BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645355|ref|NP_207529.1| xanthine guanine
phosphoribosyl transferase (gpt) [Helicobacter pylori 26695]
(153 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223390.1| XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE... 293 1e-81
ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicob... 32 0.008
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 27 0.33
ref|NP_224021.1| putative [Helicobacter pylori J99] 26 0.43
ref|NP_223464.1| putative [Helicobacter pylori J99] 26 0.43
ref|NP_222990.1| putative [Helicobacter pylori J99] 25 0.73
ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylo... 24 1.6
ref|NP_223106.1| putative proline peptidase [Helicobacter p... 24 2.1
ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99] 23 3.6
ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 3.6
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 22 6.1
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 22 8.0
ref|NP_223317.1| putative [Helicobacter pylori J99] 22 8.0
>ref|NP_223390.1| XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori
J99]
Length = 153
Score = 293 bits (751), Expect = 1e-81
Identities = 141/153 (92%), Positives = 148/153 (96%)
Query: 1 MHYSYETFLKDSLELVKQVEQICGVPEALVCVMRGGMTLAHFLSLHWNLREVYGINAISY 60
MHYSYE FLKDSLEL KQVE++CG+PEALVCVMRGGMTL HFLSLHWNLREVYGINAISY
Sbjct: 1 MHYSYEAFLKDSLELAKQVERLCGIPEALVCVMRGGMTLVHFLSLHWNLREVYGINAISY 60
Query: 61 DTTKQQNALKIENIPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQ 120
DTTK+QNALKIEN PTIK+ LKTILVVDEIVDSGNSLEAVLKVL++KHPDKKFYSASLFQ
Sbjct: 61 DTTKRQNALKIENTPTIKDHLKTILVVDEIVDSGNSLEAVLKVLQDKHPDKKFYSASLFQ 120
Query: 121 KTSAKYKADAFLKDAPEWIDFFWEVDLKNLKSH 153
KTSAKYKADAFLKDAPEWIDFFWEVDLKNLKSH
Sbjct: 121 KTSAKYKADAFLKDAPEWIDFFWEVDLKNLKSH 153
>ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 201
Score = 32.0 bits (71), Expect = 0.008
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 12 SLELVKQVEQICGVPEALVCVMRGGMTLAHFLSLHWNLREVYGINAISYDTTKQQNALKI 71
+LEL KQ+++ E + GG+ + L+ +R ++ T + N + +
Sbjct: 46 ALELAKQIQEAHLNIECVCSPAIGGILAGYELARALGVRFIF--------TERVDNTMTL 97
Query: 72 ENIPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEK 107
+K+ K ILV ++I+ +G S KVLEEK
Sbjct: 98 RRGFEVKKNEK-ILVCEDIITTGKSAMECAKVLEEK 132
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 26.6 bits (57), Expect = 0.33
Identities = 17/55 (30%), Positives = 29/55 (51%), Gaps = 4/55 (7%)
Query: 69 LKIENIPTIKERLKTILVVDEIV---DS-GNSLEAVLKVLEEKHPDKKFYSASLF 119
++I+N+P +KER+ D I DS +S++AV+ + EK F +F
Sbjct: 21 IQIQNMPKVKERISVPSKEDTIYSYHDSIKDSIKAVVNISTEKKIKNNFIGGGVF 75
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 26.2 bits (56), Expect = 0.43
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 70 KIENIPTIKERLKTILVVDEI-VDSGNSLEAVLKVLEEKH 108
+I+ P +E + L+ D I +D+G++L+ VL + + KH
Sbjct: 183 QIQTTPLEEELIAITLLSDRIDLDNGDNLDMVLNLAQPKH 222
>ref|NP_223464.1| putative [Helicobacter pylori J99]
Length = 200
Score = 26.2 bits (56), Expect = 0.43
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 56 NAISYDTTKQQNALKIENIPTIKERLKTILVVDEIVDSGNSLEAVLKV 103
+A+ ++ K A +ENI K RLK + + +D L L++
Sbjct: 75 SAVFFEQNKNAYATLLENISLFKNRLKKEIEIQTFLDDAFKLLPTLRL 122
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 25.4 bits (54), Expect = 0.73
Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 14/68 (20%)
Query: 51 EVYGINAISYDTTKQQNALKIENIPTIKERLKTI----------LVVDEIVDSGNSLEAV 100
E YG+N D ++ N I NIP I + I L + + ++ SL V
Sbjct: 100 ESYGVNPFK-DLIERPN---IPNIPNIANPIAIIDGISFIKSMRLKHENLKNNQTSLGEV 155
Query: 101 LKVLEEKH 108
LK+L++KH
Sbjct: 156 LKLLDQKH 163
>ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 402
Score = 24.3 bits (51), Expect = 1.6
Identities = 13/45 (28%), Positives = 26/45 (56%), Gaps = 1/45 (2%)
Query: 75 PTIKERLKTILVVDEIVDSGNSL-EAVLKVLEEKHPDKKFYSASL 118
PT K + L ++++++ + E + K+L++KH + F SA L
Sbjct: 87 PTGKNETRKPLNREQVLENAKTYKEQIYKILDQKHTEVCFNSAWL 131
>ref|NP_223106.1| putative proline peptidase [Helicobacter pylori J99]
Length = 357
Score = 23.9 bits (50), Expect = 2.1
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 27 EALVCVMRGGMTLAHFLSLHWNLREVYGINAISYDTTKQQNALKIENIPTIKERLKTIL 85
E + +R GMT SL + YG +T L I +P I R +TIL
Sbjct: 263 EKAISGIRAGMTGKEADSLARGVISDYGYGQYFTHSTGHGIGLDIHELPYISSRSETIL 321
>ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99]
Length = 316
Score = 23.1 bits (48), Expect = 3.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 48 NLREVYGINAISYD-TTKQQNALKIENIPTIKERLKTILVVDEIVDSGNSLEAVLK 102
N + +NA D T+ Q LKI I K+ LKT +D N+ + +LK
Sbjct: 249 NTAPLDALNAYLLDPNTECQTPLKITEIEAFKKELKT-----HNIDLENTAQKLLK 299
>ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 23.1 bits (48), Expect = 3.6
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 98 EAVLKVLEEKHPDKKFYSASLFQKTSAKYKAD 129
E ++ E K+ KK+ + SL KT ++KAD
Sbjct: 279 EGLMSETEIKNILKKYGAYSLVTKTYMRFKAD 310
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 22.3 bits (46), Expect = 6.1
Identities = 18/63 (28%), Positives = 29/63 (45%)
Query: 43 LSLHWNLREVYGINAISYDTTKQQNALKIENIPTIKERLKTILVVDEIVDSGNSLEAVLK 102
L++++ EV G S K ALK I I ++ TI I+D S + ++K
Sbjct: 140 LNVNFIGEEVLGEEEASARFEKYSQALKSNYIQYISIKITTIFSQINILDFEYSKKEIVK 199
Query: 103 VLE 105
L+
Sbjct: 200 RLD 202
Score = 21.9 bits (45), Expect = 8.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 98 EAVLKVLEEKHPDKKFYSASLFQKTSA 124
EA+LK LE DK +S F + A
Sbjct: 544 EAILKALEVAKSDKSRFSQKSFTEIHA 570
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 21.9 bits (45), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 94 GNSLEAVLKVLEEKHPDKKFYSA 116
GN LE + +L + K FYS+
Sbjct: 89 GNQLEGISNILNQIGKRKDFYSS 111
>ref|NP_223317.1| putative [Helicobacter pylori J99]
Length = 360
Score = 21.9 bits (45), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 64 KQQNALKIENIPTIKERLKTILV 86
K+ N LK+ P+ E LKTI +
Sbjct: 254 KENNYLKVGKSPSAIEILKTIAI 276
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,312
Number of Sequences: 1491
Number of extensions: 6809
Number of successful extensions: 28
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 14
length of query: 153
length of database: 494,079
effective HSP length: 70
effective length of query: 83
effective length of database: 389,709
effective search space: 32345847
effective search space used: 32345847
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)