGKN 758
>ref|NP_223204.1| cag island protein [Helicobacter pylori J99]
Length = 306
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 533 QENDTKEIQEVQPKQAPTALQEFMANHSELIEEIKSEFE 571
Q +D KEI + + + A AL+E + N +E+I+ E
Sbjct: 50 QRHDDKEITKEEKEFATNALREKLRNDRARVEQIQKNIE 88
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 26.9 bits (58), Expect = 1.4
Identities = 48/202 (23%), Positives = 77/202 (37%), Gaps = 42/202 (20%)
Query: 366 ESKNIEKREKIEQIERIEGT-------------EKREKLEKKENAETPQTPMLSAKDRIF 412
ESK E +E + Q+ E + EK + L KKE + L+AK+ F
Sbjct: 31 ESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAF 90
Query: 413 HNL----FKQVQTLVYERNYELGAVFE-KNIRFIDFDSQTK----TLTWESLATDKDKEL 463
L K+++ L+ E L + + K+ + + S+ K L E+L T E+
Sbjct: 91 KTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEI 150
Query: 464 LRERFKIVKSIVDGVFGKGESIKIAL------KNHSENKSTLEVVKELKFPYSKPKPTTE 517
L + + + K + K A K ENK E K TT+
Sbjct: 151 L---MALKPQELGKILAKMDPKKAAALTELWQKPPKENKENKESQK-----------TTD 196
Query: 518 TTAETKEKETKEKEIQENDTKE 539
T T KE +++ + KE
Sbjct: 197 PTPPTPPTPPKEPTLKDPNVKE 218
>ref|NP_222859.1| putative [Helicobacter pylori J99]
Length = 193
Score = 26.9 bits (58), Expect = 1.4
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 134 FNALLKTLEEPPSHVKF---LLATTDALKLPATILSRTQHFRFKKIPENSVISHLKTILE 190
FNA+LKT E S+ +F L T++ K P KKI EN + + L ILE
Sbjct: 51 FNAMLKTYENFKSNYRFSVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLNNAL--ILE 108
Query: 191 KEQVSY 196
K Y
Sbjct: 109 KSNTLY 114
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 26.6 bits (57), Expect = 1.8
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 277 VLEEMMLFLK--AKLLSPDFYSILLIE----RFFKIIMSSLSLLKEGANASFVLLLLKMK 330
VL+E ++ L + L PD L R +I ++L L K+ A F + +
Sbjct: 131 VLKEKVITLANVSSLFPPDLIKALEDNDDPNRIADLIAAALHLKKDQAYFLFANNNTEQR 190
Query: 331 FKEALKFKALDDAILELEQTPFNQNPSISYNAPKQESKNIEK--REKIEQIERIEGTEKR 388
+ + D ++E +T Q S K E N E +E+++QI++ GT+K+
Sbjct: 191 LLDLI------DIVIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKELGTDKQ 244
Query: 389 EKLEKKENAETPQTPMLSAKDRIFHNLFKQVQTL 422
+ + + ++ K+ F + KQ+ L
Sbjct: 245 RDEDLNQYYQKLESIKPFLKEEAFKEIKKQIDRL 278
>ref|NP_223611.1| putative [Helicobacter pylori J99]
Length = 243
Score = 26.6 bits (57), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (61%)
Query: 302 RFFKIIMSSLSLLKEGANASFVLLLLKMK 330
RF +I L L+KE AN F +LL K+K
Sbjct: 116 RFDGLIEKGLMLVKENANIEFDVLLEKIK 144
>ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE [Helicobacter pylori
J99]
Length = 257
Score = 26.2 bits (56), Expect = 2.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 303 FFKIIMSSL--SLLKEGANASFVLLLLKMKFKEALKF--KALDDAILELEQTP 351
F ++ SSL + ++EG NA L L+KM FK K K + I+E TP
Sbjct: 172 FLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTP 224
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 26.2 bits (56), Expect = 2.4
Identities = 24/72 (33%), Positives = 36/72 (49%), Gaps = 16/72 (22%)
Query: 509 YSKPKPTTETTAETK----EKETKEKE------IQENDTKEIQEVQPKQAPTALQEFMAN 558
++KP TTE E K EKE E+E +EN TKE E+Q KQ + N
Sbjct: 26 HTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTELQ-KQV-----NELKN 79
Query: 559 HSELIEEIKSEF 570
+++E K+++
Sbjct: 80 SKQVLENEKADW 91
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 25.8 bits (55), Expect = 3.2
Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 16/78 (20%)
Query: 332 KEALKFKALDDAILELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKL 391
+E L FK L D + + +SY + E K K + I+R+ ++R K
Sbjct: 157 EEDLDFKGLLDIL---------EKDFLSYQHKELEHK------KNQIIKRLNAQKERLK- 200
Query: 392 EKKENAETPQTPMLSAKD 409
EK E E P+T L AK+
Sbjct: 201 EKLEKLEDPKTLQLEAKE 218
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 25.8 bits (55), Expect = 3.2
Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 36/212 (16%)
Query: 211 SLRDTITLLEQAINYCDNAITESKVAEML-----GAIDRSVLEDFFQSLINQDEARLKER 265
+L D+ +L + NY ++K A+++ G I+ S ++ Q+++N A+ K+
Sbjct: 19 NLVDSEVMLGKLYNY--TLTNDAKKADVILINTCGFIE-SAKQESIQTILNA--AKDKKE 73
Query: 266 YAIL-------ENYETE--SVLEEMMLF-----------LKAKLLSPDFYSILLIERFFK 305
AIL E Y+ E ++ E+ +F L AK + + L E +
Sbjct: 74 GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKKQNQFSEQVFLSEHYNA 133
Query: 306 IIMSSLSL-----LKEGANASFVLLLLKMKFKEALKFKALDDAILELEQTPFNQNPSISY 360
I++ S+ + EG N + FK L+ + LD + E+E +++
Sbjct: 134 RIITGSSVHAYVKISEGCNQKCSFCAIP-SFKGKLQSRELDSILKEVEDLALKGYKDMTF 192
Query: 361 NAPKQESKNIEKREKIEQIERIEGTEKREKLE 392
A S +K +K I+ I +K++ L+
Sbjct: 193 IAQDSSSFLYDKGQKDGLIQLIRAIDKQQALK 224
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.8 bits (55), Expect = 3.2
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 491 NHSENKSTLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQAPT 550
+++EN E K P K E+ E +KE E+ I+E +T+ P +
Sbjct: 293 SNTENHDKTENHKTPNHPI-KEDDLQESPQENPQKENIEENIEEKETQNAPSFSPLTLTS 351
Query: 551 ALQEFMANHSELIEEIKSEFEIKSVE 576
A + M +EI + V+
Sbjct: 352 AKKPVMVKELSENKEILDGLDYGEVQ 377
>ref|NP_222885.1| putative restriction enzyme [Helicobacter pylori J99]
Length = 448
Score = 25.8 bits (55), Expect = 3.2
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 7/46 (15%)
Query: 227 DNAITESKVAEMLGAIDRSVLEDFFQSLINQDEARLKERYAILENY 272
DN I +K +I + +LE FF NQDE + IL NY
Sbjct: 9 DNQILHNKRI----SIKKGILEHFFDKANNQDEVDMS---GILSNY 47
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 25.4 bits (54), Expect = 4.1
Identities = 19/80 (23%), Positives = 37/80 (45%), Gaps = 5/80 (6%)
Query: 497 STLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQAPTALQEFM 556
ST ++ K+++ K + +E++ E+E Q+ + EI+ Q +Q +
Sbjct: 119 STGDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIEL 178
Query: 557 ANHSELIEEIKSEFEIKSVE 576
AN +IK+E E + E
Sbjct: 179 AN-----SQIKAEQERQKTE 193
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 25.0 bits (53), Expect = 5.4
Identities = 14/38 (36%), Positives = 25/38 (64%), Gaps = 1/38 (2%)
Query: 529 EKEIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEI 566
+KE++ +T EI+E + + TAL + + N SEL+ E+
Sbjct: 52 QKEMKPLNT-EIKEQEERSLKTALFKALENFSELLIEV 88
>ref|NP_223501.1| HYDROXYETHYLTHIAZOLE KINASE [Helicobacter pylori J99]
Length = 259
Score = 25.0 bits (53), Expect = 5.4
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 133 AFNALLKTLEEPPSHVKFLLATTDALKLP 161
AF+A K LE S+ FL DAL LP
Sbjct: 219 AFSAQKKALENNGSNGSFLFYFLDALSLP 247
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 25.0 bits (53), Expect = 5.4
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 338 KALDDAILELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKLEK 393
++ D I +LE++ F++ +N K+ + IE+ + + I G E +++ K
Sbjct: 122 RSTDKFISDLEKSAFSKINQFEFNFRKEMHERIERGIGNNECKEIFGNELKQRKTK 177
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 25.0 bits (53), Expect = 5.4
Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 100 DDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDA-L 158
D+VR L E+T+ S I I+ + T+E+ +K +EE + ++ L + T+ L
Sbjct: 587 DEVRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALRSVTEGNL 646
Query: 159 KLPATILSRTQ 169
K+ + L +Q
Sbjct: 647 KIASDSLEISQ 657
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 24.6 bits (52), Expect = 7.0
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 364 KQESKNIEKREKIEQIERIEGTEKREKLEKKENA--------ETPQTPMLSAK 408
KQE K K+E ++I++ E+ ++ + K+N+ +TP TP++ K
Sbjct: 103 KQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKK 155
>ref|NP_223010.1| putative [Helicobacter pylori J99]
Length = 184
Score = 24.6 bits (52), Expect = 7.0
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 438 IRFIDFDSQTKTLTWESLATDKDKELLRERFKIV-----------KSIVDGVFGKGESIK 486
++ ++ D + LTW + T K K + F+ + K++++G +S+K
Sbjct: 15 LQAVNLDLSSAKLTWTAFKT-KAKTPVNGSFESITYKLGKSQDSLKTLLEGANASMDSLK 73
Query: 487 IALKNHSENKSTLE 500
+ L + ++NK+ E
Sbjct: 74 VNLGDDTKNKNVKE 87
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 24.6 bits (52), Expect = 7.0
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 164 ILSRTQHFRFKKIPENSVISHLK----TILEKEQVSYETSALEKLAHSGQGSLRDTI 216
I+ F KKIP+++ I+H+ ++L + +S+ S E L + L+ T+
Sbjct: 394 IICLLAQFSHKKIPKDNAIAHMSAMMPSLLTLQWLSFILSLAENLCLTDSHHLKYTL 450
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 24.6 bits (52), Expect = 7.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 531 EIQENDTKEIQEVQPKQAPTALQEFMANHSELIEEIKSE 569
+ + D K++ E K AP+ + EF ++ +E +K E
Sbjct: 23 DFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEE 61
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 24.6 bits (52), Expect = 7.0
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 348 EQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKLEKKENAET----PQTP 403
+ T +Q IS ++ +S+ IEK K ++ + E K+E +E + +A++ Q
Sbjct: 485 KNTGKSQEIKISGSSGLSDSE-IEKMVKDAELHKEEDARKKEVIEARNHADSLAHQTQKS 543
Query: 404 MLSAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLT 451
+ K + N ++Q + N + N + + +TK LT
Sbjct: 544 LDEHKTNLNENDANEIQNAI---NALKDCIKNDNATKAELEDKTKALT 588
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.6 bits (52), Expect = 7.0
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 328 KMKFKEALKFKALDDAILELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEK 387
K+K E+ + K+L++ +L Q N N ++ K + E +I +++ +EG E
Sbjct: 217 KLKQLESAQ-KSLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEA 275
Query: 388 REKLE 392
+ L+
Sbjct: 276 KSDLD 280
>ref|NP_223123.1| putative [Helicobacter pylori J99]
Length = 409
Score = 24.3 bits (51), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 132 EAFNALLKTLEEPPSHVKFLLATTDAL--KLPATILSRTQHFRFKK 175
EAF L++LEE P K L T + L + +L+ + RF +
Sbjct: 9 EAFKLSLESLEEDPFETKETLETLETLIKQTSVVLLAAGESKRFSR 54
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 24.3 bits (51), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 464 LRERFKIVKSIVDGVFGKGESIKIALKNHSE 494
+RER K V GVF +G+ ++ ALK E
Sbjct: 493 IRERMKEVMDEKVGVFREGKKLEEALKELQE 523
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.132 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,286
Number of Sequences: 1491
Number of extensions: 27890
Number of successful extensions: 209
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 78
length of query: 578
length of database: 494,079
effective HSP length: 83
effective length of query: 495
effective length of database: 370,326
effective search space: 183311370
effective search space used: 183311370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)