BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644704|ref|NP_206874.1| lipoprotein signal
peptidase (lspA) [Helicobacter pylori 26695]
(157 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222791.1| LIPOPROTEIN SIGNAL PEPTIDASE [Helicobacter... 295 5e-82
ref|NP_222734.1| putative [Helicobacter pylori J99] 27 0.34
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 26 0.57
ref|NP_223690.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 24 1.7
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 24 1.7
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 24 2.2
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 23 2.8
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 23 4.9
ref|NP_223120.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_222947.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_224077.1| putative [Helicobacter pylori J99] 22 6.3
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 22 6.3
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 22 6.3
ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99] 22 8.3
>ref|NP_222791.1| LIPOPROTEIN SIGNAL PEPTIDASE [Helicobacter pylori J99]
Length = 163
Score = 295 bits (754), Expect = 5e-82
Identities = 148/156 (94%), Positives = 154/156 (97%)
Query: 1 MLKTTKKSLLVFMGVFFLIFGVDQAIKYAILEGFRYESLMIDIVLVFNKGVAFSLLSFLE 60
ML TT+KSLLVFMGVFFLIFGVDQAIK+AILEGF YESL+IDIVLVFNKGVAFSLLSFLE
Sbjct: 1 MLNTTQKSLLVFMGVFFLIFGVDQAIKHAILEGFHYESLVIDIVLVFNKGVAFSLLSFLE 60
Query: 61 GGLKYLQILLILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHY 120
GGLKYLQILLILGLFIFLMRQ+ELFK+HAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHY
Sbjct: 61 GGLKYLQILLILGLFIFLMRQKELFKSHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHY 120
Query: 121 GFDFAIFNFADVMIDVGVGVLLLKQFFFKQKQNKIK 156
GFDFAIFNFADVMIDVGVGVLLL+QFFFKQKQNKIK
Sbjct: 121 GFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIK 156
>ref|NP_222734.1| putative [Helicobacter pylori J99]
Length = 275
Score = 26.6 bits (57), Expect = 0.34
Identities = 21/56 (37%), Positives = 26/56 (45%), Gaps = 7/56 (12%)
Query: 97 GAGVSNVLDRFVHGGVVDYVYYHYGFDFAIF-NFADVMIDVGVGVLLLKQFFFKQK 151
G G +DRFV+GGV + F A F + +V G LLK FF QK
Sbjct: 128 GIGQKLPIDRFVYGGVCN------NFSIASFLKYDNVWHIYGENSKLLKYEFFYQK 177
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 25.8 bits (55), Expect = 0.57
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 53 FSLLSFLEGGLKYLQILL--ILGLFIFLMRQRELFKNHA 89
FSL L+G L L++ L LG FIF + EL NHA
Sbjct: 134 FSLKKILDGSLITLKVFLAFFLGFFIFSLFLGEL--NHA 170
>ref|NP_223690.1| putative [Helicobacter pylori J99]
Length = 164
Score = 24.6 bits (52), Expect = 1.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 123 DFAIFNFAD-VMIDVGVGVLLLKQFFFKQKQNK 154
DF F ++ VM D+ L K+F F+ K+NK
Sbjct: 72 DFDAFLLSEAVMSDMPAKALFHKEFLFQSKENK 104
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 24.3 bits (51), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 67 QILLILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNV 103
Q L LGL + L R ++ +HA + GM G + +
Sbjct: 632 QFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTI 668
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 24.3 bits (51), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 67 QILLILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNV 103
Q L LGL + L R ++ +HA + GM G + +
Sbjct: 632 QFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTI 668
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 23.9 bits (50), Expect = 2.2
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 89 AIEFGMVFGAGVS-NVLDRFVHGGVVDYVYYHYGF 122
AI FG+ G+ V++Y+ YHYGF
Sbjct: 804 AINFGIALHKGLEYQYAYNIPKQSVLEYLNYHYGF 838
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 23.5 bits (49), Expect = 2.8
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 9/56 (16%)
Query: 52 AFSLLSFLEGGLKYLQILLILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNVLDRF 107
+FS ++++ GG+ L L LG+F F L+K ++ A SN + RF
Sbjct: 90 SFSWVNYIAGGIVILFGLHFLGVFRFAF----LYKTQSVGL-----ASKSNSMQRF 136
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 22.7 bits (47), Expect = 4.9
Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 9/63 (14%)
Query: 27 KYAILEGFRYESLMIDIVLVFNKGVAFSLLSFLEGGLKYLQILLILGLFIFLMRQRELFK 86
+YAILE + E ++ +++L F K S S+ ILLI F +M L K
Sbjct: 265 RYAILENYETEGVLEEMML-FLKAKLLSPDSY--------SILLIERFFKIIMSSLSLLK 315
Query: 87 NHA 89
A
Sbjct: 316 EGA 318
>ref|NP_223120.1| putative [Helicobacter pylori J99]
Length = 416
Score = 22.7 bits (47), Expect = 4.9
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 85 FKNHAIEFGMVFGAGVSNV-LDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVG 139
F N +I + G V LD V G DY Y F ++ + D+ D+G G
Sbjct: 336 FANSSISGYVFLGLKTKRVRLDAMVAFG--DYQEYSLMSSFRVWTYRDLSFDMGGG 389
>ref|NP_222947.1| putative [Helicobacter pylori J99]
Length = 131
Score = 22.7 bits (47), Expect = 4.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 10 LVFMGVFFLIFGVDQAIKYAILEGFR 35
LVF+ F L +G+D+ ++ E FR
Sbjct: 12 LVFLKAFGLDYGIDKTLELKKDEAFR 37
>ref|NP_224077.1| putative [Helicobacter pylori J99]
Length = 377
Score = 22.3 bits (46), Expect = 6.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 9 LLVFMGVFFLIFGVDQAIKYAILEGF 34
LLVF+ F I G AIKY + GF
Sbjct: 273 LLVFIADAFAILGGMFAIKYQLDLGF 298
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 22.3 bits (46), Expect = 6.3
Identities = 17/57 (29%), Positives = 28/57 (48%), Gaps = 5/57 (8%)
Query: 70 LILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAI 126
L LG FL ++R + H++ FG G GV +V G++ ++ Y + D I
Sbjct: 103 LSLGYKYFLGKKRIIGFRHSLFFGYQLG-GVGSV----PGSGLIAFLPYGFNTDLLI 154
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 22.3 bits (46), Expect = 6.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 67 QILLILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNV 103
Q L LGL + L + ++ +HA + G+ G + +
Sbjct: 604 QFLFNLGLRMNLAKNKKKASDHAAQHGVELGVKIPTI 640
>ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99]
Length = 377
Score = 21.9 bits (45), Expect = 8.3
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 63 LKYLQILLILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYH 119
++ L+ L + G+F L K HA VF A + +LD+ +++ Y H
Sbjct: 151 IRALKGLEVEGIFTHLSNADSNIKTHAKNQMKVFNAFLEQLLDQ-----KIEFQYRH 202
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.336 0.153 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,039
Number of Sequences: 1491
Number of extensions: 8830
Number of successful extensions: 58
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 16
length of query: 157
length of database: 494,079
effective HSP length: 71
effective length of query: 86
effective length of database: 388,218
effective search space: 33386748
effective search space used: 33386748
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)