BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645342|ref|NP_207514.1| hypothetical protein
[Helicobacter pylori 26695]
(53 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223375.1| putative [Helicobacter pylori J99] 109 1e-26
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 0.14
ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helico... 23 0.92
ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter... 23 1.6
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 22 2.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 3.5
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 21 6.0
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 21 6.0
ref|NP_223644.1| putative [Helicobacter pylori J99] 20 7.8
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 109 bits (272), Expect = 1e-26
Identities = 52/53 (98%), Positives = 52/53 (98%)
Query: 1 MREEVRKELEEKTKGLSDEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK 53
MREEVRKELEEKTKGLS EEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK
Sbjct: 88 MREEVRKELEEKTKGLSAEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK 140
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 26.2 bits (56), Expect = 0.14
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 8 ELEEKTKGLSDEEIKAKGLNVSVCS 32
E EEKTK +SD + KAK N S S
Sbjct: 343 EKEEKTKEISDNKEKAKETNSSAQS 367
>ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 130
Score = 23.5 bits (49), Expect = 0.92
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 10 EEKTKGLSDEEIKAKGLNVSVCSGDTRKVW 39
E K KG+ K G+ V VC + + +W
Sbjct: 77 EGKLKGVDYSHCKGCGVCVDVCPTNPKSLW 106
>ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 326
Score = 22.7 bits (47), Expect = 1.6
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 7 KELEEKTKGLSDEEIKAKGLNVSVCSGDTRKVWCRAVKKK 46
K ++E+ + +SD+E+KA V C + + RA +K
Sbjct: 283 KPIQERYQEISDDEVKA----VLNCGAEKARPLARATYQK 318
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 22.3 bits (46), Expect = 2.1
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 8 ELEEKTKG----LSDEEIKAKG 25
EL+EK K L DEE++A+G
Sbjct: 668 ELQEKYKARNMRLEDEEVRARG 689
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.6 bits (44), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 9 LEEKTKGLSDEEIKA 23
L+EK K L DEE+ A
Sbjct: 266 LKEKYKNLDDEEVMA 280
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 20.8 bits (42), Expect = 6.0
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 4/21 (19%)
Query: 3 EEVRKELEEKTKGLSDEEIKA 23
+EV+KE +EK K EE+KA
Sbjct: 149 KEVKKENKEKAK----EEVKA 165
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 20.8 bits (42), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 14 KGLSDE--EIKAKGLNVSVCSGDTRK 37
KG+ + +IK G+N + SGD R+
Sbjct: 564 KGVKEHIAQIKNLGINTFLLSGDNRE 589
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 20.4 bits (41), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 2 REEVRKELEEKTKGLSDEEIKAKGLNVSV 30
RE KE+E T S +E+K +GL + +
Sbjct: 155 REFFIKEIEILTHTNSLKELKEQGLEIQL 183
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.310 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,054
Number of Sequences: 1491
Number of extensions: 1629
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 53
length of database: 494,079
effective HSP length: 29
effective length of query: 24
effective length of database: 450,840
effective search space: 10820160
effective search space used: 10820160
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 41 (20.4 bits)