BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645350|ref|NP_207524.1| hypothetical protein
[Helicobacter pylori 26695]
(101 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223385.1| putative [Helicobacter pylori J99] 149 2e-38
ref|NP_222975.1| putative [Helicobacter pylori J99] 29 0.022
ref|NP_222746.1| putative [Helicobacter pylori J99] 27 0.11
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.14
ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobac... 26 0.19
ref|NP_222847.1| putative [Helicobacter pylori J99] 26 0.19
ref|NP_224197.1| putative Outer membrane protein [Helicobac... 25 0.32
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 25 0.55
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 24 0.93
ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99] 23 1.2
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 23 1.6
ref|NP_223402.1| putative [Helicobacter pylori J99] 23 1.6
ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter py... 23 2.1
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 23 2.1
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 22 2.7
ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 22 2.7
ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99] 22 2.7
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 22 4.6
ref|NP_223209.1| cag island protein [Helicobacter pylori J99] 22 4.6
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 22 4.6
ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacte... 21 6.1
ref|NP_223783.1| putative [Helicobacter pylori J99] 21 6.1
ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacte... 21 6.1
ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANS... 21 6.1
ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [... 21 6.1
ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [H... 21 7.9
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 21 7.9
>ref|NP_223385.1| putative [Helicobacter pylori J99]
Length = 101
Score = 149 bits (375), Expect = 2e-38
Identities = 74/101 (73%), Positives = 84/101 (82%)
Query: 1 MFSKICSSLKLLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLI 60
MFSKIC+S KL NA KGF+ KRISSP+QS RI MVL IK+A + DP N A + LDL+
Sbjct: 1 MFSKICASFKLANAFKGFICKRISSPMQSTRITKMVLGIKDAFNDDKDPLNNACEALDLV 60
Query: 61 VGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEILK 101
V FKKE+PQDF+ELFEILK+LIQEYEQNPDEIKQNLKEILK
Sbjct: 61 VKFKKEHPQDFNELFEILKDLIQEYEQNPDEIKQNLKEILK 101
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 29.3 bits (64), Expect = 0.022
Identities = 11/30 (36%), Positives = 21/30 (69%)
Query: 52 KAGKTLDLIVGFKKEYPQDFDELFEILKEL 81
+ G + D+IVGF E +DF++ E+L+++
Sbjct: 291 EVGISTDIIVGFPNESDKDFEDTMEVLEKV 320
>ref|NP_222746.1| putative [Helicobacter pylori J99]
Length = 175
Score = 26.9 bits (58), Expect = 0.11
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 37 LDIKNALEGENDPSNKAGKTLDLIVGFKKEY-PQD 70
+++K E EN P+NK KTL V F + Y P+D
Sbjct: 39 VEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKD 73
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.6 bits (57), Expect = 0.14
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 4/43 (9%)
Query: 63 FKKEYPQDFD----ELFEILKELIQEYEQNPDEIKQNLKEILK 101
FKK+ FD E + +K++ ++Y DE + L EI+K
Sbjct: 295 FKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIK 337
>ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobacter pylori J99]
Length = 373
Score = 26.2 bits (56), Expect = 0.19
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 16 KGFLFKRISSPVQSARIANMVLDIKNALEGENDPSN 51
KGFL I P S + + L +KN+LE + +N
Sbjct: 323 KGFLVGAIRPPTVSKPLLRVSLSLKNSLEDTKELAN 358
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 26.2 bits (56), Expect = 0.19
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 62 GFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEILK 101
GFK Y +D DE EI+ L +E +N+K ILK
Sbjct: 82 GFKIHYAKDGDEANEIIYNLAKE---------KNIKRILK 112
>ref|NP_224197.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 314
Score = 25.4 bits (54), Expect = 0.32
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 32 IANMVLDIKNALEGENDPSNKAGKTLDLIV-GF----KKEYPQDFDELFEILKELIQEYE 86
++N ++D+ NA + D K ++ LIV GF K+Y Q F+ + K L +E++
Sbjct: 177 VSNRIIDLSNAAARDIDMVQKGTASVRLIVLGFGGVISKQYEQSFNANYS--KILHKEFK 234
Query: 87 QNPDE 91
E
Sbjct: 235 VGESE 239
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 24.6 bits (52), Expect = 0.55
Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 7/51 (13%)
Query: 55 KTLDLIVGFKKEYPQDFDELFEILKELI-------QEYEQNPDEIKQNLKE 98
KT L+ K+ Q F F + KE Q+ E N D+ K+NLKE
Sbjct: 149 KTQSLLKEIYKQCLQAFSPNFSLKKEGFENTPSDSQKKETNNDKEKENLKE 199
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 23.9 bits (50), Expect = 0.93
Identities = 10/22 (45%), Positives = 17/22 (76%)
Query: 77 ILKELIQEYEQNPDEIKQNLKE 98
ILK L +E +QN ++K+++KE
Sbjct: 191 ILKTLNEENKQNDKKLKRSIKE 212
>ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99]
Length = 459
Score = 23.5 bits (49), Expect = 1.2
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 63 FKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEI 99
FK+ Y D L+ L+ L EQ+P +++ +K +
Sbjct: 329 FKERYFGYDDALYACLRALELLLEQSPSDLENTIKNL 365
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 23.1 bits (48), Expect = 1.6
Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 7/61 (11%)
Query: 30 ARIANMVLDIKNALEGE--NDPSNKA-----GKTLDLIVGFKKEYPQDFDELFEILKELI 82
+R+ + +++NAL+ ND + G+ D + F K + DEL +LKE +
Sbjct: 618 SRLNLVTKEVRNALDNYRFNDATTLLYRFLWGEFCDWFIEFSKVENEAIDELGSVLKEAL 677
Query: 83 Q 83
+
Sbjct: 678 K 678
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.1 bits (48), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 76 EILKELIQEYEQNPDEIKQNLKE 98
EILK+ ++ Y Q+ + I NL+E
Sbjct: 72 EILKQALRIYSQSFEVISHNLQE 94
>ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter pylori J99]
Length = 66
Score = 22.7 bits (47), Expect = 2.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 51 NKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEILK 101
+K+ K L+ ++ KK ELFE+ +L NP+EIK+ + I +
Sbjct: 8 DKSIKELEELLHAKKA------ELFELRVKLKNMQLSNPNEIKKARRNIAR 52
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori
J99]
Length = 328
Score = 22.7 bits (47), Expect = 2.1
Identities = 12/27 (44%), Positives = 16/27 (58%), Gaps = 3/27 (11%)
Query: 63 FKKE---YPQDFDELFEILKELIQEYE 86
F KE Y Q F++ FE+ K+ I E E
Sbjct: 49 FAKEIHHYKQAFEKAFELKKKAIMELE 75
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 22.3 bits (46), Expect = 2.7
Identities = 16/81 (19%), Positives = 36/81 (43%), Gaps = 1/81 (1%)
Query: 21 KRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVG-FKKEYPQDFDELFEILK 79
K + ++ + + IKN + + ++ K +L KK+ DFD+L +
Sbjct: 122 KTLCKQLKISNFRASISQIKNGMMDLSVQDSECYKAYELYQNALKKDNLVDFDDLLCLSL 181
Query: 80 ELIQEYEQNPDEIKQNLKEIL 100
+++Q+ E+ E + I+
Sbjct: 182 KILQDNEKLAKETSERYHYIM 202
>ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 225
Score = 22.3 bits (46), Expect = 2.7
Identities = 15/54 (27%), Positives = 25/54 (45%), Gaps = 16/54 (29%)
Query: 9 LKLLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVG 62
L LL + KG++F R S A+E E+ + K++D+I+G
Sbjct: 160 LSLLISKKGYVFSRESI----------------AIESESINPESSNKSIDVIIG 197
>ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99]
Length = 426
Score = 22.3 bits (46), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 60 IVGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEI 99
++GF + +D +ILK L E Q ++ + L EI
Sbjct: 309 LMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEI 348
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 21.6 bits (44), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 73 ELFEILKELIQEYEQNPDEI 92
EL + LKEL YE++P E+
Sbjct: 3 ELEKELKELFDIYEKSPYEL 22
>ref|NP_223209.1| cag island protein [Helicobacter pylori J99]
Length = 268
Score = 21.6 bits (44), Expect = 4.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 79 KELIQEYEQNPDEIKQNL 96
KEL ++Y QN DE+ +
Sbjct: 240 KELFEKYFQNIDEVTNKM 257
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 21.6 bits (44), Expect = 4.6
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 72 DELFEILKELIQEYEQNPDEIKQNLKEILK 101
+++ + K L+Q+ EQ K N +EIL+
Sbjct: 193 EKINQYYKTLLQDKEQEYTTRKNNQREILE 222
>ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
Length = 271
Score = 21.2 bits (43), Expect = 6.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 68 PQDFDELFEILKELIQE 84
P+ F +FE++KE ++E
Sbjct: 169 PKVFSSVFEVIKEPLKE 185
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 21.2 bits (43), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 78 LKELIQEYEQNPDEIKQNLKEILK 101
L E IQ + NP E+ ++ KE+L+
Sbjct: 119 LIENIQREDLNPLELARSYKELLE 142
>ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacter pylori J99]
Length = 360
Score = 21.2 bits (43), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 17 GFLFKRISSPVQSARIANMVL 37
GFL K VQ A+ A+MVL
Sbjct: 59 GFLLKAHKEMVQLAKQADMVL 79
>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 329
Score = 21.2 bits (43), Expect = 6.1
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 70 DFDELFEILKELIQEYEQNPDEIKQNLKE 98
D E E + + Y D +K+NLKE
Sbjct: 44 DDKETIEFVSQSSWRYFATHDPLKENLKE 72
>ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [Helicobacter pylori J99]
Length = 332
Score = 21.2 bits (43), Expect = 6.1
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 6/51 (11%)
Query: 47 NDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLK 97
ND S + G+ L L +GF E + L +IL+ + +E K NLK
Sbjct: 76 NDVSVQGGEPLYLNMGFILEEGLEIPLLKQILQSIQKEL------FKANLK 120
>ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [Helicobacter pylori J99]
Length = 405
Score = 20.8 bits (42), Expect = 7.9
Identities = 8/29 (27%), Positives = 18/29 (61%)
Query: 27 VQSARIANMVLDIKNALEGENDPSNKAGK 55
++S ++ + V+ + +A+ GE D + GK
Sbjct: 26 LESVKLGHQVVVVVSAMSGETDRLLEFGK 54
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 20.8 bits (42), Expect = 7.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 78 LKELIQEYEQNPDEIKQNLKEI 99
LK+L Y++ ++ +NL EI
Sbjct: 27 LKQLDNTYQETNQQVLKNLDEI 48
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.137 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,119
Number of Sequences: 1491
Number of extensions: 5357
Number of successful extensions: 34
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 27
length of query: 101
length of database: 494,079
effective HSP length: 65
effective length of query: 36
effective length of database: 397,164
effective search space: 14297904
effective search space used: 14297904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 42 (20.8 bits)