BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645341|ref|NP_207513.1| hypothetical protein
[Helicobacter pylori 26695]
(109 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223375.1| putative [Helicobacter pylori J99] 149 1e-38
ref|NP_222839.1| putative [Helicobacter pylori J99] 59 3e-11
ref|NP_223376.1| putative [Helicobacter pylori J99] 52 3e-09
ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 24 1.1
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 24 1.1
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 23 1.5
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 22 3.2
ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylor... 22 4.2
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 22 5.5
ref|NP_223220.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_222748.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 21 7.2
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 21 7.2
ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helic... 21 7.2
ref|NP_223588.1| putative outer membrane protein [Helicobac... 21 9.4
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 149 bits (377), Expect = 1e-38
Identities = 79/82 (96%), Positives = 80/82 (97%)
Query: 22 MRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNAE 81
MRRSLAF LLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLK L+AE
Sbjct: 1 MRRSLAFCLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSAE 60
Query: 82 DAKKFRANFSRIARKNLSKMSE 103
DAKKFRANFSRIARKNLSKMSE
Sbjct: 61 DAKKFRANFSRIARKNLSKMSE 82
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 58.9 bits (141), Expect = 3e-11
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 24 RSLAFYLL---ALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNA 80
+ LAF LL LGL L A DF + N++LL+ AG + +E ++R EV+KRL+ +
Sbjct: 2 KKLAFSLLFTGTFLGL-FLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKE 60
Query: 81 EDAKKFRANFSRIARKNLSKMSE 103
E+ +K++A+F + KNL+ +S+
Sbjct: 61 EERQKYKADFKKAMDKNLASLSQ 83
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 52.4 bits (124), Expect = 3e-09
Identities = 25/81 (30%), Positives = 43/81 (52%)
Query: 22 MRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNAE 81
M+++L + L L A+DFS+ +E+L K+AG + + +DY E+ KR++ + +
Sbjct: 1 MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED 60
Query: 82 DAKKFRANFSRIARKNLSKMS 102
K F A KN KM+
Sbjct: 61 KRKAFHKQLHEYATKNTDKMT 81
>ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 345
Score = 23.9 bits (50), Expect = 1.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 50 EELLKLAGTLPSNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEGF 105
+E LKLA LP N Y + + K L K +F + R+ L EGF
Sbjct: 168 KEELKLAKELPINHLSAYALSIEKN-TNLEKNAKKPSSVDFDNVVREVL----EGF 218
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 23.9 bits (50), Expect = 1.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 87 RANFSRIARKNLSKMSEGFQ 106
R NFS+IA + S+ S+G +
Sbjct: 642 RTNFSKIAHQKRSRFSQGIE 661
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 23.5 bits (49), Expect = 1.5
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 4/43 (9%)
Query: 49 NEELLKLAGTLPSNEAID----YRMEVSKRLKTLNAEDAKKFR 87
NE LK+ G PS + ID Y M++ + D+ K R
Sbjct: 195 NEVALKMRGNFPSIDFIDKFPRYLMQLIPEFDNIRLLDSSKTR 237
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 22.3 bits (46), Expect = 3.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 42 RDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTL 78
RD Q ++L L T N+ D R E K LKTL
Sbjct: 219 RDMVQNHLLQVLSLIATDLPNDLKDLRQEKIKVLKTL 255
>ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylori J99]
Length = 336
Score = 21.9 bits (45), Expect = 4.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 70 EVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSE 103
EV K K A +A + + +R+A+ L+KM E
Sbjct: 301 EVLKAYKNHRAYNAIELKDEVARLAKLALTKMME 334
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 21.6 bits (44), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 13 KNLDNKGLGMRRSLAFYLLALL 34
K L+NKG+G + A YL L+
Sbjct: 475 KLLENKGIGRPSTYASYLPTLV 496
>ref|NP_223220.1| putative [Helicobacter pylori J99]
Length = 273
Score = 21.6 bits (44), Expect = 5.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 42 RDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLK 76
+DF ++ + LKL TL N + + + LK
Sbjct: 48 KDFYEMGRLDSLKLLNTLKENGLLSFNFDKPSVLK 82
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 21.6 bits (44), Expect = 5.5
Identities = 9/40 (22%), Positives = 20/40 (49%)
Query: 58 TLPSNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKN 97
T +++ Y ++ KRL +K F+A+++ + N
Sbjct: 386 TFDADDIEKYELQAIKRLDLQRCAKSKSFKASYNHNIKIN 425
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 21.2 bits (43), Expect = 7.2
Identities = 13/53 (24%), Positives = 25/53 (46%)
Query: 33 LLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNAEDAKK 85
LLGL+ + DF+ E L+ A + A + + ++K L++E +
Sbjct: 665 LLGLKNILKEDFNASVELEDLEKASPIEKFVAEKLKSDYENKMKALDSEQRSR 717
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 21.2 bits (43), Expect = 7.2
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 64 AIDYRMEVSKRLKTLNAEDAKKFRANFS 91
A+D + LKT+N ED + FS
Sbjct: 323 ALDPKKLFGDNLKTINLEDLRTILHEFS 350
>ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
Length = 336
Score = 21.2 bits (43), Expect = 7.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 42 RDFSQLKNEELLKLAGTL 59
RDF+ +KN L+ L+ TL
Sbjct: 229 RDFALVKNSSLMDLSITL 246
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 20.8 bits (42), Expect = 9.4
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 64 AIDYRMEVSKRLKTLNAEDAKKFRANFS 91
A+D + LKT+N ED + FS
Sbjct: 334 ALDPKKLFGNDLKTINLEDLRTILHEFS 361
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,706
Number of Sequences: 1491
Number of extensions: 3980
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 15
length of query: 109
length of database: 494,079
effective HSP length: 66
effective length of query: 43
effective length of database: 395,673
effective search space: 17013939
effective search space used: 17013939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)