BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645353|ref|NP_207527.1| hypothetical protein
[Helicobacter pylori 26695]
(521 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223387.1| putative [Helicobacter pylori J99] 315 1e-87
ref|NP_223388.1| putative [Helicobacter pylori J99] 231 4e-62
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 39 2e-04
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 35 0.005
ref|NP_223322.1| putative [Helicobacter pylori J99] 33 0.018
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 32 0.039
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 32 0.051
ref|NP_223773.1| putative [Helicobacter pylori J99] 31 0.087
ref|NP_223192.1| cag island protein, DNA transfer protein [... 31 0.087
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 29 0.25
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 29 0.25
ref|NP_223610.1| putative [Helicobacter pylori J99] 29 0.33
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 29 0.33
ref|NP_223158.1| putative [Helicobacter pylori J99] 29 0.33
ref|NP_223710.1| putative [Helicobacter pylori J99] 28 0.43
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.57
ref|NP_223971.1| putative [Helicobacter pylori J99] 28 0.74
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 28 0.74
ref|NP_223614.1| putative [Helicobacter pylori J99] 28 0.74
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 28 0.74
ref|NP_222913.1| putative [Helicobacter pylori J99] 28 0.74
ref|NP_223762.1| putative [Helicobacter pylori J99] 27 0.96
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 27 0.96
ref|NP_222874.1| putative [Helicobacter pylori J99] 27 0.96
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 27 1.3
ref|NP_223412.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 2.1
ref|NP_223761.1| putative [Helicobacter pylori J99] 26 2.1
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 26 2.1
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 26 2.1
ref|NP_223038.1| putative [Helicobacter pylori J99] 26 2.1
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 26 2.1
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 26 2.8
ref|NP_223815.1| AMINO ACID ABC TRANSPORTER, ATP-BINDING PR... 26 2.8
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 26 2.8
ref|NP_222973.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_222782.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 25 3.7
ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter py... 25 3.7
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223629.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223176.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 25 3.7
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 25 3.7
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 25 4.8
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 25 4.8
ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pyl... 25 4.8
ref|NP_223770.1| putative [Helicobacter pylori J99] 25 4.8
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 25 4.8
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 4.8
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 25 4.8
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 25 4.8
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 25 4.8
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 25 4.8
ref|NP_224155.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter p... 25 6.2
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 25 6.2
ref|NP_223139.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_222877.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 24 8.2
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 24 8.2
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 24 8.2
ref|NP_223555.1| Hydrogenase expression/formation protein [... 24 8.2
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 24 8.2
ref|NP_222848.1| putative [Helicobacter pylori J99] 24 8.2
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 24 8.2
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 315 bits (808), Expect = 1e-87
Identities = 171/268 (63%), Positives = 208/268 (76%), Gaps = 4/268 (1%)
Query: 252 MKNILGKHYKGYKAVSAQVAFYGLSSALIPGTDFDKNKQKFLKDFKARELLYQSHFQQLG 311
MKNILG+HY GYK VSAQ AFYGLS ALIPGTDFDK KQKFLKDFKA ELLYQSHF+ L
Sbjct: 1 MKNILGEHYMGYKTVSAQAAFYGLSQALIPGTDFDKKKQKFLKDFKAGELLYQSHFKPLV 60
Query: 312 EFIAEELIKNSRAKIIQSNCNKALKVVEQLQKAIEITIEKRIDPMIKEAQEYQHEARYNL 371
EFIAEEL+KNSRAKIIQSNCNKALKVVE+LQ I+ TIEK+IDP IKE QE+Q EAR+NL
Sbjct: 61 EFIAEELLKNSRAKIIQSNCNKALKVVEELQNTIKTTIEKQIDPGIKETQEHQQEARFNL 120
Query: 372 DRSTDKFILNLTNSAFYEIDQFKSDLREKMYAHINKNIEDEECKEIFKNELIQGIETLHE 431
DRSTDKFI +L SAF +I+QF+ + R++M+ I + I + ECKEIF NEL Q L E
Sbjct: 121 DRSTDKFISDLEKSAFSKINQFEFNFRKEMHERIERGIGNNECKEIFGNELKQRKTKLIE 180
Query: 432 DIKWRFRECEKRFDGEIKEAIKQLEYRIKDSLAMLERI-SIDRDFNLNFDTDSGIDGTKL 490
DI+ RF+ECE++F G + + I+QLE R+KDSLA+++RI ++ + N NF+ DSGID L
Sbjct: 181 DIERRFKECEEQFRGSVGKNIEQLEERVKDSLAIIKRINNLGLNPNSNFNMDSGIDTIGL 240
Query: 491 ATSIGGLGLLGIFNAWNPMGWLALTAGL 518
+SIGGL LL + +G AL AG+
Sbjct: 241 FSSIGGLVLLLLTPV---VGEFALIAGV 265
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 231 bits (588), Expect = 4e-62
Identities = 131/216 (60%), Positives = 143/216 (65%), Gaps = 48/216 (22%)
Query: 1 MKNIYLDVKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEW 60
MK+IYLDV+ SI++LQ+IFKN D +E+LK+FNQEALEVFQKLERESLKELESLKNNEEW
Sbjct: 5 MKDIYLDVEKSIKDLQSIFKNADGRDEKLKRFNQEALEVFQKLERESLKELESLKNNEEW 64
Query: 61 ENFTIAFYGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNYQNDECKKQAIL 120
ENFTIAFYGETGAGKST IECLRMFFKEQSKV QQERFKRLYS YQ N+Q
Sbjct: 65 ENFTIAFYGETGAGKSTLIECLRMFFKEQSKVDQQERFKRLYSTYQYNHQ---------- 114
Query: 121 NELHSLQDGAIIGDGRSDFTLKTRSYSFQYNHQNFTLLDVPGIEGDEKKVIDQISNATQK 180
NF LLDVPGIEG EKKVIDQISNATQK
Sbjct: 115 ---------------------------------NFILLDVPGIEGSEKKVIDQISNATQK 141
Query: 181 AHAIFYVTK-----TPNPPQKGEEKKEGTIEKIQKQ 211
AHAIF + K KGE K+ I+KQ
Sbjct: 142 AHAIFMLPKRLILRKKEKKGKGERLKKSKNSLIRKQ 177
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 39.3 bits (90), Expect = 2e-04
Identities = 50/201 (24%), Positives = 84/201 (40%), Gaps = 29/201 (14%)
Query: 12 IENLQNIFKNTDNENERLKK--------FNQEALEVFQKLERESLKELESLKNNEEWENF 63
IEN + K + + ERL ++ + QK+ + +L L + +
Sbjct: 201 IENKDRLIKELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAKLYDLD----- 255
Query: 64 TIAFYGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNYQNDECKKQAILNEL 123
AFYG G K+ ++ F K++ F++++S N + DE KQAI+N
Sbjct: 256 IFAFYG--GNNKAVLVK----MFMRGGKIISSA-FEKIHS--LNGFDTDEAMKQAIINHY 306
Query: 124 HS---LQDGAIIGDGRSDFTLKTRSYSFQYNHQNFTLLDVPGIEGDEKKVIDQISNATQK 180
S L I+ S+ TLK + + L +P +GD+ +I+ A +
Sbjct: 307 QSHLPLMPEQILLSACSNETLKELQEFISHQYSKKIALSIPK-KGDKLALIE---IAMKN 362
Query: 181 AHAIFYVTKTPNPPQKGEEKK 201
A IF KT N + EE +
Sbjct: 363 AQEIFSQEKTSNEDRILEEAR 383
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 35.0 bits (79), Expect = 0.005
Identities = 41/154 (26%), Positives = 70/154 (44%), Gaps = 25/154 (16%)
Query: 286 DKNKQKFLK------DFKARELLYQ--SHFQQLGEFIAEELIKNSRAKIIQSNCNKALKV 337
+KN++K K +FK E L+ +H ++ I E + + K I S+ N + K+
Sbjct: 649 NKNERKTEKIKINKENFKKFETLWAGLNHQARIAYAIDSESLIDEIVKNINSSFNVSSKI 708
Query: 338 VEQLQKAIEITIEKRIDPMIKEAQEYQHEARYNLDRSTDKFILNLTNSAFYEIDQFKSDL 397
V +T K+++ M A+ E + S +FI L+N K L
Sbjct: 709 VS-------VTTHKKVETMGNNAKTEIFERKSACVWSLHEFISALSN---------KVKL 752
Query: 398 REKMYAHINKNIEDEECKEIFKNELIQGIETLHE 431
K A + +NI++ + EI KNE +G++ L E
Sbjct: 753 SFKSVAKVLENIDENKFNEIKKNEQ-EGLKRLEE 785
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 33.1 bits (74), Expect = 0.018
Identities = 37/179 (20%), Positives = 70/179 (38%), Gaps = 26/179 (14%)
Query: 164 EGDEKKVIDQISNATQKAHAIFYVTKTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWTI-- 221
EG K DQ+ + + + T N E K K ++Q TE+ T+
Sbjct: 240 EGHYKLYRDQLKEHLEMQELLRNILLT-NVDTSSETKMREYYNKHKEQFSIPTEIETVRY 298
Query: 222 -------FNKPINNPRAFKDGLIDGSEKESLKILNKEMKNILGKHYKGYKAVSAQVAFYG 274
+ + +P G+ +EK +K LN ++ + H +G S G
Sbjct: 299 TSTNQEDLERAMADPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQG----SFTPVMNG 354
Query: 275 LSSALIPGTDFDKNKQKFLKDFKARELLYQSHFQQLGEFIAEELIKNSRAKIIQSNCNK 333
I ++K+ + + + F Q +FIA++L++ S+ KI++ + K
Sbjct: 355 GGGQFITF---------YIKEKRGKN---EVSFSQAKQFIAQKLVEESKDKILEEHFEK 401
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 32.0 bits (71), Expect = 0.039
Identities = 12/64 (18%), Positives = 35/64 (53%)
Query: 14 NLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGETGA 73
+++++ + DN++ LK+ + +E F ++ ++ + + ++ + + FYG G
Sbjct: 312 DIKHVKEQLDNDHYSLKRPKERIVEYFATMQLLEMRHKKKPEKKDKTKGTILCFYGPPGV 371
Query: 74 GKST 77
GK++
Sbjct: 372 GKTS 375
Score = 27.3 bits (59), Expect = 0.96
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 339 EQLQKAIEITIEKRIDPMIKEAQEYQHEARYNLDRSTDKFILNLTNSAFYEIDQFKSDLR 398
++LQK I+ + ++++ KE + + + TDK N + +++ K L+
Sbjct: 205 QKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPFLK 264
Query: 399 EKMYAHINKNIE 410
E+ + I K I+
Sbjct: 265 EEAFKEIKKQID 276
Score = 26.2 bits (56), Expect = 2.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 365 HEARYNLDRSTDKFILNLTNSAFYEIDQFKSDLREKMYAHINKNIEDEECKEIFKNELI 423
H A +++D S FI N ID+ + LR++M + E +EI KN LI
Sbjct: 466 HYANFSIDLSQVIFIATANN-----IDRIPAPLRDRMEFISVSSYTPSEKEEIAKNYLI 519
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 31.6 bits (70), Expect = 0.051
Identities = 90/506 (17%), Positives = 195/506 (37%), Gaps = 96/506 (18%)
Query: 6 LDVKASIENLQNIFKNTDNE---NERLKKFNQEALEVFQKLERESLKELESLKNNEEWE- 61
L+++ ++ ++ KN E NE LK ++EA+E +L++++L L++ K +EE +
Sbjct: 431 LELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIE---RLKQQALDCLKNAKTDEERKE 487
Query: 62 ---------------NFTIAFYGE---TGAGKSTFIECLRMFFKEQSKVVQQERFKRLYS 103
+ ++ Y + + EC ++ E K+++ + L
Sbjct: 488 CLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCL-- 545
Query: 104 NYQNNYQNDECKKQAILNELHSLQDGAIIGDGRSDFTLKTRSYSFQYNHQNFTLLDVPGI 163
N + DE +K+ + N LQ + + + + + L P
Sbjct: 546 ---KNAKTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTP-- 600
Query: 164 EGDEKKVIDQISNATQKAHAIFYVTKTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWTIFN 223
+ KK++++ + + KA+ + V++ +K E +K T E +K +++ V
Sbjct: 601 --EAKKLLEEEAKESVKAY-LDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSV----- 652
Query: 224 KPINNPRAFKDGLI----DGSEKESLKILNKEMKNILGKHYKGYKAVSAQVAFYGLSSAL 279
RA+ D + + KE K+L E K +L +
Sbjct: 653 ------RAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQ----------------ALDC 690
Query: 280 IPGTDFDKNKQKFLKDFKARELLYQSHFQQLGEFIAEELIKNSRAKIIQSNCNKALKVVE 339
+ D+ +++ LKD L + + ++++ ++ +KA E
Sbjct: 691 LKNAKTDEERKECLKD--------------LPKDLQKKVLAKESVRVYLDCVSKAKNEAE 736
Query: 340 --QLQKAIEITIEKRIDPMIKEAQEYQH-EARYNLDRSTDKFILNLTNSAFYEIDQFKSD 396
+ +K + K ++ K + Y+ R ++ + LT A +++ K
Sbjct: 737 RKECEKLLTPEARKLLEEAKKSVKAYKDCVLRARNEKEKQECEKLLTPEARKLLEESKKS 796
Query: 397 LREKM--YAHINKNIEDEECKEIFKNELIQGIETLHEDIKWRFRECEKRFDGE------- 447
++ + + E +EC+++ E + +E E +K +++C R E
Sbjct: 797 VKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVK-AYKDCVSRARNEKEKQECE 855
Query: 448 ---IKEAIKQLEYRIKDSLAMLERIS 470
EA K LE K A L+ +S
Sbjct: 856 KLLTPEARKLLEESKKSVKAYLDCVS 881
Score = 25.8 bits (55), Expect = 2.8
Identities = 89/461 (19%), Positives = 172/461 (37%), Gaps = 83/461 (18%)
Query: 7 DVKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIA 66
+ K S++ ++ NE E+ + E + LE ++L L++ K E +
Sbjct: 906 EAKESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKR---- 961
Query: 67 FYGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLY----SNYQNNYQNDECKKQAILNE 122
C++ K+ K V + R+Y S +N + EC+K
Sbjct: 962 --------------CVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEA 1007
Query: 123 LHSLQDGAIIGDGRSDFTLKTRSYSFQYNHQNFTLLDVPGIEGDEKKVIDQISNATQKAH 182
L++ D + R+ + Q L P + +K+++Q + KA+
Sbjct: 1008 RKLLEEAKESVKAYKDCVSRARN---EKEKQECEKLLTP----EARKLLEQEVKKSVKAY 1060
Query: 183 AIFYVTKTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWTIFNKPINNPRAFKDGLIDGSEK 242
+ V++ N +K E +K T E +K L++Q K+ + +K
Sbjct: 1061 -LDCVSRARNEKEKQECEKLLTPEA-RKLLENQAL------------DCLKNAKTEAEKK 1106
Query: 243 ESLKILNKEM-KNILGKH-YKGYKAVSAQVAFYGLSSALIPGTDFDKNKQKFLKDFKARE 300
+K L K++ K +L K K Y L + +K + + L +AR+
Sbjct: 1107 RCVKDLPKDLQKKVLAKESVKAY-----------LDCVSRARNEKEKKECEKLLTPEARK 1155
Query: 301 LLYQSH-----FQQLGEFIAEELIKNSRAKIIQSNCNKALKVVEQLQKAIEITIEKRIDP 355
LL +S + E K K++ K L+ ++ KA + + + +
Sbjct: 1156 LLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNE 1215
Query: 356 MIKEAQEYQH----EARYNLDRSTDKFILNLTNSAFYEIDQFKSDLREKMYAHINKNIED 411
KE QE + EAR L++ K + A+ + + +EK
Sbjct: 1216 --KEKQECEKLLTPEARKLLEQEVKKSV-----KAYLDCVSRARNEKEK----------- 1257
Query: 412 EECKEIFKNELIQGIETLHEDIKWRFRECEKRFDGEIKEAI 452
+EC+++ E + +E + ++C K D + AI
Sbjct: 1258 QECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAI 1298
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 30.8 bits (68), Expect = 0.087
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 13 ENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGE-- 70
E+L++IF + ++ E+ K Q+ + ++ E+ L+E + LK N+E +
Sbjct: 88 ESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLN 147
Query: 71 --TGAGKSTFIECLRMFFKEQSKV---VQQERFKRLYSNYQNNYQNDECKKQAILNELHS 125
T +S + L + +Q V QE + ++Y ++ K ++ +
Sbjct: 148 QFTQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWRGVFYHKASVSVLI-- 205
Query: 126 LQDGAIIGDGRSDFTLKTRSYSFQYNHQNFTLLD 159
I DG D+T+ + S YN TLLD
Sbjct: 206 ----MITKDGEFDYTILSYSDFKDYNKSVMTLLD 235
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 30.8 bits (68), Expect = 0.087
Identities = 11/41 (26%), Positives = 24/41 (57%)
Query: 69 GETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNY 109
G TG+GK+T+I+ + F ++ +++ E + + + NY
Sbjct: 178 GGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNY 218
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 29.3 bits (64), Expect = 0.25
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 23 DNENERLKKFNQEA--LEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKSTFIE 80
D E R++ F E + VF LER +K L+S+ F + A KS E
Sbjct: 207 DAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAA-SQFAVGSERLNLAVKSIEDE 265
Query: 81 -CLRM-FFKEQSKVVQQERFKR 100
LR+ FFKEQ K+++ R K+
Sbjct: 266 LALRLKFFKEQDKMLEYNRLKQ 287
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 29.3 bits (64), Expect = 0.25
Identities = 24/112 (21%), Positives = 55/112 (48%), Gaps = 12/112 (10%)
Query: 325 KIIQSNCNKALKVVEQLQKAIEIT--IEKRIDPMIKEAQEYQHEARY-------NLDRST 375
K +++N + K+ E++ + E EK+++ I+ Q+YQ+ Y +L
Sbjct: 236 KRLKNNVKEIAKLHEKIPISAEDANEFEKKVNDFIERFQKYQYPIYYGNAIFLADLPAKI 295
Query: 376 DKFILNLTNSAFYEIDQFKSDLREKMYAHINKNIEDEECKEIFKNELIQGIE 427
D + + AF ++ + ++ ++ + I ++ +IFKN++ +GIE
Sbjct: 296 DTPLYSPIKIAF---EKALKNAKDSVFIASSYFIPGKKIMKIFKNQISKGIE 344
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 28.9 bits (63), Expect = 0.33
Identities = 30/95 (31%), Positives = 46/95 (47%), Gaps = 25/95 (26%)
Query: 12 IENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGET 71
IENLQN K+ + E LKK E LE LE+ +L ELE+L NE
Sbjct: 111 IENLQNEIKHKSEKQEVLKK---EMLE----LEKLAL-ELENLVENE------------- 149
Query: 72 GAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQ 106
E ++ FK++ ++V++ ++YS Y+
Sbjct: 150 ---VKNIKETQQIIFKKKEELVEKTE-PKIYSFYE 180
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 28.9 bits (63), Expect = 0.33
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 NLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELE 52
N + F + +NER K +E E+ K+E++ +K LE
Sbjct: 98 NRKFYFIDLAKQNERKKDLEKEKKELLNKIEKQKIKHLE 136
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 28.9 bits (63), Expect = 0.33
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 20/143 (13%)
Query: 11 SIENLQNIFKNTDNENERLKKFNQEALEVFQ-KLERESLKE--------LESLKNNEEWE 61
+++ LQ I + +L K Q+ L+VF+ +L++ +K L+ + +
Sbjct: 38 ALQELQKI------DESKLTKEQQQVLKVFKGELDQTEIKGIDLNDLYILDQGTRHAGAK 91
Query: 62 NFTIAFYGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNYQ--NDECKKQAI 119
+ YG G T E + M ++ V E F+RL + ++ Y+ N+ K + +
Sbjct: 92 KILVKHYGVENTGGLTNDELINMSEVIKNGSVLLESFERLKNGFRYGYEWDNNGVKLRLV 151
Query: 120 LNELHSLQDGAIIGDGRSDFTLK 142
+++L+ DG + D SD K
Sbjct: 152 VDDLN---DGNKVFDFYSDRNFK 171
>ref|NP_223710.1| putative [Helicobacter pylori J99]
Length = 243
Score = 28.5 bits (62), Expect = 0.43
Identities = 25/88 (28%), Positives = 38/88 (42%), Gaps = 10/88 (11%)
Query: 285 FDKNKQKFLKDFKARELLYQSHFQQLGE-FIAEELIKNSRAKIIQ---------SNCNKA 334
FD+ D R + Y LG FIA+ L +N K + S N
Sbjct: 16 FDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFF 75
Query: 335 LKVVEQLQKAIEITIEKRIDPMIKEAQE 362
+ + +Q+Q+ IE+ PM+K+AQE
Sbjct: 76 IALNQQIQQDIELVGIDNSMPMLKKAQE 103
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 28.1 bits (61), Expect = 0.57
Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 65/332 (19%)
Query: 172 DQISNATQKAHAIFYVTKTPNPP-QKGEEKKEGTIEKIQKQLDSQTEVWTIFNKPINNPR 230
+Q+ N+ K IF + K N +K E KKE ++ +K++ ++ + + K +
Sbjct: 99 EQLRNSQVKG--IFTLGKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEK 156
Query: 231 AFKDGLIDGSEKESLKILNKEMKNILGKHYKGYKAVSAQVAFYGLSSALIPGTDFDKNKQ 290
F D K++ +E K IL +G+K +K K
Sbjct: 157 DFTDSCWKNLYKKN----EEEFKEIL----EGFKRK-------------------EKFKG 189
Query: 291 KFLKDFKARELLYQSHFQQLGEFIAEELIKNSRAKIIQSNCNKALKVVE----------- 339
K LK+F+ H Q E + E +K + +I+ S L ++E
Sbjct: 190 KILKEFE-----NDKHNQ--SEIVGLEKLK-EKIEIVFSKNQTELALLECDLTDFDSIEN 241
Query: 340 ------QLQKAIEITIEKRIDPMIKEAQEYQHEARYNLDRSTDKFILNLTNSAFYEIDQF 393
++ + ++ I I + E Q Y D S F T + ++F
Sbjct: 242 HSIWEQKIVGSGDVAIANLIKTLSNEDWVAQGR-EYVKDNSICPFCQKETIT-----EEF 295
Query: 394 KSDLREKMYAHINKNIED-EECKEIFKNELIQGIETLHEDIKWRFRECEKRFDGE-IKEA 451
K L ++ + ++ KE + N+ + +E L E IK + + D E +K
Sbjct: 296 KKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRI 355
Query: 452 IKQLEYRIKDSLAMLERISIDRDFNLNFDTDS 483
I+ L +IK + + I ++ + NF DS
Sbjct: 356 IETLRSKIKAN--QQKMIDKSKEMSRNFKLDS 385
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 27.7 bits (60), Expect = 0.74
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 5 YLDVKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFT 64
+L ++ +E L++ F D EN LK + + +Q E KEL++ KNN+E
Sbjct: 239 FLPLEKRLETLKSRFL-CDKEN--LKSCANQLQQRYQNALIERDKELKNAKNNKEKHALI 295
Query: 65 IAFYGET 71
+A Y T
Sbjct: 296 LANYEHT 302
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 27.7 bits (60), Expect = 0.74
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 8 VKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKEL-ESLKNNEE 59
V+ + ++ N K + + E + +++A E QK+ E++K++ ES+KN E+
Sbjct: 128 VRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKED 180
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 27.7 bits (60), Expect = 0.74
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 8/62 (12%)
Query: 3 NIYLDVKASIENLQNIFK-NTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWE 61
N L + S+ENLQ + + + +N + N E L+ +L+E LKN E E
Sbjct: 86 NKLLQLHYSLENLQTLRELKEEADNNYQESLNDEKLQ-------NNLREWRDLKNTPEEE 138
Query: 62 NF 63
N+
Sbjct: 139 NY 140
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 27.7 bits (60), Expect = 0.74
Identities = 61/309 (19%), Positives = 114/309 (36%), Gaps = 64/309 (20%)
Query: 7 DVKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIA 66
D K S+EN + ++ T N+N L+K QE + +E + + + T+
Sbjct: 45 DKKTSLENAKKAYELTQNKNSALQKAMQE-----KGVENSDKSPDAKMPEDIYCKQITLE 99
Query: 67 FYGETGAGKSTFIECLRMFFKEQSK---VVQQERFKRLYSNYQNNYQNDECKKQAILNEL 123
ET C+ + K + + + + FK L + Y + EL
Sbjct: 100 SMLETTDAFQA--SCIAIALKSKIRDFDKIPIQTFKPLQEKIKEAY-------PILYEEL 150
Query: 124 HSLQDGAIIGDGRSDFTLKTRSYSFQYNHQNFTLLDVPGIEGDEKKVIDQISNATQKAHA 183
LQ + S F + +S +NH ++ EKK+
Sbjct: 151 EILQSKNV---SASLFKANAQVFSALFNHLSY-----------EKKL------------Q 184
Query: 184 IFYVTKTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWT-IFNKPINNPRA--FKDGLIDGS 240
IF +K I+++ + LD + + + I +P+ FKD L +
Sbjct: 185 IF--------------EKHIPIKELNRLLDEDYPAFNRLIYQVILDPKLDHFKDALAKSN 230
Query: 241 EKESLKILNKEMKNILGKHYKGYKAVSAQVAFYGLSSALIPGTDFDKNKQKFLKDFKARE 300
+S N + ILG + +K S + ++ S A++ DF K++ F + +++
Sbjct: 231 ATQS----NAQTFFILGINEILHKKTSKALKYFERSEAVVKDDDFSKDRAIFWQYLASKK 286
Query: 301 LLYQSHFQQ 309
H Q
Sbjct: 287 KKTLEHLSQ 295
>ref|NP_222913.1| putative [Helicobacter pylori J99]
Length = 85
Score = 27.7 bits (60), Expect = 0.74
Identities = 16/62 (25%), Positives = 28/62 (44%)
Query: 37 LEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKSTFIECLRMFFKEQSKVVQQE 96
L F+ L + S +L + +E + GE GKS +E L++F K+ +E
Sbjct: 10 LHHFRNLGKNSPTKLLLNSSFDEKHGGLVVLVGENNVGKSNVLEALKIFNDADIKLCSEE 69
Query: 97 RF 98
+
Sbjct: 70 DY 71
>ref|NP_223762.1| putative [Helicobacter pylori J99]
Length = 256
Score = 27.3 bits (59), Expect = 0.96
Identities = 35/142 (24%), Positives = 56/142 (38%), Gaps = 11/142 (7%)
Query: 150 YNHQNFTLLDVPGIEGDEKKVIDQISNATQKAHAIFYVTKTPNPPQKGEEKKEGTIEKIQ 209
YN+ + G+ DEKK ++ AT+K + Y+ G EG +
Sbjct: 101 YNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYI-------NLGIMYMEG--RGVP 151
Query: 210 KQLDSQTEVWTIFNKPINNPRAFKDGLIDGSEKESLKILNKEMKNILGKHYKGYKAVSAQ 269
TE + N G I S + L I + K ++ +YK VS+
Sbjct: 152 SNYAKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVV--YYKMAADVSSS 209
Query: 270 VAFYGLSSALIPGTDFDKNKQK 291
A+ GLS + G +K+K+K
Sbjct: 210 RAYEGLSESYRYGLGVEKDKKK 231
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 27.3 bits (59), Expect = 0.96
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 6/43 (13%)
Query: 389 EIDQFKSDLREKMYAHINKNIEDEE------CKEIFKNELIQG 425
E+D F +L E+ Y H+ + + D KE+F E+I G
Sbjct: 562 EMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEVITG 604
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 27.3 bits (59), Expect = 0.96
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 14 NLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGETGA 73
+LQN N+ N N L+ N +E +K+ E + E + EN T A
Sbjct: 44 HLQNT-PNSKNANTPLEPKNAAKIETQEKITEEKEEAKEIITEEIVQENPTQALIPNERV 102
Query: 74 GKSTFIECLRMFFKEQSKVVQQERFKRL 101
+E + FK + ++E KRL
Sbjct: 103 FLKGLLERTLVLFKGMQALEEKEALKRL 130
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 26.9 bits (58), Expect = 1.3
Identities = 20/107 (18%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 322 SRAKIIQSNCNKALKVVEQLQKAIEITIEKRIDPMIKEAQEYQHEARYNLDR--STDKFI 379
++ K+ + + K LK +EQ ++ E+ I Q+Y+ + + +++ K +
Sbjct: 71 AQLKVSKEHKKKLLKELEQAKEKAELIISDANKEAYTITQKYELQTKMDVENLIKNSKAL 130
Query: 380 LNLTNSAFYEIDQFKSDLREKMYAHINK----NIEDEECKEIFKNEL 422
++L E+ + K +L E ++ + + + ++C I K L
Sbjct: 131 MDL------EVKKIKRELVESVFKDLRESKKVSFNAQDCVNILKQRL 171
>ref|NP_223412.1| putative [Helicobacter pylori J99]
Length = 292
Score = 26.6 bits (57), Expect = 1.6
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 32/187 (17%)
Query: 323 RAKIIQ-SNCNKALKVVEQLQKAIEITIEKRIDPMIKEAQEYQHEARYNLDRSTDKFILN 381
RA ++Q + C K +E +E ++K + QE + + + F L
Sbjct: 3 RASVLQHAYCGSRKKTIEHTANLLEQALKKHPKTNLVVLQELNPYSYFCQSENPKFFDLG 62
Query: 382 LTNSAFYEIDQFKSDLREKMYAHINKNIEDEECKEIFKNELIQGIETLHEDIKWRFRECE 441
F E F S L +K + ++ ++ K ++ N + E
Sbjct: 63 ---EYFEEDKAFFSALAQKFQVVLIASLFEKRAKGLYHNSAVV---------------FE 104
Query: 442 KRFDGEIKEAIKQLEYRIKDSLAMLERISIDRDFNLNFDTDSGIDGTKLATSIGGLGLLG 501
K DG I +++ I D E+ + T + +ATS+G LGL+
Sbjct: 105 K--DGSIAGVYRKMH--IPDDPGFYEKF---------YFTPGDLGFEPIATSVGKLGLMV 151
Query: 502 IFNAWNP 508
++ W P
Sbjct: 152 CWDQWYP 158
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 26.2 bits (56), Expect = 2.1
Identities = 30/156 (19%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 88 EQSKVVQQERFKRLYSNYQNNYQNDECKKQAILNELHSLQD-GAIIGDGRSDFTLKT--- 143
E+ K+V E + Y Y+N+ E I+++ ++L+ A++ F K
Sbjct: 1110 EKEKIVYPETSQGAYFIYENSGIFLEKTVFMIVSDAYNLKLLTALLNSKLITFYFKNFCG 1169
Query: 144 ----RSYSFQYNHQNFTLLDVPGIEGDEKKVIDQISNATQKAHAIFYVTKTPNPPQKGEE 199
+QYN + +P I +++ D+I++ ++ A+ K ++
Sbjct: 1170 GCILGKSGYQYNKHALEKIPIPQITEKNQELADKITDCAEQILAL-----------KAKD 1218
Query: 200 KKEGTIEKIQKQLDSQTEVWTIFNKPINNPRAFKDG 235
K T +K++K++D+ V+ +++ + +DG
Sbjct: 1219 PKANT-QKLEKEIDAL--VYQLYHLTDEEIKTIEDG 1251
Score = 24.3 bits (51), Expect = 8.2
Identities = 30/116 (25%), Positives = 43/116 (36%), Gaps = 30/116 (25%)
Query: 4 IYLDVKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENF 63
+ ++VKA + N KN EN K F Q L +++E+E KNN
Sbjct: 82 VLIEVKA-LNNKTEFPKN--RENPLSKAFCQMVLYFLEEIEKE--------KNNSL---- 126
Query: 64 TIAFYGETGAGKSTFIECLRMFF----KEQSKVVQQERFKRLYSNYQNNYQNDECK 115
K T I FF K+ + + +R K+ Y NY D K
Sbjct: 127 -----------KHTIICNAHEFFLFDCKDLLSLKEDKRIKKFYKNYAKKEGTDSSK 171
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 26.2 bits (56), Expect = 2.1
Identities = 27/97 (27%), Positives = 42/97 (42%), Gaps = 17/97 (17%)
Query: 340 QLQKAI-EITIEKRIDPMIKEAQEYQH---EARYNLDRS---------TDKFILNLTNSA 386
+L KA+ E T + IK A E H + NL+ S T K I L N
Sbjct: 2 KLPKALNEATAGAALKYHIKRALERSHLISDFSKNLELSAKNSKFTNNTLKIIEELNNG- 60
Query: 387 FYEIDQFKSDLREKMYAHINKNIEDEECKEIFKNELI 423
+ Q +++EK + N+ + +E+ KE+ N I
Sbjct: 61 ---VKQASEEIKEKAFDFSNEKLTNEQIKELLNNAKI 94
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 26.2 bits (56), Expect = 2.1
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 37 LEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKSTFIECLRMFFKEQSKVVQQE 96
L+ +R + K+L N + +N G GAGKSTF++ L S V
Sbjct: 2 LQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVIIT 61
Query: 97 RFKRLYSNYQNNYQNDECKKQAILNELHSLQDGAIIGDGR 136
R+ Q+ Y ++ SL+D +IG+ R
Sbjct: 62 SGMRMGVLGQDQYAFEDL----------SLKDAVLIGNRR 91
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 26.2 bits (56), Expect = 2.1
Identities = 50/218 (22%), Positives = 94/218 (42%), Gaps = 36/218 (16%)
Query: 282 GTDFDKNKQKFLKDFKARELLYQSHFQQLGEFIAEELIKNSRAKIIQS--------NCNK 333
G D+ ++ K+ + K ++ SH + + + LI +R +I S N NK
Sbjct: 190 GFDYLRDNMKYSLEHKVQK----SHAFAIVDEVDSILIDEARTPLIISGPVDRRMENYNK 245
Query: 334 ALKVVEQLQKAIEITI-EKRIDPMIKEAQEYQHEARYNLDRSTDKFILNLTNSAF-YEID 391
A +V + +Q ++ TI EK +I E + E + +D + + N+A + +D
Sbjct: 246 ADEVAKSMQVEVDFTIDEKNRAILITEEGIKKAENLFGVDN-----LYKIENAALSHHLD 300
Query: 392 QFKSDLREKMYAHINKNIEDEECKEIFKNELIQGIETLHEDIKWRFRECEKRFDGEIKEA 451
Q L+ I+K+ + NE++ + ++ R E +RF + +A
Sbjct: 301 Q---ALKANYLFFIDKDY------IVANNEVV-----IVDEFTGRLSE-GRRFSEGLHQA 345
Query: 452 IKQLE-YRIKDSLAMLERISIDRDFNLNFDTDSGIDGT 488
++ E IK+ L I+ F + F SG+ GT
Sbjct: 346 LEAKEGVSIKEESQTLADITFQNYFRM-FSKLSGMTGT 382
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 26.2 bits (56), Expect = 2.1
Identities = 15/49 (30%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 20 KNTDNENERLKKFNQEALEV-FQKLERESLKELESLKNNEEWENFTIAF 67
K EN +L FN+E L++ F+ E+ L+++ + + E+ E T F
Sbjct: 51 KRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHF 99
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 26.2 bits (56), Expect = 2.1
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 64 TIAFYGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNYQNDECKKQAILNEL 123
++A G +G+GKST + L K S V + +Y+ K I+ +
Sbjct: 28 SLAILGVSGSGKSTLLSHLATMLKPDSGTVSLLEHQDIYALNSKKLLELRRLKVGIVFQS 87
Query: 124 HSLQDGAIIGDGRSDFTLKTRSYSFQYNHQNFTLLDVPGIEGDEKKVIDQISNATQKAHA 183
H L G + ++ + + NH +LL+ GI K+ + ++S Q+ +
Sbjct: 88 HYLFKGFSALENLQVASILAKQ---EINH---SLLEQLGIAHTLKQGVGELSGGQQQRLS 141
Query: 184 I 184
I
Sbjct: 142 I 142
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 25.8 bits (55), Expect = 2.8
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 3/56 (5%)
Query: 65 IAFYGETGAGKSTFIECLRMFFKEQSK---VVQQERFKRLYSNYQNNYQNDECKKQ 117
+ FYG TG GK+ + + E+ K +V E F + + +N D KK+
Sbjct: 146 VLFYGGTGLGKTHILNAIGNHALEKHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKK 201
>ref|NP_223815.1| AMINO ACID ABC TRANSPORTER, ATP-BINDING PROTEIN [Helicobacter
pylori J99]
Length = 248
Score = 25.8 bits (55), Expect = 2.8
Identities = 12/27 (44%), Positives = 16/27 (58%), Gaps = 6/27 (22%)
Query: 62 NFTI------AFYGETGAGKSTFIECL 82
NFT+ G +G GKSTF++CL
Sbjct: 24 NFTLNKGEVAVILGPSGCGKSTFLKCL 50
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 25.8 bits (55), Expect = 2.8
Identities = 16/46 (34%), Positives = 27/46 (57%), Gaps = 3/46 (6%)
Query: 14 NLQNIFKNTDNENERLKKFN--QEALEVFQKLERESLKELESLKNN 57
N + K+ D + E +K FN +EAL++F+ L+ L+ LKN+
Sbjct: 205 NREVTIKHCDEKGEEIK-FNDKEEALKLFESLKDNKACLLKDLKNS 249
>ref|NP_222973.1| putative [Helicobacter pylori J99]
Length = 409
Score = 25.8 bits (55), Expect = 2.8
Identities = 22/74 (29%), Positives = 36/74 (47%), Gaps = 12/74 (16%)
Query: 46 ESLKELESLKNNEEW-ENFTIAFYGETG-----AGKSTFIECLR----MFFKEQSKVVQQ 95
ESL+ELE ++N++ W ENF F E+ G + +I+ + +F Q
Sbjct: 210 ESLEELEWVENSKGWFENFYQRFLKESNFTSLYEGANDYIDMFKDTHTLFVHNQ--FASL 267
Query: 96 ERFKRLYSNYQNNY 109
E KR+ S +N +
Sbjct: 268 EALKRIKSQVKNAF 281
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 25.8 bits (55), Expect = 2.8
Identities = 11/40 (27%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 332 NKALKVVEQLQKAIEIT---IEKRIDPMIKEAQEYQHEAR 368
N+ L+ ++L+K +++ + ID +++EA+E++ EA+
Sbjct: 66 NEQLEEAKRLEKQVDMQDRHSQSEIDRLMREAKEHEREAK 105
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 25.4 bits (54), Expect = 3.7
Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 381 NLTNSAFYEIDQFKSDLREKMYAHINKNIED-EECKEIFKNELIQGIETLHEDIK 434
N T A Y++++ SDL EK + K +E E E + + G E E+IK
Sbjct: 188 NETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELDIEEIK 242
>ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 440
Score = 25.4 bits (54), Expect = 3.7
Identities = 20/86 (23%), Positives = 38/86 (43%), Gaps = 3/86 (3%)
Query: 356 MIKEAQEYQHEARYNLDRSTDKFILNLTNSAFYEIDQFKSDLREKMYAHINKNIEDEECK 415
++KE QE + + +L+ S + +L+ A I +F+ L + + KN+E
Sbjct: 76 LLKECQE---KLKRSLNLSANHCVLSAGYGASSAIKKFQEILGVCIPSKTKKNLEPYLKD 132
Query: 416 EIFKNELIQGIETLHEDIKWRFRECE 441
K ++ E ++ WR CE
Sbjct: 133 MALKRVIVGPYEHHSNEVSWREGLCE 158
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.4 bits (54), Expect = 3.7
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 195 QKGEEKKEGTIEKIQKQLDSQTEVWTIFNKPINN 228
QK EE KE + I K +T + I+N NN
Sbjct: 1286 QKAEELKEAFKDWIYKDYSRRTHLEQIYNDTFNN 1319
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 25.4 bits (54), Expect = 3.7
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Query: 7 DVKASI--ENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELE 52
DVK S+ E ++ ++N + ++ F +L LE+ LKELE
Sbjct: 200 DVKISLNEEEMKKYYENHRKDFKKPTSFKTRSLYFDASLEKTDLKELE 247
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 25.4 bits (54), Expect = 3.7
Identities = 19/91 (20%), Positives = 38/91 (40%), Gaps = 4/91 (4%)
Query: 163 IEGDEKKVIDQISNATQKAHAIFYVTKTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWTIF 222
+EG + + ++ + +Q + Y K E++KE IEK ++++D++ I
Sbjct: 209 VEGIDAGTLGKLFSGSQSKNYFAYYDALV----KKEKRKEVRIEKKEERIDARENKREIK 264
Query: 223 NKPINNPRAFKDGLIDGSEKESLKILNKEMK 253
+ I P+ G + E E K
Sbjct: 265 QEAIKEPKKANQGTENAPTLEEKNYQKAERK 295
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.4 bits (54), Expect = 3.7
Identities = 33/128 (25%), Positives = 53/128 (40%), Gaps = 15/128 (11%)
Query: 169 KVIDQISNATQKAHAIFYVTKTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWTIFNKPINN 228
K I IS + + H KTPN P K ++ +E E QK+ + I K N
Sbjct: 285 KPIMPISASNTENHDKTENHKTPNHPIKEDDLQESPQENPQKENIEE----NIEEKETQN 340
Query: 229 PRAFKDGLIDGSEKESLKILNKEMKNIL-GKHY------KGYKAVSAQVAFYGLSSALIP 281
+F + ++K + E K IL G Y K Y+ + Q+ L++ +
Sbjct: 341 APSFSPLTLTSAKKPVMVKELSENKEILDGLDYGEVQKPKDYELPTTQL----LNAVCLK 396
Query: 282 GTDFDKNK 289
T D+N+
Sbjct: 397 ETSLDENE 404
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 25.4 bits (54), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 341 LQKAIEITIEKRIDPMIKEAQEYQHEARYN 370
L+ IEI +K ++ IKE+Q+Y H +N
Sbjct: 456 LEAQIEINTQK-VEAFIKESQDYMHFLLHN 484
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 25.0 bits (53), Expect = 4.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 289 KQKFLKDFKAREL----------LYQSHFQQLGEFIAEELIKNSRAKIIQSNCNKALKV 337
K F+K RE+ L++ F+ + E I+EE+ KN + ++ NK+ K+
Sbjct: 395 KSAFVKTTMIREIPYPKEIETLVLHKREFKIVMEKISEEIAKNHQVIVVYPLVNKSEKI 453
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 25.0 bits (53), Expect = 4.8
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 17 NIFKNTDNE----NERLKKFNQEALE--VFQKLERESLKELESLKNNEEWENFTIAFYGE 70
N F T N N R+ + +LE F+ ESLK L +N I GE
Sbjct: 94 NHFSITTNNQITLNIRVPRLKPLSLEDFTFKVSNPESLKNLALKGHN-------ILISGE 146
Query: 71 TGAGKSTFIECLRMFFKEQSKVVQQERFKRL 101
T +GK++ + L + +VV E + L
Sbjct: 147 TSSGKTSLLNALLDCVNKDERVVSVEDSQEL 177
>ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pylori J99]
Length = 380
Score = 25.0 bits (53), Expect = 4.8
Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 379 ILNLTNSAFYEIDQFKS-DLREKMYAHINKNI 409
ILNLT +FYE +F S E++Y + K I
Sbjct: 124 ILNLTPDSFYEKSRFDSKKALEEIYQWLEKGI 155
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 25.0 bits (53), Expect = 4.8
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 11 SIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKEL----ESLKNNEE 59
++E+L+N ++L K N+E E+ KL ++ + ++ ++LK EE
Sbjct: 109 TLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEE 161
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 25.0 bits (53), Expect = 4.8
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 2/35 (5%)
Query: 69 GETGAGKSTFIECL--RMFFKEQSKVVQQERFKRL 101
G TG+GKSTFI L + K VV +R L
Sbjct: 268 GSTGSGKSTFISFLIANLLTKYDMSVVALDRMNGL 302
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.0 bits (53), Expect = 4.8
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 20 KNTDNENE--RLKKFNQEALEVFQKLERESLKELESLKNNE 58
KNT N +E + +K +++L+ ++LE++ K LES N+
Sbjct: 603 KNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNK 643
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 265
Score = 25.0 bits (53), Expect = 4.8
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 65 IAFYGETGAGKSTFIECL 82
+A GE+GAGKST + L
Sbjct: 31 VALLGESGAGKSTILRIL 48
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 25.0 bits (53), Expect = 4.8
Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 37/168 (22%)
Query: 129 GAIIGDGRSDFTLKTRSY------------SFQYNHQNFTLLDVPGIEGDEKKVIDQISN 176
G I DG D +T S+ SF+ N + TL +PGI+ + +I N
Sbjct: 1541 GMRINDGIYDAKNQTYSFTNPLNNALKITESFKNNQLSVTLSQIPGIKNTLYNIGSEIFN 1600
Query: 177 -------------ATQKAHAIFYVTKTP----NPPQKGEEKKEGTIEKIQKQLDSQTEVW 219
+ A +FY+T + NP Q + K + +
Sbjct: 1601 YQKVYNNANGVYSYSDDAQGVFYLTSSVKGYYNPNQSYQASGSNNTTKNNNLTSESSVIS 1660
Query: 220 TIFN---KPINNPRAFKDGL----IDGSEKESLKILNKEMKNILGKHY 260
+N PI+ + G I + +LK L E+K ILG +
Sbjct: 1661 QTYNAQGNPISALHVYNKGYNFSNIKALGQMALK-LYPEIKKILGNDF 1707
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 25.0 bits (53), Expect = 4.8
Identities = 19/87 (21%), Positives = 41/87 (46%), Gaps = 4/87 (4%)
Query: 5 YLDVKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFT 64
++ V+ +++ +N N ++E ++ ++AL+ K + + L +N+ +F
Sbjct: 545 HIPVQKMLQSEKNRVLNIESELQKRVVGQEKALKAIAKAIKRNKAGLSD--SNKPIGSFL 602
Query: 65 IAFYGETGAGKSTFIECLRMFFKEQSK 91
F G TG GK+ + L F + K
Sbjct: 603 --FLGPTGVGKTESAKALAQFLFDSDK 627
Score = 24.6 bits (52), Expect = 6.2
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 294 KDFKARELLYQ-SHFQQLGEFIAEELIKNSRAKII------------QSNCNKALKVVEQ 340
K+ K +EL ++ QQ G + L +N+ A+I+ QS N+ L + +
Sbjct: 506 KEKKEKELQHKWETMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
Query: 341 LQKAI 345
LQK +
Sbjct: 566 LQKRV 570
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 25.0 bits (53), Expect = 4.8
Identities = 23/89 (25%), Positives = 37/89 (40%), Gaps = 16/89 (17%)
Query: 17 NIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKS 76
++FKN D NQE + + KE+ + + G TG+GKS
Sbjct: 408 SVFKNLDYSPFLFNFHNQE-------VSHNNAKEIARVNGHT-------LVIGATGSGKS 453
Query: 77 TFIECLRM--FFKEQSKVVQQERFKRLYS 103
T I L M + +++ +R + LYS
Sbjct: 454 TLISYLMMSALKYQNMRLLAFDRMQGLYS 482
Score = 24.3 bits (51), Expect = 8.2
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 83 RMFFKEQSKVVQQERFKRLYSNYQNNYQNDECKKQAILNELHS 125
+M KVV + KR +Y+ + Q+D QAILN+ +
Sbjct: 76 QMALDSLEKVVARLVVKRRKIDYKQSIQSDSQYLQAILNQFEN 118
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 24.6 bits (52), Expect = 6.2
Identities = 11/55 (20%), Positives = 28/55 (50%)
Query: 387 FYEIDQFKSDLREKMYAHINKNIEDEECKEIFKNELIQGIETLHEDIKWRFRECE 441
++ ++ K+ L + N+E F N++I+G++ +D+++ + CE
Sbjct: 115 YFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACE 169
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 24.6 bits (52), Expect = 6.2
Identities = 19/49 (38%), Positives = 27/49 (54%), Gaps = 5/49 (10%)
Query: 9 KASIENLQNIFKNTDNENE-RLKKFNQEALEVFQKLERESLKELESLKN 56
+A IE L K +NE E RLK N++ L +LERE +++ KN
Sbjct: 135 EAEIERL----KRENNEAESRLKAENEKKLNEKLELEREKIEKALHEKN 179
>ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter pylori J99]
Length = 410
Score = 24.6 bits (52), Expect = 6.2
Identities = 22/79 (27%), Positives = 39/79 (48%), Gaps = 6/79 (7%)
Query: 357 IKEAQEYQHEARYNLDRSTDKFILNLTNSAFYEIDQFKSDLREKMYAHINKNIEDEECKE 416
+KE +EY A N+ S + LT +A + + L++ + + + +EE +
Sbjct: 165 VKETKEYMPIANDNICGS-----VLLTENAHVDPGEVVRSLQQYLQNAGVEFLYNEEVID 219
Query: 417 I-FKNELIQGIETLHEDIK 434
FKN LI+G+ T E I+
Sbjct: 220 FEFKNNLIEGVITHKEKIQ 238
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 24.6 bits (52), Expect = 6.2
Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 3/67 (4%)
Query: 285 FDKNKQKFLKDFKARELLYQSHFQQLGEFIAEELIKNSRAKIIQSNCNKALKVVEQLQKA 344
F+ + L AR L+ + + ++ +F+ E + AKII + A K E +KA
Sbjct: 330 FEGQTKSKLGSSYARALVSKLVYDKIHQFLEEN---PNEAKIIANKALLAAKAREASKKA 386
Query: 345 IEITIEK 351
E+T +K
Sbjct: 387 RELTRKK 393
>ref|NP_223139.1| putative [Helicobacter pylori J99]
Length = 162
Score = 24.6 bits (52), Expect = 6.2
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 25 ENERLKKFNQ-EALEVFQKLERESLKELESLKNNEEW 60
+NE + FN+ ++LE+FQK E + + + + ++EW
Sbjct: 103 KNENIVLFNRCDSLELFQKEEPIAQEPKKDERESKEW 139
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 24.6 bits (52), Expect = 6.2
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 166 DEKKVIDQISNATQ----KAHAIFYVTKTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWTI 221
+E KV+ Q+ + T+ KA IF EK ++KIQ+ L E++
Sbjct: 73 EEHKVVHQLDDVTRDSEVKATQIFDQLDLIGA---SAEKIAKMVKKIQEPLQKHQEIFDN 129
Query: 222 FNKPINNPRAFKDGLIDGSE-KESLKILNKEMKN 254
+ + +FK L + E +LK + +E N
Sbjct: 130 LHAHFPHVESFKTALNEQQEILNALKSIEEEAAN 163
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 24.3 bits (51), Expect = 8.2
Identities = 13/49 (26%), Positives = 25/49 (50%)
Query: 378 FILNLTNSAFYEIDQFKSDLREKMYAHINKNIEDEECKEIFKNELIQGI 426
FIL++ N +YE ++ +++ NI D + + NEL+ G+
Sbjct: 25 FILSVKNQEYYEKLAERNMTKKEFLIPTRGNITDRNHEFLAINELVFGV 73
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 24.3 bits (51), Expect = 8.2
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1 MKNIYLDVKASIENLQNIFKNTDNENERLKKFNQEALEV 39
++N+ +D+K ++ENL + + NE++ KF EV
Sbjct: 601 LENMGVDIKETLENLHGV--GVEFFNEKVVKFKGNDKEV 637
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 24.3 bits (51), Expect = 8.2
Identities = 11/43 (25%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 9 KASIENLQNIFKNTDNENERLKKFNQ-EALEVFQKLERESLKE 50
K ++ ++ +++ N N+RLK+ + A E+ + E+ L+E
Sbjct: 1648 KFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKRMLQE 1690
Score = 24.3 bits (51), Expect = 8.2
Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 13/78 (16%)
Query: 190 TPNPPQKGEEKKEGTIEKIQKQLDSQTEV-WTIFNKPINNPRAFKDGLIDGSEKESLKIL 248
TP QK EK + ++KIQ+Q D +NK I+ D +
Sbjct: 2022 TPKDKQKMVEKAKVEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDR------------M 2069
Query: 249 NKEMKNILGKHYKGYKAV 266
+KEM + + K +G+ ++
Sbjct: 2070 SKEMMSAIAKDKEGFNSI 2087
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 24.3 bits (51), Expect = 8.2
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 9 KASIENLQNIFKNTDNENER-LKKFNQEALEVFQKLERESLKELESLKNNEEWENFTIAF 67
K S++N N+ K E+ L K + +A E+ ++ +E L + + F
Sbjct: 6 KESLQNNPNLSKKDIKIVEKILSKNDIKAAEMKERYLKEGL--------------YVLNF 51
Query: 68 YGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNYQNDECKKQAI 119
G+GK+T +E L F + +F + + Q N D +K+ +
Sbjct: 52 MSSPGSGKTTMLENLADF--------KDFKFCVVEGDLQTNRDADRLRKKGV 95
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 24.3 bits (51), Expect = 8.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 286 DKNKQKFLKDFKARELLYQSHFQQLGEFIAEEL 318
D K KFL +F A ELL + L E+L
Sbjct: 484 DLQKAKFLNEFMASELLLAPTKESLSVLYEEQL 516
>ref|NP_222848.1| putative [Helicobacter pylori J99]
Length = 242
Score = 24.3 bits (51), Expect = 8.2
Identities = 35/195 (17%), Positives = 79/195 (39%), Gaps = 21/195 (10%)
Query: 242 KESLKILNKEMKNILGK--HYKGYKAVSAQVAFYGLSSALIPGTDFDKNKQKFLKDFKAR 299
KE+L+++ K+ + G+ + GY + +V Y + + N + +
Sbjct: 28 KENLEVVFKKDQTCCGQPSYNSGYYEETKKVVLYNIKL-------YSNNDYPIILPSGSC 80
Query: 300 ELLYQSHFQQLGEFIAEELIKNSRAKIIQSNCNKALKVVEQLQKAIEITIEKRIDPMIKE 359
+ + + +L E AE +++ C++ ++ E L K +++ E + +P+
Sbjct: 81 TGMMRHDYLELFEGHAE-------FNMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLKIT 133
Query: 360 AQEYQHEARY-NLDRSTDKFILNLTNSAFYEIDQFKSDLREKMYAHINKNIEDEECKEIF 418
H R + S I L N E+++ + E ++++ E +
Sbjct: 134 WHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEE----ECCGFGGTFSVKEPEISAVM 189
Query: 419 KNELIQGIETLHEDI 433
E I+ IE+ H D+
Sbjct: 190 VKEKIKDIESRHVDV 204
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 24.3 bits (51), Expect = 8.2
Identities = 42/207 (20%), Positives = 84/207 (40%), Gaps = 47/207 (22%)
Query: 240 SEKESLKILNKEMKNILGKHYKGYKAVSAQVAFYGLSSALIPGTDFDKNKQKFLKDFKAR 299
S ++SL KE++++L Y G+ ++P + K + LK+F
Sbjct: 45 SMQDSLHFKVKEVQSVLENTYTSM----------GIVKEMLPEDTKREIKIQLLKNF--- 91
Query: 300 ELLYQSHFQQLGEFIAEELIKNSRAKIIQSNCNKALKVVEQ--------LQKAIEITIEK 351
+L SH + F + ++ R +++ N +K++E QKA++ K
Sbjct: 92 -ILANSHVAGVSMFFKDR--EDLRLTLLRDN--DTIKLMENPSLGSNPLAQKAMK---NK 143
Query: 352 RIDPMIKEAQEYQHEAR-YNLDRSTDKFILNLTNSA-----FYEIDQFKSDLRE------ 399
I + ++ + A Y +D F N F+ ID F +++ +
Sbjct: 144 EISKSLPYYRKMPNGAEVYGVDILLPLFKENTQEVVGVLMIFFSIDSFSNEITKNRSDLF 203
Query: 400 ------KMYAHINKNIEDEECKEIFKN 420
K+ NK+++D+ EI+K+
Sbjct: 204 LIGVKGKVLLSANKSLQDKSITEIYKS 230
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,704
Number of Sequences: 1491
Number of extensions: 31303
Number of successful extensions: 230
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 99
length of query: 521
length of database: 494,079
effective HSP length: 82
effective length of query: 439
effective length of database: 371,817
effective search space: 163227663
effective search space used: 163227663
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)