BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646200|ref|NP_207516.1| outer membrane protein
[Helicobacter pylori 26695]
(608 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 1043 0.0
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 972 0.0
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 407 e-115
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 387 e-109
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 385 e-108
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 382 e-107
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 382 e-107
ref|NP_223820.1| putative Outer membrane function [Helicoba... 352 1e-98
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 349 1e-97
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 268 4e-73
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 159 3e-40
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 156 1e-39
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 143 1e-35
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 131 4e-32
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 131 6e-32
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 129 2e-31
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 123 2e-29
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 105 4e-24
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 102 2e-23
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 102 3e-23
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 97 9e-22
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 97 2e-21
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 96 2e-21
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 96 3e-21
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 96 3e-21
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 94 1e-20
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 82 4e-17
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 79 4e-16
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 78 7e-16
ref|NP_223088.1| putative [Helicobacter pylori J99] 50 1e-07
ref|NP_223588.1| putative outer membrane protein [Helicobac... 49 3e-07
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 49 3e-07
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 49 3e-07
ref|NP_223725.1| putative outer membrane protein [Helicobac... 49 4e-07
ref|NP_224132.1| putative [Helicobacter pylori J99] 44 2e-05
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 43 3e-05
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 43 3e-05
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 37 0.002
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 29 0.30
ref|NP_222774.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 27 2.0
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 26 2.6
ref|NP_223759.1| putative [Helicobacter pylori J99] 26 3.3
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 26 3.3
ref|NP_223560.1| putative [Helicobacter pylori J99] 25 5.7
ref|NP_223550.1| putative [Helicobacter pylori J99] 25 5.7
ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter p... 25 5.7
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 5.7
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 25 5.7
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 24 9.7
ref|NP_223830.1| putative [Helicobacter pylori J99] 24 9.7
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 9.7
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 24 9.7
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 1043 bits (2697), Expect = 0.0
Identities = 521/608 (85%), Positives = 557/608 (90%), Gaps = 8/608 (1%)
Query: 1 MVKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE 60
MVKNTGELKNLN+KYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE
Sbjct: 39 MVKNTGELKNLNDKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE 98
Query: 61 TSPIYNTAQAVITSVLAFWSLYAGNATSFHVTGLNDGSNAPLGRIHQDGNCTGLQQCFMN 120
TSPIYNTAQAVITSVLAFWSLYAGNA SFHVTGLNDGSN+PLGRIH+DGNCTGLQQCFM+
Sbjct: 99 TSPIYNTAQAVITSVLAFWSLYAGNALSFHVTGLNDGSNSPLGRIHRDGNCTGLQQCFMS 158
Query: 121 KETYDKMKALAENLQKAQGNLCALSECPSDQLNGNNGNKTSMTKALETAQQLMDLIANTK 180
KETYDKMK LAENLQKAQGNLCALSEC S+Q +NG KTSMT AL+TAQQLMDLI TK
Sbjct: 159 KETYDKMKTLAENLQKAQGNLCALSECSSNQ---SNGGKTSMTTALQTAQQLMDLIEQTK 215
Query: 181 TAMMWKNIVIAGVTNRPGGAGAITSTGPVTDYAVFNNIKAMIPILQQAVTLSQSNHTLSA 240
+M+WKNIVIAGVTN+P GAGAITSTG VTDYAVFNNIKAM+PILQQA+TLSQSNHTLS
Sbjct: 216 VSMVWKNIVIAGVTNKPNGAGAITSTGHVTDYAVFNNIKAMLPILQQALTLSQSNHTLST 275
Query: 241 SLQAQATGSQTNPKFAKDIYTFAQNQKQVISYAQDIFNLFNSIPAEQYKYLEKAYLKIPN 300
LQA+A GSQTN +FAKDIY AQNQKQ++S A IFNLFNSIP +Q KYLE AYLK+P+
Sbjct: 276 QLQARAMGSQTNREFAKDIYALAQNQKQILSNASSIFNLFNSIPKDQLKYLENAYLKVPH 335
Query: 301 AGSTPTNPYRQVVNLNQEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIVTAYNDA 360
G TPTNPYRQ VNLN+E+ +++NV+ YGNR+D+ALSVA+DVYNLKSNQ EIVT YNDA
Sbjct: 336 LGKTPTNPYRQNVNLNKEINAVQDNVANYGNRLDSALSVAKDVYNLKSNQTEIVTTYNDA 395
Query: 361 KTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFK 420
K LSEEISKLP+NQVN +IV P D A YQINPEQQSNLNQALAAMSNNPFK
Sbjct: 396 KNLSEEISKLPYNQVNVTNIVMSPKDSTA-----GQYQINPEQQSNLNQALAAMSNNPFK 450
Query: 421 KVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIW 480
KVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIW
Sbjct: 451 KVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIW 510
Query: 481 TYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNA 540
TYGGGSDLLVN INDSITRKNNKLSVGLFGGIQLAGTTWLNSQY+NLTAFNNPYSAKVNA
Sbjct: 511 TYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNA 570
Query: 541 TNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSV 600
+NFQFLFNLGLRTNLATA+KKDSE SAQHG+ELGIKIPTI TNYYSFLGT+L+YRRLYSV
Sbjct: 571 SNFQFLFNLGLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFLGTKLEYRRLYSV 630
Query: 601 YLNYVFAY 608
YLNYVFAY
Sbjct: 631 YLNYVFAY 638
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 972 bits (2513), Expect = 0.0
Identities = 501/621 (80%), Positives = 542/621 (86%), Gaps = 21/621 (3%)
Query: 1 MVKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE 60
MVKNTGELKNLNEKYEQLSQ L Q+ASLK+SIQ ANNI+ VN++L+ LKSF +NN+ +
Sbjct: 39 MVKNTGELKNLNEKYEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTT 98
Query: 61 TSPIYNTAQAVITSVLAFWSLYAGNATSFHVTGLNDGS------NAPLGRIHQDGNCTGL 114
SPI+N QAVITSVL FWSLYAGN +F V + N P I Q NC+G+
Sbjct: 99 QSPIFNAVQAVITSVLGFWSLYAGNYLTFFVVNKDTQKPASVQGNPPFSTIVQ--NCSGI 156
Query: 115 QQCFMNKETYDKMKALAENLQKAQ-------GNLCALSECPSDQLNGNNGNKTSMTKALE 167
+ C MN+ TYDKMK LAE+LQ AQ NLCALS C + Q G N + T ++ AL
Sbjct: 157 ENCAMNQTTYDKMKKLAEDLQAAQQNATTKANNLCALSGCATTQ--GQNPSST-VSNALN 213
Query: 168 TAQQLMDLIANTKTAMMWKNIVIAGVTNRPGGAGAITSTGPVTDYAVFNNIKAMIPILQQ 227
AQQLMDLIANTKTAMMWKNIVIAGV+N +GAI STG T YAVFNNIKAMIPILQQ
Sbjct: 214 LAQQLMDLIANTKTAMMWKNIVIAGVSNV---SGAIDSTGYPTQYAVFNNIKAMIPILQQ 270
Query: 228 AVTLSQSNHTLSASLQAQATGSQTNPKFAKDIYTFAQNQKQVISYAQDIFNLFNSIPAEQ 287
AVTLSQSNHTLSASLQAQATGSQTNPKFAKDIY FAQNQKQVISYAQDIFNLF+SIP +Q
Sbjct: 271 AVTLSQSNHTLSASLQAQATGSQTNPKFAKDIYAFAQNQKQVISYAQDIFNLFSSIPKDQ 330
Query: 288 YKYLEKAYLKIPNAGSTPTNPYRQVVNLNQEVQTIKNNVSYYGNRVDAALSVARDVYNLK 347
Y+YLEKAYLKIPNAG TPTNPYRQ VNLNQE+QTI+NNVSYYGNRVDAALSVA+DVYNLK
Sbjct: 331 YRYLEKAYLKIPNAGKTPTNPYRQEVNLNQEIQTIQNNVSYYGNRVDAALSVAKDVYNLK 390
Query: 348 SNQAEIVTAYNDAKTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNL 407
SNQ EIVT YN+AK LS+EISKLP+NQVNTKDI+TLPYD+NAPAAGQ NYQINPEQQSNL
Sbjct: 391 SNQTEIVTTYNNAKNLSQEISKLPYNQVNTKDIITLPYDQNAPAAGQYNYQINPEQQSNL 450
Query: 408 NQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGY 467
+QALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGY
Sbjct: 451 SQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGY 510
Query: 468 IKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNL 527
IKSSFFNSSSDIWTYGGGSDLLVN INDSITRKNNKLSVGLFGGIQLAGTTWLNSQY+NL
Sbjct: 511 IKSSFFNSSSDIWTYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNL 570
Query: 528 TAFNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSF 587
TAFNNPYSAKVNA+NFQFLFNLGLRTNLATA+KKDSE SAQHG+ELGIKIPTI TNYYSF
Sbjct: 571 TAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSF 630
Query: 588 LGTQLQYRRLYSVYLNYVFAY 608
LGT+L+YRRLYSVYLNYVFAY
Sbjct: 631 LGTKLEYRRLYSVYLNYVFAY 651
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 407 bits (1045), Expect = e-115
Identities = 249/647 (38%), Positives = 354/647 (54%), Gaps = 53/647 (8%)
Query: 1 MVKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE 60
MVKNTGELK L++ YE LS L +L +++ A++ +N A+ +LK+ K
Sbjct: 36 MVKNTGELKKLSDTYENLSNLLTNFNNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKT 95
Query: 61 TSPIYNTAQAVITSVLAFWSLYAGN------------------------ATSFHVTGLND 96
SP Y + + + W++ A N + + ++TG N+
Sbjct: 96 NSPAYQAVYLALNAAVGLWNVIAYNVQCGPGNSGQQSVTFEGQPGHNSSSINCNLTGYNN 155
Query: 97 GSNAPLGRIHQDGNCTGLQQCFMNKETYDKMKALAENLQKAQGNLCALSECPSDQLNGNN 156
G + PL N L Q + + K + L A + + Q NG N
Sbjct: 156 GVSGPLSI----ENFKKLNQAYQTIQQALKQDSGFPVLDSAGKQVTITI---TTQTNGAN 208
Query: 157 GNKTSMTK-----ALETAQQLMDLIANTKTAMMWKNIVIAGVTNRPGG---AGAITSTGP 208
++T+ T A Q+ +I+ T W N P G AG +
Sbjct: 209 KSETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNHNQGQNGGAPWGLDTAGNVCQVFA 268
Query: 209 VTDYAVFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQTNPKFAKDIYTFAQNQKQ 268
AV + IK I+ QA +L+Q N+ + Q + + FA+++ AQ Q +
Sbjct: 269 TEFSAVTSMIKNAQEIVTQAQSLNQQNNQNAP--QDFNPYTSADRAFAQNMLNHAQAQAK 326
Query: 269 VISYAQDIFNLFNSIPAEQY-KYLEKAYL---KIPNAGSTPTNPYRQVVNLNQEVQTIKN 324
++ A + N+IP++ YL + +P+AG T + + + + N
Sbjct: 327 ILELADQMKKDLNTIPSQFITNYLAACHNGGGTLPDAGVTNNTWGAGCAYVEETITALNN 386
Query: 325 NVSYYGNRVDAALS---VARDVYNLKSNQAEIVTAYNDAKTLSEEISKLPHNQVNTKDIV 381
+++++G + + +AR + + + + + + YN T + P K+++
Sbjct: 387 SLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITTTASNTPNSPF----LKNLI 442
Query: 382 TLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQV 441
+ + N P Q+ YQ+N S L A + +NPF++VG+ISSQ NNGA+NG+GVQV
Sbjct: 443 SQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQV 502
Query: 442 GYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKN 501
GYKQFFGE +RWGLRYYGFFDYNH YIKSSFFNS+SD++TYG G+D+L N IND T KN
Sbjct: 503 GYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKTT-KN 561
Query: 502 NKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKK 561
+K+S G+FGGI LAGT+WLNSQYVNL FNN YSAK+N NFQFLFNLGLR NLA +KK
Sbjct: 562 SKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKK 621
Query: 562 DSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVFAY 608
S+H+AQHG+ELG+KIPTI TNYYS LGTQLQYRRLYSVYLNYVFAY
Sbjct: 622 ASDHAAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY 668
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 387 bits (993), Expect = e-109
Identities = 246/664 (37%), Positives = 363/664 (54%), Gaps = 68/664 (10%)
Query: 1 MVKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE 60
MVKNT +++L++ YE+L+ L + L I+ + + A+NNA +L + A N +K+
Sbjct: 39 MVKNTKGIQDLSDSYERLNNLLTNYSVLNALIRQSADPNAINNARGNLNASAKNLINDKK 98
Query: 61 TSPIYNTAQAVITSVLAFWSLYA---------------GNATSFHVTGLNDGSNAPLGRI 105
SP Y + + W + + G +FH T N +
Sbjct: 99 NSPAYQAVLLALNAAAGLWQVMSYAISPCGPGKDTSKNGGVQTFHNTPSNQWGGTTI--- 155
Query: 106 HQDGNCTGLQQ---CFMNKETYDKMKALAENLQKAQGN----LCALSECPSD---QLNGN 155
TG + ++ E Y K+ + +QKA G+ + ALS+ ++ +N N
Sbjct: 156 --TCGTTGYEPGPYSILSTENYAKINKAYQIIQKAFGSSGKDIPALSDTNTELKFTINKN 213
Query: 156 NGNKTSMTKALE--TAQQLMDLIANTKTAMMWKNIVIAGVTNRPGGAGAITS-------- 205
NGN + E T L+ T + N + N GGAG +S
Sbjct: 214 NGNTNTNNNGEEIVTKNNAQVLLEQASTIITTLNSACPWINN--GGAGGASSGSLWEGIY 271
Query: 206 -TGPVTDYAVFNN-IKAMIPILQQAVTLSQSNHTLSASLQAQA---TGSQTNP----KFA 256
G + +F N I A+ +++ A + + ++A+ Q Q TG NP FA
Sbjct: 272 LKGDGSACGIFKNEISAIQDMIKNAAIAVEQSKIVAANAQNQRNLDTGKTFNPYKDANFA 331
Query: 257 KDIYTFAQNQKQVISYAQDIFNLFNSIPAEQYK-------YLEKAYLKIPNAGSTPTNPY 309
+ ++ A+ Q ++++ AQ + F IPAE K ++ +L+ +G+ N +
Sbjct: 332 QSMFANAKAQAEILNRAQAVVKDFERIPAEFVKDSLGVCHEVQNGHLRGTPSGTVTDNTW 391
Query: 310 RQ-VVNLNQEVQTIKNNVSYYGN---RVDAALSVARDVYNLKSNQAEIVTAYNDAKTLSE 365
+ + V +K++++++G+ R+ A ++A + N S ++ Y+ +++
Sbjct: 392 GAGCAYVGETVTNLKDSIAHFGDQAERIHNARNLAYTLANFSSQYQKLGEHYD---SITA 448
Query: 366 EISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGMI 425
IS LP Q + +++V+ + N+P Q NY I+ S + + +NPF++ G+I
Sbjct: 449 AISSLPDAQ-SLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLI 507
Query: 426 S-SQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGG 484
+ S NNGA+NG+G QVGYKQFFG++KRWG RYYGF DYNH Y KS FFN+SSD+WTYG
Sbjct: 508 AASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGV 567
Query: 485 GSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQ 544
GSDLLVN IND T K+NK+S G FGGI LAGT+WLNSQYVNL NN Y AK+N NFQ
Sbjct: 568 GSDLLVNFINDKAT-KHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQ 626
Query: 545 FLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNY 604
FLFNLGLR NLA + + ++++AQHGIELG KIPTI TNYYS LGT LQYRRLYSVYLNY
Sbjct: 627 FLFNLGLRMNLARKKHRATDNAAQHGIELGTKIPTINTNYYSLLGTTLQYRRLYSVYLNY 686
Query: 605 VFAY 608
VFAY
Sbjct: 687 VFAY 690
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 385 bits (988), Expect = e-108
Identities = 242/679 (35%), Positives = 350/679 (50%), Gaps = 82/679 (12%)
Query: 1 MVKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE 60
MVKNT ++ L+E YE+L+ L +L ++ +++ AVN+A +L S N K
Sbjct: 36 MVKNTKGIQQLSENYEKLNNLLNNYNTLNTLVKLSSDPSAVNDARDNLGSSTRNLLDVKA 95
Query: 61 TSPIYNTAQAVITSVLAFWSLYAGNATSFHVTGLNDGSNAPL-GRIHQDGNCTGLQQCFM 119
SP Y + + + W + TS+ T GSN G I N G +
Sbjct: 96 NSPAYQAVLLALNAAVGLWQV-----TSYAFTACGPGSNENANGGIQTFNNVPGQNTTTI 150
Query: 120 NKETY-----------------DKMKALAENLQKAQGN-LCALSECPS--------DQLN 153
+Y +K + + A G + LS + D+
Sbjct: 151 TCNSYYEPGHGGPISTKNYAIINKAYQIIQKALTANGEGIPVLSNTTTKLDFTINGDKRT 210
Query: 154 GNNGNKTSM---------------------TKALETAQQLMDLIANTKTAMMWKNIVIAG 192
G NK + T+ + T +L+ + N
Sbjct: 211 GGEPNKKLVYPWSHGKAISTSWNATITAPTTENINTTNSAQELLKQASIIITTLNSACPN 270
Query: 193 VTNRPGGAGAITS-TGPVTDYAVFNN----IKAMIPILQQAVTLSQSNHTLSASLQAQAT 247
N GG+G +G T +F N I+ MI Q+AV ++ + + +
Sbjct: 271 FQN--GGSGYWAGISGNGTMCGMFKNEISAIQGMIANAQEAVAQAKIVSENTQNQNSLDA 328
Query: 248 GSQTNP----KFAKDIYTFAQNQKQVISYAQDIFNLFNSIPAEQYKYLEKAYLKIPNAGS 303
G NP FA+ + AQ Q ++++ A+ + F IP ++
Sbjct: 329 GKPFNPYTDASFAESMLKNAQAQAEILNQAEQVVKNFEKIPTAFVNDSLGVCYEVQGGER 388
Query: 304 TPTNPYRQVVN--------LNQEVQTIKNNVSYYGNR---VDAALSVARDVYNLKSNQAE 352
TNP + N + Q + +KN+++++G + + A ++A + N KS +E
Sbjct: 389 RGTNPGQTTSNTWGAGCAYVGQTITNLKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSE 448
Query: 353 IVTAYNDAKTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALA 412
+ YN T +S +P+ Q + ++ V+ + +P +NY +N + +
Sbjct: 449 LGNTYNSITTA---LSNIPNAQ-SLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTINQ 504
Query: 413 AMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSF 472
+ NPF+KVG++SSQ NNGA+NG+G+QVGYKQFFG+ ++WG RYYGFFDYNH +IKSSF
Sbjct: 505 ELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSF 564
Query: 473 FNSSSDIWTYGGGSDLLVNIINDSITR---KNNKLSVGLFGGIQLAGTTWLNSQYVNLTA 529
FNS+SD+WTYG G+D L N IND T KNNKLSVGLFGGI LAGT+WLNS+YVNL
Sbjct: 565 FNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLAT 624
Query: 530 FNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLG 589
NN Y+AK+N NFQFLFN+G+R NLA +KKDS+H+AQHGIELG+KIPTI TNYYSF+G
Sbjct: 625 MNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMG 684
Query: 590 TQLQYRRLYSVYLNYVFAY 608
+L+YRRLYSVYLNYVFAY
Sbjct: 685 AELKYRRLYSVYLNYVFAY 703
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 382 bits (982), Expect = e-107
Identities = 248/667 (37%), Positives = 354/667 (52%), Gaps = 71/667 (10%)
Query: 2 VKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKET 61
VKNTG L+NL ++Y+ LS L Q L + A+ A+ A+ +L S A N + T
Sbjct: 41 VKNTGALQNLADRYDNLSNLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTT 100
Query: 62 SPIYNTAQAVITSVLAFWSLYA--------GNATSFHVT--GLNDGSNAPLGRIHQDGNC 111
SP Y + + + W + A N H+ G+ N P + G+
Sbjct: 101 SPAYQAVALALNAAVGMWQVIAFGISCGPGPNLGPEHLENGGVRSFDNTP-NYSYNTGSG 159
Query: 112 TGLQQC----------FMNKETYDKMKALAENLQKAQ-----GNLCALSECPSDQLNGN- 155
T C ++ Y + + +Q A G + AL+ + +N N
Sbjct: 160 TTTTTCNGASNVGPNGILSSSEYQVLNTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQ 219
Query: 156 ---------------NGNKTSMTKALETAQQLMDLIANTKTAMMWKNIVIAGVTNRP--- 197
NGN S ++ ++ + I+ T P
Sbjct: 220 TFTKNPTTEYTYPDGNGNYYSGGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHVN 279
Query: 198 GGAGAIT---STGPVTDYA--VFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQT- 251
GG GA TG V D FN I MI Q + +Q L+A+ Q T
Sbjct: 280 GGGGAWGFGGKTGNVMDIFGDSFNAINEMIKNAQAVLEKTQQ---LNANENTQITQPDNF 336
Query: 252 NP------KFAKDIYTFAQNQKQVISYAQDIFNLFNSIPAEQYKYLEKAYLKIPNAGSTP 305
NP +FA+++ A Q +++S AQ + + F+SI + LE+ +AG
Sbjct: 337 NPYTSKDTQFAQEMLNRANAQAEILSLAQQVADNFHSIQGPIQQDLEEC--TAGSAGVIN 394
Query: 306 TNPYRQ-VVNLNQEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIVTAYNDAKTLS 364
N Y + + + +++ + +YYGN+V+ ++++ + N K + T ND+K ++
Sbjct: 395 DNTYGSGCAFVKETLNSLEQHTAYYGNQVNQDRALSQTILNFKE---ALSTLGNDSKAIN 451
Query: 365 EEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGM 424
IS LP N + +++ + N+P G Y ++ + + L + NPF+++G+
Sbjct: 452 SGISNLP-NAKSLQNMTHATQNPNSPE-GLLTYSLDTSKYNQLQTVAQELGKNPFRRIGV 509
Query: 425 ISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGG 484
I+ QNNNGA+NG+GVQ GYKQFFG+ + WGLRYYGFFDYNH YIKS+FFNS+SD+WTYG
Sbjct: 510 INYQNNNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGV 569
Query: 485 GSDLLVNIINDSITR---KNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNAT 541
G D L N IND T KNNKLSVGLFGG LAGT+WLNSQ VNLT N Y+A V+A+
Sbjct: 570 GMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSAS 629
Query: 542 NFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVY 601
NFQFLF+LGLR NLA +KKDS+H+AQHG+ELG+KIPTI T+YYSF+G +L+YRRLYSVY
Sbjct: 630 NFQFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVY 689
Query: 602 LNYVFAY 608
LNYVFAY
Sbjct: 690 LNYVFAY 696
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 382 bits (982), Expect = e-107
Identities = 248/667 (37%), Positives = 354/667 (52%), Gaps = 71/667 (10%)
Query: 2 VKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKET 61
VKNTG L+NL ++Y+ LS L Q L + A+ A+ A+ +L S A N + T
Sbjct: 41 VKNTGALQNLADRYDNLSNLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTT 100
Query: 62 SPIYNTAQAVITSVLAFWSLYA--------GNATSFHVT--GLNDGSNAPLGRIHQDGNC 111
SP Y + + + W + A N H+ G+ N P + G+
Sbjct: 101 SPAYQAVALALNAAVGMWQVIAFGISCGPGPNLGPEHLENGGVRSFDNTP-NYSYNTGSG 159
Query: 112 TGLQQC----------FMNKETYDKMKALAENLQKAQ-----GNLCALSECPSDQLNGN- 155
T C ++ Y + + +Q A G + AL+ + +N N
Sbjct: 160 TTTTTCNGASNVGPNGILSSSEYQVLNTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQ 219
Query: 156 ---------------NGNKTSMTKALETAQQLMDLIANTKTAMMWKNIVIAGVTNRP--- 197
NGN S ++ ++ + I+ T P
Sbjct: 220 TFTKNPTTEYTYPDGNGNYYSGGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHVN 279
Query: 198 GGAGAIT---STGPVTDYA--VFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQT- 251
GG GA TG V D FN I MI Q + +Q L+A+ Q T
Sbjct: 280 GGGGAWGFGGKTGNVMDIFGDSFNAINEMIKNAQAVLEKTQQ---LNANENTQITQPDNF 336
Query: 252 NP------KFAKDIYTFAQNQKQVISYAQDIFNLFNSIPAEQYKYLEKAYLKIPNAGSTP 305
NP +FA+++ A Q +++S AQ + + F+SI + LE+ +AG
Sbjct: 337 NPYTSKDTQFAQEMLNRANAQAEILSLAQQVADNFHSIQGPIQQDLEEC--TAGSAGVIN 394
Query: 306 TNPYRQ-VVNLNQEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIVTAYNDAKTLS 364
N Y + + + +++ + +YYGN+V+ ++++ + N K + T ND+K ++
Sbjct: 395 DNTYGSGCAFVKETLNSLEQHTAYYGNQVNQDRALSQTILNFKE---ALSTLGNDSKAIN 451
Query: 365 EEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGM 424
IS LP N + +++ + N+P G Y ++ + + L + NPF+++G+
Sbjct: 452 SGISNLP-NAKSLQNMTHATQNPNSPE-GLLTYSLDTSKYNQLQTVAQELGKNPFRRIGV 509
Query: 425 ISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGG 484
I+ QNNNGA+NG+GVQ GYKQFFG+ + WGLRYYGFFDYNH YIKS+FFNS+SD+WTYG
Sbjct: 510 INYQNNNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGV 569
Query: 485 GSDLLVNIINDSITR---KNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNAT 541
G D L N IND T KNNKLSVGLFGG LAGT+WLNSQ VNLT N Y+A V+A+
Sbjct: 570 GMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSAS 629
Query: 542 NFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVY 601
NFQFLF+LGLR NLA +KKDS+H+AQHG+ELG+KIPTI T+YYSF+G +L+YRRLYSVY
Sbjct: 630 NFQFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVY 689
Query: 602 LNYVFAY 608
LNYVFAY
Sbjct: 690 LNYVFAY 696
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 352 bits (904), Expect = 1e-98
Identities = 240/655 (36%), Positives = 319/655 (48%), Gaps = 100/655 (15%)
Query: 2 VKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKET 61
VKN +++ L++ YEQLS+ LA + + QA+N A+++L A
Sbjct: 41 VKNADKVQKLSDVYEQLSKLLAN----DNGTSSKTSAQAINQAVNNLNESAKTLAGGTTN 96
Query: 62 SPIYNTAQAVITSVLAFWSL--YA------------GNATSFHVTG-------LNDGSNA 100
SP Y + S L W+ YA N +FH T +N G +
Sbjct: 97 SPAYQATLLALRSALGLWNSMGYAVVCGGYIKKPGENNQKNFHYTDENGNGTTINCGGST 156
Query: 101 PLGRIHQDGNCTGLQ---QCFMNKETYDKMKALAENLQKA--QGNLCALSE--------- 146
H L+ ++ E Y+K+ + L KA Q L L+
Sbjct: 157 NSNGTHSPNGTNTLKADKNVSLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHV 216
Query: 147 -CPSDQLNGNNGNKTSMTKALETAQQLMDLIANTKTAMMWKNIVIAGVTNRPGGAGAITS 205
DQ ++ T+ T ++T +L+ +T
Sbjct: 217 TTSKDQQGTSSDQTTTTTSVIDTTNDAQNLLTQAQT------------------------ 252
Query: 206 TGPVTDYAVFNNIKAMIPIL-QQAVTLSQSNHTLSASLQAQATGSQTNPKFAKDIYTFAQ 264
+ N +K P+L ++ + +N + S Q G + F + +
Sbjct: 253 --------IVNTLKDYCPMLIAKSSSNGGTNGANTPSWQTAGGGKNSCATFGAEFSAISD 304
Query: 265 NQKQVISYAQDIFNLFNSIPAEQYKYLEKAY-LKIPNAGSTPTNPYRQVVNLNQEVQTIK 323
+IS AQ I + A Q K + + + + GS + N + + +K
Sbjct: 305 ----MISNAQKIVQETQQLNANQPKNITQPNNFNLNSPGSLTALAQSMLKNAQSQTEILK 360
Query: 324 NNVSYYGNRVDAALSVARDVYNLKSNQAEIVTAYNDAKTLSEEISKLPHNQVNTKDIVTL 383
A VA D L S + D +S + P N T
Sbjct: 361 -----------LANQVASDFDKLSSGYLKDYIGKCDVSGVSSS-NMTPQNMNTTWGKGCA 408
Query: 384 PYDKNAPAAGQSNYQINPEQQSNLNQALAA-------MSNNPFKKVGMISSQNNNGALNG 436
++ + S N + L+QA + NNPFK+VG+I SQ NNGA+NG
Sbjct: 409 GVEETLTSLKASTTDFNNQTTPQLDQAQTLANTLTQELGNNPFKRVGIIGSQTNNGAMNG 468
Query: 437 LGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDS 496
LGVQ GYKQFFG+ +RWGLRYYGFFDYNH YIKSSFFNSSSD+ TYG GSDLL N IND
Sbjct: 469 LGVQAGYKQFFGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVLTYGVGSDLLFNFINDK 528
Query: 497 ITR---KNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRT 553
T KNNK+SVGLFGGI LAGT+WLNSQ+VNL +N YSAKVN NFQFLFNLGLRT
Sbjct: 529 NTNFLGKNNKISVGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRT 588
Query: 554 NLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVFAY 608
NLA +KKDS+HSAQHG+ELG+KIPTI TNYYS+LGT+L+YRRLYSVYLNYVFAY
Sbjct: 589 NLARPKKKDSDHSAQHGMELGVKIPTINTNYYSYLGTKLEYRRLYSVYLNYVFAY 643
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 349 bits (896), Expect = 1e-97
Identities = 214/554 (38%), Positives = 304/554 (54%), Gaps = 54/554 (9%)
Query: 85 NATSFHVTGLNDGSNAPLGRIHQDGNCTGLQQCFMNKETYDKMKALAENLQKAQGNLCAL 144
N S VTG+N+ +DG T +Q T + ++ +A GN +
Sbjct: 215 NNCSSQVTGVNN---------QKDGTKTKIQTIDGKSVTTTISSKVVDS--RADGNTTGV 263
Query: 145 SECPSDQLNGNNGNKTSMTKALETAQQLMDLIANTKTAMMWKNIVIAGVTNRPGGAGAIT 204
S ++ N G S L A L++ I N N + N P + T
Sbjct: 264 SY--TEITNKLEGVPDSAQALLAQASTLINTINNACPYFHASN---SSEANAPKFS---T 315
Query: 205 STGPVTDYAVFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQ--------TNPKFA 256
+TG + A I A+ ++ A L ++ Q G+ T+ FA
Sbjct: 316 TTGKICG-AFSEEISAIQKMITDAQELVNQTSVINEHEQTTPVGNNNGKPFNPFTDASFA 374
Query: 257 KDIYTFAQNQKQVISYAQDIFNLFNSIPAE-QYKYLEKAYLKIPN----------AGSTP 305
+ + A Q ++++ A+ + N ++ K +L N GS P
Sbjct: 375 QGMLANASAQAKMLNLAEQVGQAINPERLSGTFQNFVKGFLATCNNPSTAGTGGTQGSAP 434
Query: 306 TNPYRQV-----VNLNQEVQTIKNNVSYYGNR---VDAALSVARDVYNLKSNQAEIVTAY 357
Q + Q + +KN+++++G + + A ++A + N KS +E+ Y
Sbjct: 435 GTVTTQTFASGCAYVGQTITNLKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTY 494
Query: 358 NDAKTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNN 417
N T +S +P+ Q + ++ V+ + +P +NY +N + + + N
Sbjct: 495 NSITTA---LSNIPNAQ-SLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRN 550
Query: 418 PFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSS 477
PF+KVG++SSQ NNGA+NG+G+QVGYKQFFG+ ++WG RYYGFFDYNH +IKSSFFNS+S
Sbjct: 551 PFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSAS 610
Query: 478 DIWTYGGGSDLLVNIINDSITR---KNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPY 534
D+WTYG G+D L N IND T KNNKLSVGLFGGI LAGT+WLNS+YVNL NN Y
Sbjct: 611 DVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVY 670
Query: 535 SAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQY 594
+AK+N NFQFLFN+G+R NLA +KKDS+H+AQHGIELG+KIPTI TNYYSF+G +L+Y
Sbjct: 671 NAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKY 730
Query: 595 RRLYSVYLNYVFAY 608
RRLYSVYLNYVFAY
Sbjct: 731 RRLYSVYLNYVFAY 744
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 268 bits (684), Expect = 4e-73
Identities = 173/485 (35%), Positives = 248/485 (50%), Gaps = 62/485 (12%)
Query: 151 QLNGNNGNKTSMTKALETAQQLMDLIANTK-TAMMWKNIVIAGVTNRPGGAGAITSTGPV 209
Q+ N G ++ A E L+ K TA + + N A + +T
Sbjct: 34 QMVKNTGEIQKVSNAYENLNNLLTRYNELKQTASNTDSSTAQAIDNLEKSASRLKTTPNT 93
Query: 210 TDYAVFNNIKAMIPILQQAVTLSQSNHTLSAS----LQAQATGSQTNPKFAKDIYTFAQN 265
+ AV + + + + + Q + + +N++LS+S L+A + Q + + +
Sbjct: 94 ANQAVSSALSSAVG-MWQVIASNLANNSLSSSEYEKLKATSQLLQNTLENKNNNLKIEND 152
Query: 266 QKQVISYAQDIFNLFNSIPAEQYKYLEKAYLKIPNAGSTPTNPYRQVVNLNQEVQTIKNN 325
Q+++ A I N S + P P+ + T N
Sbjct: 153 YDQLLTQASTIINTLQS--------------QCPGVDGGNGKPWG--------INTSGNA 190
Query: 326 VSYYGNR-------VDAALSVARDVYNLKSNQAEIVTAYNDA----------KTLSEEIS 368
+ +G+ +D+A A D A+ +A +++ IS
Sbjct: 191 CAIFGSTFNAINSMIDSAKKAAADARRTAPESPNQQNAFTNADFNKNLNQVSSVINDTIS 250
Query: 369 KLPHNQVNT--KDIVTLPYDK---NAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVG 423
L + + T I P K + + +Y +N Q S +NPF+ VG
Sbjct: 251 YLKGDNLETIYNTIQKTPNSKGFQSLVSRSSYSYSLNETQYSQFQTTTKEFGHNPFRSVG 310
Query: 424 MISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYG 483
+I+SQ+NNGA+NG+GVQ+GYKQFFG++K +G+RYYGFFDYN+ YIKS+FFNS+S+++TYG
Sbjct: 311 LINSQSNNGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYG 370
Query: 484 GGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNF 543
GSDLL+N IN R N K+S G+FGGI LAGTTWLN+Q NL N+ YSAK+N TNF
Sbjct: 371 AGSDLLLNFINGGSDR-NRKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAKINNTNF 429
Query: 544 QFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLN 603
QFLFN GLR HGIELG+KIPTI TNYYSF+G +L YRRLYS+YLN
Sbjct: 430 QFLFNTGLRL-----------QGIHHGIELGVKIPTINTNYYSFMGAKLAYRRLYSLYLN 478
Query: 604 YVFAY 608
YV AY
Sbjct: 479 YVLAY 483
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 159 bits (401), Expect = 3e-40
Identities = 143/468 (30%), Positives = 223/468 (47%), Gaps = 81/468 (17%)
Query: 172 LMDLIANTKTAMMWKNIVIAGVTNRPGGAGAITSTGPVTDY----AVFNNIKAMIPILQQ 227
L+DL KT N+ G TN GA A +T + A++N + I L Q
Sbjct: 110 LIDLYPTLKT----NNLHQCGSTNSGNGATAAAATNNSPCFQGNLALYNEMVDSIKTLSQ 165
Query: 228 AVT---LSQSNHTLSASLQAQATGSQTNPKFAKDIYTFAQNQKQVISYAQDIFNLF--NS 282
++ N+T SA+L Q + T + + +F Q Q+ N N
Sbjct: 166 NISKNIFQGDNNTTSANLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYENG 225
Query: 283 IPAEQYKY-LEKAYLKIPNAGSTPTNPYRQVVNLNQEVQTIKNNVSYYGNRVDAALSVAR 341
+ A+Q Y L++A + + +G + G +DAAL A+
Sbjct: 226 VTAQQIAYVLKQASITMGPSGDSGAA----------------------GAFLDAAL--AQ 261
Query: 342 DVYNLKSNQAEIVTAYNDAKTLSEEISKLPHNQVN-TKDIVTLPYDKNAPAAGQSNYQIN 400
V+N + A ND ++E + L N VN +++ +TL NA + + YQ++
Sbjct: 262 HVFNSAN-------AGNDLS--AKEFTSLVQNIVNNSQNALTLA--NNANISNSTGYQVS 310
Query: 401 PEQQSNLNQALAA-MSNNPFKKVGMISSQNNN------------------GALNGLGVQV 441
N++QA + + NN + +++ NN A NG ++
Sbjct: 311 --YGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKI 368
Query: 442 GYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKN 501
GYKQFFGE+K GLRYYGFF YN + + + ++ TYG G+D+L N+ + S ++
Sbjct: 369 GYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRS 428
Query: 502 NKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNP-YSAKVNATNFQFLFNLGLRTNLATARK 560
L+ G FGGIQLAG T+++ T N+P +++ AT FQFLF++GLR N K
Sbjct: 429 --LNAGFFGGIQLAGDTYIS------TLRNSPQLASRPTATKFQFLFDVGLRMNFGIL-K 479
Query: 561 KDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVFAY 608
KD + QH IE+G++IPTI YY G +++Y R YSVY Y +A+
Sbjct: 480 KDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF 527
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 156 bits (395), Expect = 1e-39
Identities = 89/212 (41%), Positives = 120/212 (55%), Gaps = 14/212 (6%)
Query: 404 QSNLNQALAAMSN--NPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFF 461
Q NL Q + N P+ + + +G +NG G+QVGYKQFFG K GLRYY FF
Sbjct: 267 QENLKQLGGMLKNYDEPYLPQFGPGTSSQHGVINGFGIQVGYKQFFGSKKNIGLRYYAFF 326
Query: 462 DYNHGYIKSSFFNSS--SDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTW 519
DY G+ + NS+ ++I+TYG G+D L NI + + L+VG+FGGIQ+AG TW
Sbjct: 327 DY--GFTQLGSLNSAVKANIFTYGAGTDFLWNIFRRVFS--DQSLNVGVFGGIQIAGNTW 382
Query: 520 LNSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATA---RKKDSEHSAQHGIELGIK 576
+S + N + TNFQFLFNLGLR + A+ R + S QHG+E G+K
Sbjct: 383 DSSLRGQI---ENSFKEYPTPTNFQFLFNLGLRAHFASTMHRRFLSASQSIQHGMEFGVK 439
Query: 577 IPTITTNYYSFLGTQLQYRRLYSVYLNYVFAY 608
IP I Y G + YRRLY+ Y+NY +
Sbjct: 440 IPAINQRYLKANGADVDYRRLYAFYINYTIGF 471
Score = 25.8 bits (55), Expect = 3.3
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 26/167 (15%)
Query: 1 MVKNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKE 60
+V + N N + Q + L Q+ ++ + A ++QA+ LS++ NN N
Sbjct: 111 IVNTNTTVGNNNAELTQFKKILPQIEQRFETNKNAYSVQALQVYLSNVLYNLVNNSNNGS 170
Query: 61 TSPIYNTAQAVIT---------SVLAFWSLYAGNA--------TSFHVTGL-------ND 96
+ + +I S+LA S+ NA S + GL ND
Sbjct: 171 NNGVVPEYVGIIKVLYGSQNEFSLLATESVALLNALTRVNLDSNSVFLKGLLAQMQLFND 230
Query: 97 GSNAPLGRIHQDGNCTGLQQCFMN--KETYDKMKALAENLQKAQGNL 141
S+A LG+I ++ G K D++ ENL++ G L
Sbjct: 231 TSSAKLGQIAENLKNGGAGAMLQKDVKTISDRIATYQENLKQLGGML 277
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 143 bits (361), Expect = 1e-35
Identities = 133/482 (27%), Positives = 210/482 (42%), Gaps = 51/482 (10%)
Query: 152 LNGNNGNKTSMTKALETAQQLMDLIANTKTAMMWKNIVIAGVTNRPGGAGAITSTGPVTD 211
LN N G + + +Q L L+ T + ++ + + G+G + G
Sbjct: 65 LNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNGNDVSANALLSGAVGSGTCAAAGTAGG 124
Query: 212 YAVFNNIKAMIPILQQAVTLSQSNHTLSASLQAQAT-GSQTNPKFAKDIYTFAQNQKQVI 270
+ Q A T + S + + +T GSQTN T N +Q +
Sbjct: 125 TTLNT---------QSACTAAGYYWLPSLTDRILSTIGSQTN----YGTNTNFPNMQQQL 171
Query: 271 SYAQDIFNLFNSIPAEQYKYLEKAYLKIPNA--------GSTPTNPYRQVVNLNQEVQTI 322
+Y FN++ K LEK N+ GS +Q + Q Q I
Sbjct: 172 TYLNAGNVFFNAMN----KALEKNGTATANSTSSTSGATGSDGQTYSQQAIQYLQGQQNI 227
Query: 323 KNNVSYYGNRVDAAL-----SVARDVYNLKSNQAEIVTAYNDAKTLSEEI-SKLPHNQVN 376
NN + + + L +VA ++ N + N A S+ + ++L N ++
Sbjct: 228 LNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQLVYNELTKNTIS 287
Query: 377 TKDIVTLPYDKNAPAAGQS----------NYQINPEQQSNLNQALAAMSNNPFKKVGMIS 426
+ + N A Q N Q+ ++ + LN + +M P + G
Sbjct: 288 GSAVNNAGINSNQANAVQGRASQLPNALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSR 347
Query: 427 SQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGS 486
+ N LNG +VGYKQFFG+ + GLRYYGFF YN + ++ ++TYG G+
Sbjct: 348 ATN---ILNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGT 404
Query: 487 DLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQFL 546
D+L NI + S +N + +G F GIQLAG T+ Q N K+N T+FQFL
Sbjct: 405 DVLYNIFSRSY--QNRSVDMGFFSGIQLAGETF---QSTLRDDPNVKLHGKINNTHFQFL 459
Query: 547 FNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVF 606
F+ G+R N K + H+ QH +E G+ +PTI YY GT ++Y R YSVY +Y +
Sbjct: 460 FDFGMRMNFGKLDGKSNRHN-QHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGY 518
Query: 607 AY 608
++
Sbjct: 519 SF 520
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 131 bits (330), Expect = 4e-32
Identities = 94/318 (29%), Positives = 158/318 (49%), Gaps = 34/318 (10%)
Query: 297 KIPNAGSTPTNPYRQVVN-LNQEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIVT 355
K N ++ T+ ++ + + ++Q Q ++N++S +A L++ +++ + T
Sbjct: 948 KDSNVSTSLTSAFQAITSAISQGFQALQNDIS-----PNAILTLLQEI------TSNTTT 996
Query: 356 AYNDAKTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMS 415
+ ++TL + + V K I + +N Q N N Q L+Q AA S
Sbjct: 997 IQSFSQTLRQLLGDKTFFMVQQKLIDAMINARNQVQNAQ-NQANNYGSQPVLSQYAAAKS 1055
Query: 416 NNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNS 475
+G NGLGV +GYK FFG++++ GLR+Y FFDY I + +
Sbjct: 1056 TQ-------------HGMSNGLGVGIGYKYFFGKARKLGLRHYFFFDYGFSEIGLANQSV 1102
Query: 476 SSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYS 535
++I+ YG G+D L N+ + K L+ GLF G+QL G TWL+S + N +
Sbjct: 1103 KANIFAYGVGTDFLWNLFRRTYNTK--ALNFGLFAGVQLGGATWLSSLRQQIID-NWGNA 1159
Query: 536 AKVNATNFQFLFNLGLRTNLATARKKDSEHS-----AQHGIELGIKIPTITTNYYSFLGT 590
+++TNFQ N G+RTN A ++ + +Q +E GIK+P I Y + G
Sbjct: 1160 NDIHSTNFQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVEFGIKVPLINQAYLNSAGA 1219
Query: 591 QLQYRRLYSVYLNYVFAY 608
+ YRRLY+ Y+NY+ +
Sbjct: 1220 DVSYRRLYTFYINYIMGF 1237
Score = 39.3 bits (90), Expect = 3e-04
Identities = 70/312 (22%), Positives = 107/312 (33%), Gaps = 41/312 (13%)
Query: 36 NNIQAVNNALSDLK--SFASNNHTNKETSPIY-----------NTAQAVITSVLAFWSLY 82
+ I+ NNAL + SF+ + K TS Y N + TS S
Sbjct: 377 STIEQYNNALKQISWISFSEPKNLLKNTSNNYQIGTVTNDQGQNISAYDCTSATGSLSSD 436
Query: 83 AGNATSFHVTGLNDGSNA---PLGRIHQDGNCTGLQQCFMNK--------ETYDKMKALA 131
A + S T + +N+ L + G +Q +N Y+ +K
Sbjct: 437 ASSGISCSATSSTNNTNSFDNSLVATSKVQTINGKEQIGVNSFNLVSQVWSVYNSLKTSE 496
Query: 132 ENLQKAQGNLC------ALSECPSDQ----LNGNNG--NKTSMTKALETAQQLMDLIANT 179
ENLQK LC S C S ++GN N S T T Q +
Sbjct: 497 ENLQKNAKILCNNGSQSGTSPCNSSSGGLSISGNAQLQNILSPTNGTTTNTQAKSNASKL 556
Query: 180 KTAMMWKNIVIAGVTNRPGGAGAITSTGPVTDYAVFNNIKAMIPILQQAVTLSQSNHTLS 239
K +M N A TN +G T + T N + + QQ++ + N +
Sbjct: 557 KAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSIQSAFQNQENN 616
Query: 240 ASLQAQATGSQTNPK-FAKDIYTFAQNQKQVISYAQDIFNLFNSI----PAEQYKYLEKA 294
A A + +NP T NQ I + + L N+I P + + ++
Sbjct: 617 IQAWANALYNTSNPNGNQSQNLTTNNNQDLRIQLRANFYQLINTINQQVPTDMNALINQS 676
Query: 295 YLKIPNAGSTPT 306
+GS T
Sbjct: 677 QQTQQTSGSAST 688
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 131 bits (329), Expect = 6e-32
Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 8/174 (4%)
Query: 431 NGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLV 490
+ ++NG G ++GYKQFF K GLRYYGF DY + + +++ TYG G+D L
Sbjct: 310 SASMNGFGAKMGYKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLY 369
Query: 491 NIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQFLFNLG 550
N+ S R+ + ++GLF G Q+AG TW ++ NL + P V +++FQFLF+LG
Sbjct: 370 NVYERS--RRRERTTIGLFFGAQIAGQTW-STNVTNLLSGQRP---DVKSSSFQFLFDLG 423
Query: 551 LRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNY 604
+RTN A+ ++H GIE G+KIP I Y++ G+ Y R +S Y+ Y
Sbjct: 424 VRTNF--AKTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVGY 475
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 129 bits (325), Expect = 2e-31
Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 14/204 (6%)
Query: 402 EQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFF 461
E Q+ +NQ F + +N+ +NG GV++GYKQFFG+ + +GLRYYGF+
Sbjct: 503 EMQTKVNQVYQMGFARNF-----LEHNSNSNNMNGFGVKMGYKQFFGKKRMFGLRYYGFY 557
Query: 462 DYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLN 521
D+ + + + + +YG G+D L N+ R + +G F GIQLAG TW
Sbjct: 558 DFGYAQFGTESSLVKATLSSYGAGTDFLYNVFTRK--RGTEAIDIGFFAGIQLAGQTW-K 614
Query: 522 SQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLA-TARKKDSEHSAQHGIELGIKIPTI 580
+ +++ N+ K T+FQFLF+LG+RTN + A +K S S GIE G+KIP +
Sbjct: 615 TNFLDQVDGNH---LKPKDTSFQFLFDLGIRTNFSKIAHQKRSRFS--QGIEFGLKIPVL 669
Query: 581 TTNYYSFLGTQLQYRRLYSVYLNY 604
YY G +YRR +S Y+ Y
Sbjct: 670 YHTYYQSEGVTAKYRRDFSFYVGY 693
Score = 31.2 bits (69), Expect = 0.080
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 300 NAGSTPTNPYRQVVNLNQEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIVTAYND 359
N G T NP R VN ++Q++ NN++ + L R+ NL +++ V N
Sbjct: 115 NNGDTGNNPPRGNVNATFDMQSLVNNLNKLTQLIGETL--IRNPENLPNSKVFNVKFGNQ 172
Query: 360 AKTLSEEISKLPHNQVNTKD---------IVTLPYDK---NAPAAGQSNYQIN--PEQQS 405
+ ++ LP NT D + TL Y++ N + SN +N P+
Sbjct: 173 STVIA-----LPEGLANTMDALNNDITNALTTLWYNQTLTNKSFSTPSNTSVNFSPQVLQ 227
Query: 406 NLNQALAAMSNNPFKKVGMISSQNNNGALN 435
+L Q A +NN + S+QN A N
Sbjct: 228 HLLQDGLATANN---NQTICSTQNQCTATN 254
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 123 bits (308), Expect = 2e-29
Identities = 89/256 (34%), Positives = 119/256 (45%), Gaps = 47/256 (18%)
Query: 378 KDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGL 437
KD + +KNA G S YQ+ QS N ++ N P VG + + GL
Sbjct: 37 KDYKAVKGEKNAWYLGIS-YQVGQASQSVKNPPKSSEFNYPKFPVG---KTDYLAVMQGL 92
Query: 438 GVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSS--------------------- 476
G+ VGYKQFFGE + +G RYYGF DY H ++ S
Sbjct: 93 GLTVGYKQFFGEKRWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGTMGNL 152
Query: 477 SDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPY-- 534
SD++TYG G D L N+IN S G F G Q+AG +W N+ L +PY
Sbjct: 153 SDMFTYGVGIDTLYNVIN------KEDASFGFFFGAQIAGNSWGNTTGAFLET-KSPYKH 205
Query: 535 -SAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQH-GIELGIKIPTITTNYYSFLGTQL 592
S ++ FQFLFNLG+RT H QH + G+KIPTI Y++
Sbjct: 206 TSYSLDPAIFQFLFNLGIRT-----------HIGQHQEFDFGVKIPTINVYYFNHGNLSF 254
Query: 593 QYRRLYSVYLNYVFAY 608
YRR YS+Y+ Y + +
Sbjct: 255 TYRRQYSLYVGYRYNF 270
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 105 bits (261), Expect = 4e-24
Identities = 78/255 (30%), Positives = 108/255 (41%), Gaps = 93/255 (36%)
Query: 431 NGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSS----------FFNSSSDIW 480
N + GLGV GYK F G+ + +GLRYYGFFDY H +S + +D++
Sbjct: 150 NQPMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMY 209
Query: 481 TYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQ-------YV-------- 525
TYG G+D+L N+I+ K + G F G+ AG TW N++ YV
Sbjct: 210 TYGFGTDMLFNVID------KPKATAGFFVGVNFAGNTWTNNRVGYFKDGYVYGVNTDAD 263
Query: 526 --------------------------NLTAFNNPYSAKVNATNFQFLFNLGLRTNLATAR 559
N +AKVN T FQFL N+G+RTN+
Sbjct: 264 AYMTNADGTITCGDTTPASCNVGINPNSVYTTGKLNAKVNHTIFQFLVNVGIRTNI---- 319
Query: 560 KKDSEHSAQHGIELGIKIPTITTNYY--------------------SFLGTQLQY----- 594
EH HGIE GIKIPT+ ++ + G + +
Sbjct: 320 ---FEH---HGIEFGIKIPTLPNYFFKGSTTIRAKKQGPLENGNPTTITGAETNFSLTQT 373
Query: 595 -RRLYSVYLNYVFAY 608
RR YS+YL YV+ +
Sbjct: 374 LRRQYSMYLRYVYTF 388
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 102 bits (255), Expect = 2e-23
Identities = 72/212 (33%), Positives = 103/212 (47%), Gaps = 49/212 (23%)
Query: 428 QNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGY---IKSSFFNSSS------- 477
Q N + G +GY+ FF K +GLR YGFFDY H +K+ +NS +
Sbjct: 49 QATNATIKGFDALLGYQFFF--EKHFGLRLYGFFDYAHANSIKLKNPNYNSEAAQVASQI 106
Query: 478 --------------------DIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGT 517
++ TYGG D++VN+IN+ I +S+G FGGIQLAG
Sbjct: 107 LGKQEINRLTNIADPRTFEPNMLTYGGAMDVMVNVINNGI------MSLGAFGGIQLAGN 160
Query: 518 TWLNSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKI 577
+WL + AT+FQFLFN+G AR + +HS+ IE G+K
Sbjct: 161 SWLMATPSFEGILVEQALVSKKATSFQFLFNVG-------ARLRILKHSS---IEAGVKF 210
Query: 578 PTITTN-YYSFLGTQLQYRRLYSVYLNYVFAY 608
P + N Y + + +RR+YS Y+NYVF +
Sbjct: 211 PMLKKNPYITAKNLDIGFRRVYSWYVNYVFTF 242
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 102 bits (254), Expect = 3e-23
Identities = 69/250 (27%), Positives = 118/250 (46%), Gaps = 23/250 (9%)
Query: 367 ISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINP-EQQSNLNQALAAMS-----NNPFK 420
+S L H + T++ + KN NYQ +N+++ S N
Sbjct: 11 VSLLTHALMATEESAAPSWTKNLYMG--FNYQTGSINLMANIHEVREVTSYQTGYTNVMT 68
Query: 421 KVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYN-HGYIKSSFFNSSSDI 479
+ + N G+ NG+G+ +GY FF K GLRY+ F D+ +G + +++
Sbjct: 69 SINSVKKLTNMGS-NGIGLVMGYNHFFHPDKVLGLRYFAFLDWQGYGMRYPKGYYGGNNM 127
Query: 480 WTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYVNLTAFNNPYSAKV 538
TYG G D + N S + + + +G+FGGI +AG +W + ++ L N S+ V
Sbjct: 128 ITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQELLGITN--SSAV 185
Query: 539 NATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLY 598
+ T+FQFLFN G + +H E+G K PT+ YY+ ++Q RR++
Sbjct: 186 DNTSFQFLFNFGFKALFVD----------EHEFEIGFKFPTLNNKYYTTDALKVQMRRVF 235
Query: 599 SVYLNYVFAY 608
+ Y+ Y + +
Sbjct: 236 AFYVGYNYHF 245
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 97.4 bits (241), Expect = 9e-22
Identities = 74/233 (31%), Positives = 110/233 (46%), Gaps = 64/233 (27%)
Query: 421 KVGMISSQ----NNNGALN---------GLGVQVGYKQFFGESKRWGLRYYGFFDYNH-- 465
+V MI +Q N+NG G G +VGYKQFFG+ K +G+RYYGFFDY H
Sbjct: 29 QVSMIQNQTKMVNDNGLQKPLIKFPPYAGPGFEVGYKQFFGKKKWFGMRYYGFFDYAHNR 88
Query: 466 -------------GYIKSSF-FNSSS-------------DIWTYGGGSDLLVNIINDSIT 498
G+I +SF F ++ +++TYG G D L N +N
Sbjct: 89 FGVMKKGIPVGESGFIYNSFSFGGNTLTERDSYQGQYYINLFTYGVGLDTLWNFVN---- 144
Query: 499 RKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYS-AKVNATNFQFLFNLGLRTNLAT 557
+ G GIQLAG +W S + ++ +S + + NFQFL+ G+RT++A
Sbjct: 145 --KENMVFGFVVGIQLAGDSWATSISKEIGSYVKHHSNSSYSPANFQFLWKFGVRTHIA- 201
Query: 558 ARKKDSEHSAQHGIELGIKIPTITTNYYSFLG-----TQLQYRRLYSVYLNYV 605
+ +ELGIK+PTIT + Q RR+Y+ ++Y+
Sbjct: 202 ---------IHNSLELGIKVPTITHRLFFITNEKGYTLQADVRRVYAFQISYL 245
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 96.7 bits (239), Expect = 2e-21
Identities = 90/334 (26%), Positives = 152/334 (44%), Gaps = 49/334 (14%)
Query: 304 TPTNPYRQVVNLNQ---EVQTIKNNVSYYGNRV--DAALSVAR---DVYNLKS---NQAE 352
T +N ++ LNQ E+ + N +Y N + +A L+ + Y L+S N +
Sbjct: 58 TISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEK 117
Query: 353 IVTAYNDAKT---LSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQ 409
IV + L++ + K+ N ++V +N Q S+L+
Sbjct: 118 IVMLSGGVASNPKLAQALEKMQEPITNPLELV-----ENLKNLELQFSQSQNSMLSSLSS 172
Query: 410 ALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDY---NHG 466
+A +SN+ + S N ++ G+G+ VGYK FF + K G RYY F+DY N G
Sbjct: 173 QIAQISNS-LNALDPSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFG 231
Query: 467 YIKSSFFN-SSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNS--- 522
++ + F + YG G D L N I+++ SVG + G LAG++W+ S
Sbjct: 232 FVGNGFDGLGKMNNHLYGLGIDYLFNFIDNA----QKHSSVGFYVGFALAGSSWVGSGLG 287
Query: 523 QYVNLTAFNN----PYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIP 578
+V+ F N Y AK++ + FQ N G+R N+ +G E+G+KIP
Sbjct: 288 MWVSQMDFINNYLTDYRAKMHTSFFQIPLNFGVRVNV----------DRHNGFEMGLKIP 337
Query: 579 TITTNYYSF----LGTQLQYRRLYSVYLNYVFAY 608
++Y L L ++RL ++YV+++
Sbjct: 338 LAVNSFYETHGKGLNASLFFKRLVMFNVSYVYSF 371
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 96.3 bits (238), Expect = 2e-21
Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 34/230 (14%)
Query: 397 YQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLR 456
Y N + +++ G N A+NG G VGYK FF ++ ++G+R
Sbjct: 73 YGSNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKAPQFGMR 132
Query: 457 YYGFFDYNHGYIKSSFFN----------SSSDIWTYGGGSDLLVNIINDSITRKNNKLSV 506
YYGFFD+ Y K +N S S ++ YG G+D+L N +I + N L
Sbjct: 133 YYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAGTDVL---FNPAIFNREN-LHF 188
Query: 507 GLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHS 566
G F G+ + GT+W + Y Y + +NFQ L N G+R +
Sbjct: 189 GFFLGVAIGGTSWGPTNYY-FKDLAEEYRGSFHPSNFQVLVNGGIRLG-----------T 236
Query: 567 AQHGIELGIKIPTITTNYYSFL------GT--QLQYRRLYSVYLNYVFAY 608
G E+G+KI TI NYY+ GT + + R Y+ Y Y+ ++
Sbjct: 237 KHQGFEIGLKIQTIRNNYYTASADNVPEGTTYRFTFHRPYAFYWRYIVSF 286
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 95.9 bits (237), Expect = 3e-21
Identities = 72/231 (31%), Positives = 104/231 (44%), Gaps = 52/231 (22%)
Query: 411 LAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFG------ESKRWGLRYYGFFDYN 464
L A +NP S+ NGALNG G+ VGYK+FF SK +G R YG FDY
Sbjct: 59 LTANKHNPGGTNINWHSKYANGALNGFGLNVGYKKFFQFKSLDMTSKWFGFRVYGLFDYG 118
Query: 465 HGYIKSSFFNSSS---DIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLN 521
H + + + D+ ++G GSDLL +II+ + S G+FGG+ + G TW +
Sbjct: 119 HADLGKQVYAPNKIQLDMVSWGVGSDLLADIID------KDNASFGIFGGVAIGGNTWKS 172
Query: 522 S--------------------QYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKK 561
S Y N N PYS + FQ N G+R N+
Sbjct: 173 SAANYWKEQIIEAKGPDVCTPTYCNP---NAPYSTNTSTVAFQVWLNFGVRANI------ 223
Query: 562 DSEHSAQHGIELGIKIPTITTNYYSF--LGTQLQY--RRLYSVYLNYVFAY 608
+G+E G+++P + + S T L Y +R YS+YL Y + +
Sbjct: 224 ----YKHNGVEFGVRVPLLINKFLSAGPNATNLYYHLKRDYSLYLGYNYTF 270
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 95.5 bits (236), Expect = 3e-21
Identities = 90/334 (26%), Positives = 151/334 (44%), Gaps = 49/334 (14%)
Query: 304 TPTNPYRQVVNLNQ---EVQTIKNNVSYYGNRV--DAALSVAR---DVYNLKS---NQAE 352
T +N ++ LNQ E+ + N +Y N + +A L+ + Y L+S N +
Sbjct: 53 TISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEK 112
Query: 353 IVTAYNDAKT---LSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQ 409
IV + L + + K+ N ++V +N Q S+L+
Sbjct: 113 IVMLSGGVASNPKLVQALEKMQEPITNPLELV-----ENLKNLELQFSQSQNSMLSSLSS 167
Query: 410 ALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDY---NHG 466
+A +SN+ + S N ++ G+G+ VGYK FF + K G RYY F+DY N G
Sbjct: 168 QIAQISNS-LNALDPSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFG 226
Query: 467 YIKSSFFN-SSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNS--- 522
++ + F + YG G D L N I+++ SVG + G LAG++W+ S
Sbjct: 227 FVGNGFDGLGKMNNHLYGLGIDYLFNFIDNA----QKHSSVGFYVGFALAGSSWVGSGLG 282
Query: 523 QYVNLTAFNN----PYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIP 578
+V+ F N Y AK++ + FQ N G+R N+ +G E+G+KIP
Sbjct: 283 MWVSQMDFINNYLTDYRAKMHTSFFQIPLNFGVRVNV----------DRHNGFEMGLKIP 332
Query: 579 TITTNYYSF----LGTQLQYRRLYSVYLNYVFAY 608
++Y L L ++RL ++YV+++
Sbjct: 333 LAVNSFYETHGKGLNASLFFKRLVMFNVSYVYSF 366
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 94.0 bits (232), Expect = 1e-20
Identities = 70/228 (30%), Positives = 104/228 (44%), Gaps = 40/228 (17%)
Query: 401 PEQQSNLNQALAAMSNN---PFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRY 457
P +N + NN P ++ + + NN G + G+ GYK FFG++KR+G R
Sbjct: 42 PSANNNTPINTSMFGNNQAAPAQETPSVINTNNYGQMYGVDAMAGYKWFFGKTKRFGFRT 101
Query: 458 YGFFDYNHGYI-----KSSFFNSSSDI--WTYGGGSDLLVNIINDSITRKNNKLSVGLFG 510
YG++ YNH + K + +S + +TYG G D L N K + GLF
Sbjct: 102 YGYYSYNHANLSFVGSKLGIMDGASQVNNFTYGVGFDALYNFYES----KEGYNTAGLFV 157
Query: 511 GIQLAGTTWL---------NSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKK 561
G L G +++ Q N TA SA +N + FQ G R+N
Sbjct: 158 GFGLGGDSFIVQGESYLKSQMQICNNTA---GCSASMNTSYFQMPVEFGFRSNF------ 208
Query: 562 DSEHSAQHGIELGIKIPTITTNYYSFLG----TQLQYRRLYSVYLNYV 605
S+HS GIE+G K+P T +Y G + Y+R +S+Y NY+
Sbjct: 209 -SKHS---GIEVGFKLPLFTNQFYKERGVDGSVDVFYKRNFSIYFNYM 252
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 82.0 bits (201), Expect = 4e-17
Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 41/184 (22%)
Query: 426 SSQNNNGALNGLGVQVGYKQFFGESKRW-GLRYYGFFDYNHGYIKSSFFNSSSDIWTYGG 484
S + L GL ++G F G + +W G R YGF D+ + S ++ +++ TYGG
Sbjct: 43 SDWRHGNDLYGLNFKLG---FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGG 96
Query: 485 GSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQ 544
G DL+VN+I +K ++GL GG+QLAG TW+ PY VN T FQ
Sbjct: 97 GGDLIVNLI------PLDKFALGLIGGVQLAGNTWM-----------FPYD--VNQTRFQ 137
Query: 545 FLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNY 604
FL+NLG R + + SA E G+K P + + R YS Y++Y
Sbjct: 138 FLWNLG-------GRMRVGDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDY 182
Query: 605 VFAY 608
VF +
Sbjct: 183 VFTF 186
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 78.6 bits (192), Expect = 4e-16
Identities = 74/272 (27%), Positives = 107/272 (39%), Gaps = 62/272 (22%)
Query: 393 GQSNYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNN-----------------NGALN 435
GQ + ++ LNQA+ N+ F I N NG
Sbjct: 38 GQGSIGEKASAENALNQAINNAKNSLFPNTKAIRDVQNALNAVKDSNKIANRFAGNGGSG 97
Query: 436 GL--GVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNII 493
G+ + +GYK F G+ + G R+ FF Y G + S + YG +DLL+N
Sbjct: 98 GIFNELSLGYKYFLGKKRIIGFRHSLFFGYQLGGVGSVPGSGLIAFLPYGFNTDLLINWT 157
Query: 494 NDS------ITRKNNKLSV---------------------------GLFGGIQLAGTTWL 520
ND + R+ LS+ GL G++L +TW
Sbjct: 158 NDKRASQEYVERRVKGLSIFYKDMTGRTLDADTLKRASRHIIRKSSGLVIGMELGASTWF 217
Query: 521 NSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTN---LATARKKDSEHSAQHGIELGIKI 577
S NLT FN S + FQ G+R + R D + +ELG+K+
Sbjct: 218 ASN--NLTPFNQVKSRTI----FQLQGKFGVRFSSDEYDIDRYGDENYLGGSSVELGVKV 271
Query: 578 PTITTNYYS-FLGTQLQYRRLYSVYLNYVFAY 608
P NYYS G +L Y+R+ SVYLNY + +
Sbjct: 272 PAFKVNYYSDDYGDKLDYKRVVSVYLNYTYNF 303
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 77.8 bits (190), Expect = 7e-16
Identities = 75/237 (31%), Positives = 105/237 (43%), Gaps = 53/237 (22%)
Query: 399 INPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQF--FGESKRWGLR 456
+N Q+ N +Q + + S +P K +S NGLGVQVGYK E+K +G R
Sbjct: 67 LNLSQRFNKSQIIFSDSLSPVFKNSYVS--------NGLGVQVGYKWVGKHEETKWFGFR 118
Query: 457 YYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAG 516
+ F+D + + S + S I TYG DLL+N N +K G GI AG
Sbjct: 119 WGLFYDLSAS-LYGSQESQSIIISTYGTYMDLLLNAYN------GDKFFAGFNLGIAFAG 171
Query: 517 T-TWLNSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGI 575
L+ + T N + KVN FQFL +LG+R +EH+ Q G GI
Sbjct: 172 VYDRLSDALLYQTLLQNTFGGKVNLNGFQFLVDLGVRLG--------NEHN-QFG--FGI 220
Query: 576 KIPTITTNYYSFLGT------------------------QLQYRRLYSVYLNYVFAY 608
KIPT N+Y + Q+ +RR YSVY NY +++
Sbjct: 221 KIPTYYFNHYYSMNNISNNSENVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF 277
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 50.4 bits (119), Expect = 1e-07
Identities = 51/189 (26%), Positives = 89/189 (46%), Gaps = 28/189 (14%)
Query: 417 NPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSS 476
NP++K ++S+ + L GL + GY+++F LR+YG +Y G +K +S
Sbjct: 128 NPYEKFELLSNIQASPLLYGL--RSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKSDSL 182
Query: 477 SDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSA 536
+ T + L ++++ D K + ++G+FGG+ G W N Y NL YS
Sbjct: 183 ASYQT----ASLNIDLLMDKPIDKEKRFALGIFGGV---GVGW-NGMYQNLKEIRG-YS- 232
Query: 537 KVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRR 596
+ NA F + NLG+ L + +H EL +K+P + +FL +
Sbjct: 233 QPNA--FGLVLNLGVSMTL----------NLKHRFELALKMPPLKETSQTFL-YYFKSTN 279
Query: 597 LYSVYLNYV 605
+Y + NY+
Sbjct: 280 IYYISYNYL 288
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 49.3 bits (116), Expect = 3e-07
Identities = 42/145 (28%), Positives = 66/145 (44%), Gaps = 30/145 (20%)
Query: 389 APAAGQSNYQINPEQQSNLN-QALAAMSNNPFKKVGMISSQNNNGALN----------GL 437
A Q+NY +N ++LN Q LA + +K + SS N+ N G+
Sbjct: 456 ANLGSQTNYNLN----ASLNTQDLANSMLSTIQKTFVTSSVTNHHFSNASQSFRSPILGV 511
Query: 438 GVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSI 497
++GY+ +F + GL YYG YN+ + N +YGGG DLL++ I
Sbjct: 512 NAKIGYQNYFNDFI--GLAYYGIIKYNY----AKAVNQKVQQLSYGGGIDLLLDFITTYS 565
Query: 498 ---------TRKNNKLSVGLFGGIQ 513
T++N S G+FGG++
Sbjct: 566 NKNSPTGIQTKRNFSSSFGIFGGLR 590
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 49.3 bits (116), Expect = 3e-07
Identities = 51/242 (21%), Positives = 88/242 (36%), Gaps = 50/242 (20%)
Query: 386 DKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQ 445
DK++ G S Q++ Q + + N PF +V +I GYKQ
Sbjct: 68 DKSSHYYGTSVVQMSWLQSREKFENHSKYRNIPFAEVSLI---------------YGYKQ 112
Query: 446 FFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLS 505
FF + + +G R+Y DY +G+ F + + S + + + RK ++
Sbjct: 113 FFPKKEHYGFRFYVSLDYAYGF----FLKNKGALGDSLRASSQIPKSYREKLQRKETFIN 168
Query: 506 VGLFG----------------GIQLAGTTWLNSQYVNLTAFNNPYSAKVNA---TNFQFL 546
+G G+ G TW + F +N FQ +
Sbjct: 169 AIFYGVGADFLYKRAFGTLILGVNFVGETW----FYETKIFKQWAKDSLNTYRPNMFQVM 224
Query: 547 FNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVF 606
N+G R + + IE G +IP + +Y+ L ++R SVYL +
Sbjct: 225 LNVGYRYRFSRYK--------NWAIEFGARIPFLINDYFKTPLYTLHFKRNISVYLTSTY 276
Query: 607 AY 608
+
Sbjct: 277 DF 278
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 49.3 bits (116), Expect = 3e-07
Identities = 42/145 (28%), Positives = 66/145 (44%), Gaps = 30/145 (20%)
Query: 389 APAAGQSNYQINPEQQSNLN-QALAAMSNNPFKKVGMISSQNNNGALN----------GL 437
A Q+NY +N ++LN Q LA + +K + SS N+ N G+
Sbjct: 445 ANLGSQTNYNLN----ASLNTQDLANSMLSTIQKTFVTSSVTNHHFSNASQSFRSPILGV 500
Query: 438 GVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSI 497
++GY+ +F + GL YYG YN+ + N +YGGG DLL++ I
Sbjct: 501 NAKIGYQNYFNDFI--GLAYYGIIKYNY----AKAVNQKVQQLSYGGGIDLLLDFITTYS 554
Query: 498 ---------TRKNNKLSVGLFGGIQ 513
T++N S G+FGG++
Sbjct: 555 NKNSPTGIQTKRNFSSSFGIFGGLR 579
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 48.9 bits (115), Expect = 4e-07
Identities = 31/95 (32%), Positives = 46/95 (47%), Gaps = 13/95 (13%)
Query: 426 SSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGG 485
SS+N + G+ V++GY+ +F + GL YYG YN+ S YGGG
Sbjct: 585 SSKNFRSPILGVNVKIGYQHYFND--YIGLAYYGIIQYNYAQANDEKIQQLS----YGGG 638
Query: 486 SDLLVNII-------NDSITRKNNKLSVGLFGGIQ 513
D+L + I D T+K S G+FGG++
Sbjct: 639 MDVLFDFITTYTNKKQDHPTKKVFASSFGVFGGLR 673
>ref|NP_224132.1| putative [Helicobacter pylori J99]
Length = 211
Score = 43.5 bits (101), Expect = 2e-05
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 456 RYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLA 515
RYY F DY + I + + ++++TYG G DL++ KN LF G+Q+A
Sbjct: 77 RYYFFMDYGN-VILNKRTGAQANMFTYGFGGDLIMEY------NKNPLYVFSLFYGMQVA 129
Query: 516 GTTWLNSQY---VNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIE 572
TW S++ + + + + +NF+ L +G + H A IE
Sbjct: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVL-----FHHDA--SIE 182
Query: 573 LGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVF 606
+GIK P Y S + RL+SV++++ F
Sbjct: 183 VGIKWP-FAFEYDS------PFVRLFSVFISHTF 209
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 42.7 bits (99), Expect = 3e-05
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 379 DIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLG 438
D L N A + S ++Q+L++ ++ +S+ L G+
Sbjct: 529 DFTNLSSQTNYLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGAPLLGVN 588
Query: 439 VQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSIT 498
+++GY+++F + GL YG YN+ + S YG G D+L + I +
Sbjct: 589 LKMGYQKYFNDYL--GLSSYGIIKYNYAQANNEKIQQLS----YGVGMDVLFDFITNYTN 642
Query: 499 RKNNK---------LSVGLFGGIQ-LAGTTWLNSQY 524
KN K S+G+FGG++ L + +L +QY
Sbjct: 643 EKNPKSNLTKKVFTSSLGVFGGLRGLYNSYYLLNQY 678
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 42.7 bits (99), Expect = 3e-05
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 429 NNNGALNGLGVQVGYKQFFGESKRWGL-RYYGFFDYNHGYIKSSFFNSSS----DIWTYG 483
N N L G + GY+ W RYY F DY + FN+ S +++TYG
Sbjct: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGN-----VLFNNDSTLQANMFTYG 92
Query: 484 GGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYVNLTA----------FNN 532
G D +V + I R F G+QLA TW LN++ +L F+N
Sbjct: 93 VGGDFMVAYAKNPINRW------AFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHN 146
Query: 533 PYSAKVNATNFQF 545
Y + QF
Sbjct: 147 TYFRAIGKFGVQF 159
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 36.6 bits (83), Expect = 0.002
Identities = 73/334 (21%), Positives = 108/334 (31%), Gaps = 68/334 (20%)
Query: 247 TGSQTNP--KFAKDIYTFAQNQKQV-ISYAQDIFNLFNSIPAEQYKYLEKAYLKIPNAGS 303
T S TNP K +F NQ V +S I N +I +E + Y +K Y S
Sbjct: 1555 TYSFTNPLNNALKITESFKNNQLSVTLSQIPGIKNTLYNIGSEIFNY-QKVYNNANGVYS 1613
Query: 304 TP---------TNPYRQVVNLNQEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIV 354
T+ + N NQ Q +N + N + + SV YN + N +
Sbjct: 1614 YSDDAQGVFYLTSSVKGYYNPNQSYQASGSNNTTKNNNLTSESSVISQTYNAQGNPISAL 1673
Query: 355 TAYND-------------AKTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINP 401
YN A L EI K+ N + + L D A Q I P
Sbjct: 1674 HVYNKGYNFSNIKALGQMALKLYPEIKKILGNDFSLSSLSNLKGD----ALNQLTKLITP 1729
Query: 402 EQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFF 461
N+N+ + +N+ + NNG L ++G GL Y
Sbjct: 1730 SDWKNINELIDNANNS-------VVQNFNNGTLIIGATKIGQTDTNSAVVFGGLGYQKPC 1782
Query: 462 DYNH----------------------GYIKSSF---------FNSSSDIWTYGGGSDLLV 490
DY GYI ++F S + W GG + +
Sbjct: 1783 DYTDIVCQKFRGTYLGQLLESISADLGYIDTTFNAKEIYLTGTLGSGNAWGTGGSASVTF 1842
Query: 491 NIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQY 524
N I + N +S G + G +N +
Sbjct: 1843 NSQTSLILNQANIVSSQTDGIFSMLGQEGINKVF 1876
Score = 34.7 bits (78), Expect = 0.007
Identities = 64/307 (20%), Positives = 112/307 (35%), Gaps = 49/307 (15%)
Query: 350 QAEIVTAYNDAKTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQ 409
QA+ V N ++S S + N +N ++ ++ Q + +N NLNQ
Sbjct: 1309 QAKSVLFDNSNLSVSVGTSSIKANAINLSQNASINASNHSTLELQGDLNLNDTSSLNLNQ 1368
Query: 410 ALAAMSNNPF--KKVGMISSQ----NNNGALNGLGVQ---------------VGYKQFFG 448
+ +SNN +I+S N NGA+N V + F
Sbjct: 1369 SAINVSNNATINDYASLIASNGSHLNFNGAVNFNSANITTSLSSSSIVFKGAVSLRGQFN 1428
Query: 449 ESKRWGLRYYG---------FFDYNHGYIKSSF-FNSSSDIWTYGGGSDLLVNIINDSIT 498
S L + G F Y++ + +S F+ + DI L+N N S+
Sbjct: 1429 LSNNSSLDFQGSSAITSNTAFNFYDNAFSQSPITFHQALDIKVPLSLGGNLLNPNNSSVL 1488
Query: 499 R-KNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNATNFQFLFNLGLRTNLAT 557
KN++L G + +A L+ N N A +N ++ + G+R N
Sbjct: 1489 NLKNSQLVFSDQGSLNIANIDLLSDLNGNKNRVYNIIQADMNGNWYERINFFGMRINDGI 1548
Query: 558 ARKKDSEHSAQHGIELGIK----------------IPTITTNYYSFLGTQLQYRRLYSVY 601
K+ +S + + +K IP I Y+ Y+++Y+
Sbjct: 1549 YDAKNQTYSFTNPLNNALKITESFKNNQLSVTLSQIPGIKNTLYNIGSEIFNYQKVYN-N 1607
Query: 602 LNYVFAY 608
N V++Y
Sbjct: 1608 ANGVYSY 1614
Score = 31.6 bits (70), Expect = 0.061
Identities = 37/144 (25%), Positives = 62/144 (42%), Gaps = 18/144 (12%)
Query: 400 NPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYG 459
N + +S L++ LAA K +G I Q + LG + G +G S+ W +
Sbjct: 2056 NQQIKSVLDKVLAA------KGLGSIYEQGLGDLIPNLGKK-GIFAPYGLSQVWQKGDFS 2108
Query: 460 FFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGG-IQLAGTT 518
F + ++++S F++++ G L N N I NN ++ G + L
Sbjct: 2109 FNAQGNVFVQNSTFSNAN-------GGTLSFNAGNSLIFAGNNHIAFTNHSGTLNLLSNQ 2161
Query: 519 WLNSQYVNLTAFNNPYSAKVNATN 542
N +N+T N K+NATN
Sbjct: 2162 VSN---INVTMLNASNGLKINATN 2182
Score = 25.4 bits (54), Expect = 4.4
Identities = 49/214 (22%), Positives = 78/214 (35%), Gaps = 30/214 (14%)
Query: 330 GNRVDAALSVARDVYNLKSNQAEIVTAYNDAKTLSEEISKLPHNQVNTKDIVTLPYDKNA 389
GNR+ + + + L+ T YN A N N + + D A
Sbjct: 1193 GNRISSGGGASLNFNGLQGILLTNATLYNRAAGTQSSSMNFVSNSANIQAQNSYFIDDTA 1252
Query: 390 PAAGQSNYQINPEQQSNLNQALAAMSNNPFK-KVGMISSQNNNGALNGLGVQVGYKQFFG 448
G N+ N NL+ SN+ F+ VG S A+N + F
Sbjct: 1253 QNKGNPNFSFN---ALNLD-----FSNSSFRGYVGQTQSVFKFNAVNAIS--------FT 1296
Query: 449 ESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIIN---DSITRKNNKLS 505
S Y KS F+ +S++ G S + N IN ++ +N +
Sbjct: 1297 NSSNLSSGLYQM------QAKSVLFD-NSNLSVSVGTSSIKANAINLSQNASINASNHST 1349
Query: 506 VGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVN 539
+ L G + L T+ LN +N +A N +A +N
Sbjct: 1350 LELQGDLNLNDTSSLN---LNQSAINVSNNATIN 1380
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 29.3 bits (64), Expect = 0.30
Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 3/37 (8%)
Query: 472 FFNSSSDIWTYGG-GSDLLVNIINDSITR--KNNKLS 505
+FN++S + GG G DLLVN + D + R NN LS
Sbjct: 3104 YFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIGNNTLS 3140
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 27.3 bits (59), Expect = 1.1
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 10 NLNEKYEQLSQSLAQLASLKKSIQTANN--IQAVNNA 44
NL ++ ++L+ L QL S +KS++ NN QA+ N+
Sbjct: 206 NLEKENQRLTDKLKQLESAQKSLENTNNQLRQALENS 242
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 26.6 bits (57), Expect = 2.0
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 479 IWTYGGGSDLLVNIINDSITRKNNKLSVGL--FGGIQLAGTTWLNSQYVNLTA----FNN 532
I + G G ++ + ++ K + V L G+++ T + QY + N
Sbjct: 267 IGSTGSGKSTFISFLIANLLTKYDMSVVALDRMNGLEIM-TDFFEGQYNTANTDGGFYIN 325
Query: 533 PYSAKVNATNFQFLFN-LGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQ 591
P+S K + N QFL N + N+ + ++D++ S I + + Y+++G Q
Sbjct: 326 PFSLKDSEENRQFLANWIKFMLNIDSDNQQDNKASQ--------SIDKVIRDTYNYMGDQ 377
Query: 592 LQYRRLYSVYLN 603
L + N
Sbjct: 378 KNQINLLEIAKN 389
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 26.2 bits (56), Expect = 2.6
Identities = 22/74 (29%), Positives = 37/74 (49%), Gaps = 7/74 (9%)
Query: 471 SFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAF 530
SF N+S +T GGS + ++S++ +++L+ G +Q + N+Q V F
Sbjct: 785 SFSNASFSGFTNPGGSSTISTNASNSLSFTDSRLNGGAIYNLQANSLIFNNTQAV----F 840
Query: 531 NNPYS---AKVNAT 541
N YS + NAT
Sbjct: 841 NVLYSRGTSNFNAT 854
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.8 bits (55), Expect = 3.3
Identities = 17/62 (27%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Query: 12 NEKYEQLSQSLAQLASLKKSIQTA---NNIQAVNNALSDLKSFASNNHTNKETSPIYNTA 68
N+ + +QSL + K + N QA+ N +++ K+ A+N +N +T I N
Sbjct: 159 NQITKNKTQSLEAITQAKNNANNEISNNQTQAITN-ITEAKTNANNEISNNQTQAITNIN 217
Query: 69 QA 70
+A
Sbjct: 218 EA 219
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 25.8 bits (55), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 216 NNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQTNPK 254
N + + IPI+ + SN ++ SL+A S++NPK
Sbjct: 270 NPLTSKIPIVVNSSMSGSSNEDMARSLKADDFISKSNPK 308
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.0 bits (53), Expect = 5.7
Identities = 21/97 (21%), Positives = 40/97 (40%), Gaps = 5/97 (5%)
Query: 225 LQQAVTLSQSNHTLSASLQAQATGSQTNPKFAKDIYTFAQNQKQV-----ISYAQDIFNL 279
L+ TLSQ + ++++QA T NP A D Q + + A++ NL
Sbjct: 184 LKDIQTLSQKHDLNASNIQAATTPENKNPLNASDHLALKTTQASINHTLTKNDAKNTANL 243
Query: 280 FNSIPAEQYKYLEKAYLKIPNAGSTPTNPYRQVVNLN 316
+ + + + K + P T P ++ + +N
Sbjct: 244 SSVLQSLEKKEPQNKEHANPPNNEKKTPPLKEALQMN 280
>ref|NP_223550.1| putative [Helicobacter pylori J99]
Length = 95
Score = 25.0 bits (53), Expect = 5.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 267 KQVISYAQ-DIFNLFNSIPAEQYKYLEK 293
K Y+Q +FN NSI A+Q + LEK
Sbjct: 7 KDYTKYSQKQLFNFLNSIKAKQKRALEK 34
>ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter pylori J99]
Length = 119
Score = 25.0 bits (53), Expect = 5.7
Identities = 16/70 (22%), Positives = 27/70 (37%)
Query: 372 HNQVNTKDIVTLPYDKNAPAAGQSNYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNN 431
H V T + +S I+P+Q + L+ N K++G + + N
Sbjct: 14 HASVQTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYN 73
Query: 432 GALNGLGVQV 441
+ GL V V
Sbjct: 74 DTIKGLVVSV 83
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.0 bits (53), Expect = 5.7
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 120 NKETYDKMKALAENLQKAQGNLCALSECPSDQLNGNNGNKTSMTKALETAQQLMDLIA 177
N YD++K ++L+K+ L + + L +GNK M + Q ++ A
Sbjct: 604 NTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFA 661
Score = 24.6 bits (52), Expect = 7.4
Identities = 14/64 (21%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
Query: 3 KNTGELKNLNEKYEQLSQSLAQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKETS 62
KNTG + + + L +SL + L+K + A N+++ + + +++ + N E
Sbjct: 603 KNTGNYDEVKQAQKDLEKSLKKRERLEKDV--AKNLESKSGNKNKMEAKSQANSQKDEIF 660
Query: 63 PIYN 66
+ N
Sbjct: 661 ALIN 664
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 25.0 bits (53), Expect = 5.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 285 AEQYKYLEKAYLKIPNAGSTPTNPYRQVVNLNQEVQTIKNNVSYY 329
++ Y LE+A P NPY V+N Q K +SYY
Sbjct: 106 SKAYGDLEQALKDNPLYKKLLPNPYAYVLNQETFTQEDKERLSYY 150
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 558 ARKKDSEHSAQHGIELGIKIPTITT 582
AR K+ EH + G +L IK P T
Sbjct: 245 ARVKEDEHFKREGCDLFIKAPVFFT 269
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 24.3 bits (51), Expect = 9.7
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 340 ARDVYN---LKSNQAEIVTAYNDAKTLSEEISKLPHNQVNTKDIVTLPYDKNAPAAGQSN 396
ARD N ++ Q E T KT E+ Q ++ +K + ++N
Sbjct: 113 ARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETN 172
Query: 397 YQINPEQQSNLNQALAAMSNNPFKKVGMISSQN-----NNGALNGLGVQVG 442
QI EQ+ + +NN K + + QN N + LG++ G
Sbjct: 173 NQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAG 223
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 24.3 bits (51), Expect = 9.7
Identities = 15/59 (25%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Query: 317 QEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIVTAYNDAKTLSEEI-SKLPHNQ 374
+ TIK Y N+ D AL ++ + N ++ + K + E + SK+ NQ
Sbjct: 309 ESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQ 367
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 166 LETAQQLMDLIANTKTAMMWKNIVIAGVTNRPGGA 200
++ AQ L+D I +K +W+ I G+ + GA
Sbjct: 479 IKKAQNLLDAIQKSKNPPLWRLINALGIEHIGKGA 513
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,051
Number of Sequences: 1491
Number of extensions: 29194
Number of successful extensions: 239
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 75
length of query: 608
length of database: 494,079
effective HSP length: 83
effective length of query: 525
effective length of database: 370,326
effective search space: 194421150
effective search space used: 194421150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)