BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645352|ref|NP_207526.1| hypothetical protein
[Helicobacter pylori 26695]
(118 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223387.1| putative [Helicobacter pylori J99] 144 7e-37
ref|NP_223618.1| putative [Helicobacter pylori J99] 33 0.003
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 28 0.070
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 27 0.16
ref|NP_224153.1| putative [Helicobacter pylori J99] 25 0.77
ref|NP_223714.1| putative [Helicobacter pylori J99] 24 1.0
ref|NP_223013.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 23 1.7
ref|NP_223650.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 23 2.9
ref|NP_222890.1| putative [Helicobacter pylori J99] 23 2.9
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 22 3.8
ref|NP_224096.1| putative [Helicobacter pylori J99] 22 3.8
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 22 3.8
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 5.0
ref|NP_223106.1| putative proline peptidase [Helicobacter p... 22 5.0
ref|NP_222813.1| putative [Helicobacter pylori J99] 22 5.0
ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [He... 22 6.5
ref|NP_223725.1| putative outer membrane protein [Helicobac... 22 6.5
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 22 6.5
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 144 bits (363), Expect = 7e-37
Identities = 76/111 (68%), Positives = 88/111 (78%), Gaps = 5/111 (4%)
Query: 13 IIAG----LVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIW 68
+IAG LVG+ SIW FF S Y++SQQRKEVDKNLHQICEKIVQDVKSR+ES K
Sbjct: 261 LIAGVGLALVGVGKSIWSFFDSDYKKSQQRKEVDKNLHQICEKIVQDVKSRIESYKNGAL 320
Query: 69 EKIEKLKANL-RPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE 118
IE+L A + VD+Y+RMKRQL+EAHE+L YIS+SIHL ISKQGACNEE
Sbjct: 321 GMIEELNAGFNKLVDHYERMKRQLEEAHEKLGYISNSIHLTISKQGACNEE 371
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 32.7 bits (73), Expect = 0.003
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 26 KFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYK 85
KF +S+ Q S K V ++ EK ++++K+ L+ KDI + EKL+ANL +
Sbjct: 54 KFLNSQLQNSL--KSVIESFDYSKEKALEEIKA-LDLGVKDIEKTYEKLRANLEEEYSSV 110
Query: 86 RMKRQLKEAHERLRYISHSIHLIISKQGACNEE 118
+ +K+ E +R + +I+K N E
Sbjct: 111 AVNSVVKKVIEEVRDQKPYLASLINKPNEFNSE 143
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 28.1 bits (61), Expect = 0.070
Identities = 19/62 (30%), Positives = 35/62 (55%), Gaps = 2/62 (3%)
Query: 43 KNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYK--RMKRQLKEAHERLRY 100
+ H + + + ++S L + ++DI + I+K+KA R +DN K + K L A +RL
Sbjct: 545 ERFHNLIDCNLSIIRSVLNTNERDIVKIIQKVKALKRFLDNPKNAQKKELLFSAFKRLAN 604
Query: 101 IS 102
I+
Sbjct: 605 IN 606
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 26.9 bits (58), Expect = 0.16
Identities = 15/53 (28%), Positives = 26/53 (48%)
Query: 21 ASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEK 73
+S W S Y+ ++ K L CE+I D+K E+++ I++K K
Sbjct: 246 SSLTWLEKKSEYRYFKKLKNEIPTLESECEEIENDLKRYYEAQETAIFKKFPK 298
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 24.6 bits (52), Expect = 0.77
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 35 SQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEA 94
S Q KE++ +QI + RL ++K+ + EK+EKL ++ K ++ + KE
Sbjct: 175 SYQHKELEHKKNQIIK--------RLNAQKERLKEKLEKL-------EDPKTLQLEAKEL 219
Query: 95 HERLRYISHSIHLI 108
+ + HLI
Sbjct: 220 QTQASLLLTYQHLI 233
>ref|NP_223714.1| putative [Helicobacter pylori J99]
Length = 248
Score = 24.3 bits (51), Expect = 1.0
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 46 HQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNY------KRMKRQLKEAHE 96
H+ C +V + + I++ + R D Y K++KR++K+AHE
Sbjct: 88 HEECVALVMLISPKASIENSPIYKNCYEAYVKQRIHDLYDFYIEGKKVKRKIKKAHE 144
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 23.9 bits (50), Expect = 1.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 56 VKSRLESRKKDIWEKIEKLK 75
VK RL+ RK+D EK EK K
Sbjct: 51 VKKRLDLRKQDSKEKEEKQK 70
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 23.5 bits (49), Expect = 1.7
Identities = 18/80 (22%), Positives = 40/80 (49%), Gaps = 16/80 (20%)
Query: 36 QQRKEVDKNLHQICEKIVQDVKSRL--ESRK--------------KDIWEKIEKLKANLR 79
+Q+ + D+ + Q +QD ++++ E+RK K++ EK ++++ +
Sbjct: 74 EQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQ 133
Query: 80 PVDNYKRMKRQLKEAHERLR 99
+R+KR+ EA RL+
Sbjct: 134 KEAEIERLKRENNEAESRLK 153
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 23.5 bits (49), Expect = 1.7
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 59 RLESRKKDIWEKIEKLKANLRPV--DNYKRMKRQLKEAHE 96
RL K + E EK+ +NL V D+ + M K H+
Sbjct: 477 RLSDMSKSVQETYEKMSSNLSSVVLDSNQSMDDYAKSGHQ 516
>ref|NP_223650.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 2.2
Identities = 22/105 (20%), Positives = 42/105 (39%), Gaps = 16/105 (15%)
Query: 28 FSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRM 87
F + R++ R D LH + + + L SR KD + +KL ++ +
Sbjct: 148 FDGEHTRTKARDLFD--LHFLAKHYEEHFNLDLASRLKDFSKDPDKLVSDYLVDVKLDAL 205
Query: 88 KRQLKEA--------------HERLRYISHSIHLIISKQGACNEE 118
Q+ + H++L SHS++ + +QG N +
Sbjct: 206 LNQIMDLEETALELGVMAQLIHKKLEKQSHSLNALQEQQGYSNND 250
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 22.7 bits (47), Expect = 2.9
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 12 RIIAGLVGIASSIWK 26
++ AGL+G+ S++W+
Sbjct: 504 QVPAGLIGVTSAVWQ 518
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 22.7 bits (47), Expect = 2.9
Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 11/78 (14%)
Query: 26 KFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSR------LESRKKDIWEKIEKLKANLR 79
K +S+ R K V+KNL E++ +VK++ ES K + +E LK +
Sbjct: 148 KSVASKIMRLDGVKHVEKNLKDNLEEMSDEVKNKGSIDNAKESFNKATDKGVEALKEKAK 207
Query: 80 PVDNYKRMKRQLKEAHER 97
+ K L+ H +
Sbjct: 208 DLP-----KNMLEPKHNK 220
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 22.3 bits (46), Expect = 3.8
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 28 FSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLES 62
FS ++ R EV+KN H + +++ Q + +S
Sbjct: 211 FSFSGLKNAVRLEVEKNAHNLNDEVKQKIGYHFQS 245
>ref|NP_224096.1| putative [Helicobacter pylori J99]
Length = 190
Score = 22.3 bits (46), Expect = 3.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 70 KIEKLKANLRPVDNYKRMKRQLKEAH 95
K + L P DN+++ QLK+ H
Sbjct: 15 KASRFLGYLMPFDNFEKTLLQLKKEH 40
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 22.3 bits (46), Expect = 3.8
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 57 KSRLESRKKDIWEKIEKLK 75
K LE KK++ KIEK K
Sbjct: 113 KKDLEKEKKELLNKIEKQK 131
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 21.9 bits (45), Expect = 5.0
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 40 EVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERL 98
E DK + Q + +++ E KK + E +K+N ++ K + LK+ E L
Sbjct: 51 ETDKIITQTAQLTQVEMQ---EENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENL 106
>ref|NP_223106.1| putative proline peptidase [Helicobacter pylori J99]
Length = 357
Score = 21.9 bits (45), Expect = 5.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 75 KANLRPVDNYKRMKRQLKEAHE 96
K L V +Y R KR +K HE
Sbjct: 107 KVVLEGVPSYHRQKRIIKNEHE 128
>ref|NP_222813.1| putative [Helicobacter pylori J99]
Length = 368
Score = 21.9 bits (45), Expect = 5.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 70 KIEKLKANLRPVDNYKRMKRQLKEA 94
KI+K N P + Y +KRQ+ A
Sbjct: 181 KIQKESQNRSPFELYSPLKRQILPA 205
>ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 318
Score = 21.6 bits (44), Expect = 6.5
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 51 KIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRM 87
K+ D K+ L D +E NL +DN + +
Sbjct: 209 KVDSDTKNNLNIILTDFSSLVESTTVNLNSLDNIQNL 245
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 21.6 bits (44), Expect = 6.5
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 12 RIIAGLVGIASSIWK 26
++ AGL+G+ +++W+
Sbjct: 517 QVPAGLIGVTTAVWQ 531
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 21.6 bits (44), Expect = 6.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 KDIWEKIEKLKANLRPVDNYKRMKRQLKEAHER 97
K+I E + +KA + K KR KEA +R
Sbjct: 23 KEISEADKVIKATKETKETKKEAKRLKKEAKQR 55
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,431
Number of Sequences: 1491
Number of extensions: 4551
Number of successful extensions: 28
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 21
length of query: 118
length of database: 494,079
effective HSP length: 67
effective length of query: 51
effective length of database: 394,182
effective search space: 20103282
effective search space used: 20103282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)