BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645343|ref|NP_207515.1| hypothetical protein
[Helicobacter pylori 26695]
(152 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223376.1| putative [Helicobacter pylori J99] 315 3e-88
ref|NP_222839.1| putative [Helicobacter pylori J99] 67 2e-13
ref|NP_223375.1| putative [Helicobacter pylori J99] 61 1e-11
ref|NP_224038.1| putative histidine-rich metal-binding prot... 28 0.11
ref|NP_223645.1| putative [Helicobacter pylori J99] 28 0.14
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 0.25
ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99] 27 0.25
ref|NP_222840.1| putative [Helicobacter pylori J99] 27 0.32
ref|NP_223659.1| putative [Helicobacter pylori J99] 25 0.72
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 25 0.72
ref|NP_223830.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_224095.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 23 2.7
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 2.7
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223433.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223646.1| putative [Helicobacter pylori J99] 23 4.6
ref|NP_223290.1| putative [Helicobacter pylori J99] 23 4.6
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 23 4.6
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 23 4.6
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 22 6.1
ref|NP_223623.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223523.1| CDP-DIACYLGLYCEROL PYROPHOSPHATASE [Helico... 22 6.1
ref|NP_223162.1| putative paralog of HpaA [Helicobacter pyl... 22 6.1
ref|NP_222758.1| DNA transformation compentancy [Helicobact... 22 6.1
ref|NP_223721.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 22 7.9
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 7.9
ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicoba... 22 7.9
ref|NP_222912.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_222827.1| putative [Helicobacter pylori J99] 22 7.9
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 315 bits (807), Expect = 3e-88
Identities = 150/152 (98%), Positives = 151/152 (98%)
Query: 1 MKKALKILSVSALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED 60
MKKALKILSV ALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED
Sbjct: 1 MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED 60
Query: 61 KRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKKGNMEDMDDDFGLRSCKHGKKHK 120
KRKAFHKQLHEYATKNTDKMTVADFEARQKA+KEALKKGNMEDMDDDFGLRSCKHGKKHK
Sbjct: 61 KRKAFHKQLHEYATKNTDKMTVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHK 120
Query: 121 HDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH 152
HDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH
Sbjct: 121 HDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH 152
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 67.4 bits (163), Expect = 2e-13
Identities = 43/136 (31%), Positives = 68/136 (49%), Gaps = 7/136 (5%)
Query: 2 KKALKILSVSALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDK 61
K A +L L + LNA DF ++ L + AG VAP ++ ++ E+ KR+E M E++
Sbjct: 3 KLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEE 62
Query: 62 RKAFHKQLHEYATKNTDKMTVADFEARQKAVKEAL--KKGNM---EDMDDDFGLRSCK-H 115
R+ + + KN ++ D R+K + E + KK M E ++ L C
Sbjct: 63 RQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCACE 122
Query: 116 GKKHKHDKHGKKHGKK 131
G H H+K G+K GKK
Sbjct: 123 GPFHDHEKKGQK-GKK 137
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 61.2 bits (147), Expect = 1e-11
Identities = 29/98 (29%), Positives = 55/98 (55%)
Query: 1 MKKALKILSVSALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED 60
M+++L ++ L L A+DFS+ +E+L K+AG + + +DY E+ KR++ + +
Sbjct: 1 MRRSLAFCLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSAE 60
Query: 61 KRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKK 98
K F A KN KM+ DF+ ++ V++ L++
Sbjct: 61 DAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEE 98
>ref|NP_224038.1| putative histidine-rich metal-binding protein [Helicobacter pylori
J99]
Length = 60
Score = 28.1 bits (61), Expect = 0.11
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 115 HGKKHKHDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH 152
H H H H HG +H H H+ SD H
Sbjct: 11 HHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSH 48
Score = 26.6 bits (57), Expect = 0.32
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 101 MEDMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDK-----DHDHHDED 147
M ++ G H H H HG +H H H ++ HH E+
Sbjct: 1 MAHHEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEE 52
Score = 25.8 bits (55), Expect = 0.55
Identities = 11/34 (32%), Positives = 14/34 (40%), Gaps = 5/34 (14%)
Query: 124 HGKKHGKKHDKDHDDKDH-----DHHDEDHSDKH 152
H ++HG H H H +HH HS H
Sbjct: 4 HEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHH 37
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 27.7 bits (60), Expect = 0.14
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 25 KTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVAD 84
+T+ E + K + +D ++ LK+ +EK+P+D + +HK T TD + +
Sbjct: 838 ETNGEQIYKYDLQALEDESLDLSQALKQAIEKLPKDVYQ-YHK-----TTLKTDVLIIDS 891
Query: 85 FEARQKAVKEALK 97
R + V++ +K
Sbjct: 892 SNERYQEVQKLIK 904
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 26.9 bits (58), Expect = 0.25
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 72 YATKNTDKMTVADFEARQKAVKEALKKGN 100
+ TK+TD+ T+A FE+ + + E K+ N
Sbjct: 129 FNTKSTDETTIALFESVSQYINEGSKRAN 157
>ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99]
Length = 118
Score = 26.9 bits (58), Expect = 0.25
Identities = 15/43 (34%), Positives = 19/43 (43%), Gaps = 9/43 (20%)
Query: 101 MEDMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDKDHDH 143
+ED+ G SC H H H KH K+H+ HDH
Sbjct: 82 LEDILGIVGSGSCCHTGNHDH---------KHAKEHEACCHDH 115
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 26.6 bits (57), Expect = 0.32
Identities = 14/73 (19%), Positives = 31/73 (42%)
Query: 18 LNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNT 77
+++ +S+ DL M ++ E + EK P+ KR+ K+ + A +
Sbjct: 213 ISSSKTQNSSNPDLDPMTNANTLKETASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQE 272
Query: 78 DKMTVADFEARQK 90
+ ++D +K
Sbjct: 273 FEKQISDSSKSEK 285
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 25.4 bits (54), Expect = 0.72
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 69 LHEYATKNTDKMT--VADFEARQKAVKEALKKGNMEDMDDDFGLRSCKHGKKHKHDKHGK 126
L Y N +K+ D + QK ++ K+ N ++ +FG + K H K
Sbjct: 576 LTHYDNLNLEKVLEHAKDTKLEQKEIQAITKEPNNDEPWIEFGKKEQARAKAHYQAMLEK 635
Query: 127 KHGKKHDKDHDDKDHDHHDEDHSDKH 152
+ K+ K + H + +D H
Sbjct: 636 EKAKELAKQQANTLHSNELDDDPKAH 661
Score = 24.3 bits (51), Expect = 1.6
Identities = 26/94 (27%), Positives = 36/94 (37%), Gaps = 14/94 (14%)
Query: 18 LNAKDFSKTSDEDLAK----MAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYA 73
L D K +DL K + + +PQD D K L+K + +DK KA
Sbjct: 231 LKELDNIKLQLQDLEKEEKALEQIKSPQDEWDLNKALQKEYLQELKDKNKA--------- 281
Query: 74 TKNTDKMTVADFEARQKAVKEALKKGNMEDMDDD 107
K D +QK K + N +D DD
Sbjct: 282 -KALDIQNNHSTPLKQKISKFKIALFNHKDTSDD 314
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 25.4 bits (54), Expect = 0.72
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 107 DFGLRSCKHGKKHKHDKHGKKHG 129
D LR ++G H+H+K G HG
Sbjct: 326 DLPLRFYEYGVVHRHEKSGVLHG 348
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 24.6 bits (52), Expect = 1.2
Identities = 30/146 (20%), Positives = 59/146 (39%), Gaps = 13/146 (8%)
Query: 4 ALKILSVSALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRK 63
A+ + +++A+L A D SK K A ++ D K +E E+++
Sbjct: 79 AIGVTAITAMLMNVCFADDQSKKEVAQAQKEA-----ENARDRAN--KSGIELEQEEQKT 131
Query: 64 AFHKQLHEYATKNTDKMTVADFEARQKAVKEALKKGNMEDMDDDFGLRSCKHGKKHKHDK 123
KQ E + T++ + +QK +E K N+E + K ++ + +
Sbjct: 132 EQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN------QIKVEQEQQKTE 185
Query: 124 HGKKHGKKHDKDHDDKDHDHHDEDHS 149
K+ KD +K + E+H+
Sbjct: 186 QEKQKTNNTQKDLVNKAEQNCQENHN 211
>ref|NP_224095.1| putative [Helicobacter pylori J99]
Length = 148
Score = 23.9 bits (50), Expect = 2.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 14 LFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYA 73
+ + L A + K+ AK+A VV Y K+ + +EK P K F++ +E
Sbjct: 73 ILMLLIAPEMFKSGGWLHAKLALVVLLLIYHFYCKKCMRELEKDPTGKNARFYRVFNEIP 132
Query: 74 T 74
T
Sbjct: 133 T 133
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 23.5 bits (49), Expect = 2.7
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 3/60 (5%)
Query: 12 ALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHE 71
ALLF N + + K A + I+DY K L+K + ++K + K+L E
Sbjct: 28 ALLFKGANPSEILTLT---FTKKATAEMKERILDYLKILQKENLESEKEKSQNILKELEE 84
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.5 bits (49), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 48 KELKKRMEKMPEDKRKAFHKQL 69
KE K++ M EDK K F K+L
Sbjct: 1150 KEFGKQIASMLEDKTKDFAKEL 1171
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 3.6
Identities = 18/79 (22%), Positives = 35/79 (43%), Gaps = 8/79 (10%)
Query: 28 DEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFH--------KQLHEYATKNTDK 79
+ED+AK A ++I + E+K + EK K++ + L E KN +
Sbjct: 96 EEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVENEVKNIKE 155
Query: 80 MTVADFEARQKAVKEALKK 98
F+ +++ V++ K
Sbjct: 156 TQQIIFKKKEELVEKTEPK 174
>ref|NP_223433.1| putative [Helicobacter pylori J99]
Length = 227
Score = 23.1 bits (48), Expect = 3.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 41 QDIVDYTKELKKRMEKMPEDKRKAFHKQL 69
QDI++Y +++ + K + KAF+++L
Sbjct: 188 QDILNYLQKIYYTLGKKEQSGLKAFYREL 216
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 22.7 bits (47), Expect = 4.6
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 25 KTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVAD 84
KT +DLAKM+ + + + K+ ++ + +KR + + E K K
Sbjct: 53 KTLIDDLAKMSKDRNYKPA--FNPKSKEVLKNLNAEKRASLENEREEQGVKGNTKSHDEI 110
Query: 85 FEARQKAVKEALKKGN 100
A ++ +++ ++KG+
Sbjct: 111 EPATEQVIEKEIEKGD 126
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 22.7 bits (47), Expect = 4.6
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 69 LHEYATKNTDKMTVADFEARQKAVKEAL-KKGNMEDMDDDFGLR 111
L++Y T NTD + + AR + + + + G +D+ ++ R
Sbjct: 521 LNDYFTNNTDSWGIEEVRARSEYLADQFCQVGLFKDLPKEYRAR 564
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 22.7 bits (47), Expect = 4.6
Identities = 19/77 (24%), Positives = 34/77 (43%), Gaps = 3/77 (3%)
Query: 51 KKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKKG-NMEDMDDDFG 109
KK M+ K + + +TD + V + A ++ + ++ G N+ ++ +DF
Sbjct: 329 KKIMKIFKNQISKGIELNILTNSLSSTDAIVV--YGAWERYRNKLVRMGANVYEIRNDFF 386
Query: 110 LRSCKHGKKHKHDKHGK 126
R K KH HGK
Sbjct: 387 NRQIKGRFSTKHSLHGK 403
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 22.7 bits (47), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MKKALKILSVSALLFVALNAKDFSKTSDE 29
M+K L L L+F AL A DF + ++E
Sbjct: 1 MRKVLYALMGFLLVFSALKADDFLEEANE 29
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 22.3 bits (46), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 43 IVDYTKELKKRMEKMPEDKRK 63
+V TK + K+ E PE+KRK
Sbjct: 908 LVVETKGVDKKSELRPEEKRK 928
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 22.3 bits (46), Expect = 6.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 83 ADFEARQKAVKEALKKGNMEDMD 105
A+F ++ K KE +K G+M + D
Sbjct: 156 ANFYSQLKIAKEKVKAGSMSEKD 178
>ref|NP_223523.1| CDP-DIACYLGLYCEROL PYROPHOSPHATASE [Helicobacter pylori J99]
Length = 244
Score = 22.3 bits (46), Expect = 6.1
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 1 MKKA-LKILSVSALLFVALNAKD 22
MKKA L+ A++ V+LNAKD
Sbjct: 1 MKKAGFLFLAAMAIIVVSLNAKD 23
>ref|NP_223162.1| putative paralog of HpaA [Helicobacter pylori J99]
Length = 282
Score = 22.3 bits (46), Expect = 6.1
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 56 KMPEDKRKAFHKQLHEYATKNTDKMTVADF 85
K P D + Q HE T +++ +T DF
Sbjct: 38 KKPNDAKNQQPVQTHERMTTSSEHVTPLDF 67
>ref|NP_222758.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 376
Score = 22.3 bits (46), Expect = 6.1
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 76 NTDKMTVADFEARQKAVKEALKKGNMEDMD 105
NT+ A +A Q+ +K ALK N ++M+
Sbjct: 62 NTESSKDATIKALQEQLKAALKALNSKEMN 91
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 21.9 bits (45), Expect = 7.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 110 LRSCKHGKKHKHDKHGKKHGKKHDKDHDDK 139
L +CK K K D++ G + K+ +DK
Sbjct: 22 LSACKSNNKDKLDENLLSSGTQSSKELNDK 51
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 21.9 bits (45), Expect = 7.9
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 24 SKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKA 64
++ ED AK VAP T+ K K+P+ + KA
Sbjct: 216 AQKKQEDQAKPKQEVAPAKETPKTETPKTETRKVPKAETKA 256
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 21.9 bits (45), Expect = 7.9
Identities = 12/56 (21%), Positives = 23/56 (40%)
Query: 56 KMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKKGNMEDMDDDFGLR 111
+M E+ +K + + ++ DF+ K E L KG + + + LR
Sbjct: 66 EMQEENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLNKGMDDSLKANNALR 121
>ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
Length = 493
Score = 21.9 bits (45), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 86 EARQKAVKEALKKGNMEDMDDDFGLRSCKHGKK 118
EA QK + + GN++ M + L S G+K
Sbjct: 379 EANQKIIIDDSFNGNLKGMLEGIRLASLHQGRK 411
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 21.9 bits (45), Expect = 7.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 62 RKAFHKQLHEYATKN 76
RK F K L EYA KN
Sbjct: 661 RKEFRKFLKEYAHKN 675
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 21.9 bits (45), Expect = 7.9
Identities = 14/54 (25%), Positives = 24/54 (43%)
Query: 16 VALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQL 69
V +AKD + +A + V+ +VD+ LK R + + +KQL
Sbjct: 193 VGNDAKDALIGIKQHVANLPEVIKSPSLVDFVNALKNRDTAIIVSTGPSLNKQL 246
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,425
Number of Sequences: 1491
Number of extensions: 8165
Number of successful extensions: 63
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 36
length of query: 152
length of database: 494,079
effective HSP length: 70
effective length of query: 82
effective length of database: 389,709
effective search space: 31956138
effective search space used: 31956138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)