BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645357|ref|NP_207531.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(158 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicoba... 285 3e-79
ref|NP_223704.1| putative [Helicobacter pylori J99] 28 0.15
ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-AC... 25 0.76
ref|NP_222769.1| sodium/proline symporter [Helicobacter pyl... 25 0.76
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 24 2.2
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 3.8
ref|NP_222849.1| L-lactate permease [Helicobacter pylori J99] 23 3.8
ref|NP_223828.1| putative [Helicobacter pylori J99] 22 6.4
ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacte... 22 6.4
>ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicobacter pylori J99]
Length = 158
Score = 285 bits (730), Expect = 3e-79
Identities = 147/157 (93%), Positives = 151/157 (95%)
Query: 1 MDKFSLRACFLTLFFSGYSKKAPGTIGSLVALLLGLPVLIFSANTLFLGAVFVGLIAIAQ 60
M+KF RACFLTLFFSGYSKKAPGTIGSLVALLLGLP+LIFSANTLFLGA+FVGLIAI Q
Sbjct: 1 MNKFGWRACFLTLFFSGYSKKAPGTIGSLVALLLGLPILIFSANTLFLGAIFVGLIAITQ 60
Query: 61 IDKEEEETKRHDSSYIVIDELVGMWLAMAISGLSLAGVILSFIFFRIYDITKPSLIGKID 120
IDKEEEETKRHDSSYIVIDELVGMWLAMAISGLSL GVILSFIFFRIYDITKPSLIGKID
Sbjct: 61 IDKEEEETKRHDSSYIVIDELVGMWLAMAISGLSLVGVILSFIFFRIYDITKPSLIGKID 120
Query: 121 KEVKGGLGVVADDALAGVLAGLSALLVIHILGFFNIK 157
KEVKGGLGVVADDALAGVLAGLS LL I+ILGFFNIK
Sbjct: 121 KEVKGGLGVVADDALAGVLAGLSTLLAINILGFFNIK 157
>ref|NP_223704.1| putative [Helicobacter pylori J99]
Length = 252
Score = 27.7 bits (60), Expect = 0.15
Identities = 16/67 (23%), Positives = 36/67 (52%), Gaps = 5/67 (7%)
Query: 1 MDKFSLRACFLTLFFSGYSKKAPGTIGSLVALLLGLPVLIFSANTLFLGAVFVGLIAIAQ 60
++ ++L++ + + + + K+P I +L LL P +F F+G +F L+
Sbjct: 2 LETYALKSGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVF-----FMGDIFHVLVGYLP 56
Query: 61 IDKEEEE 67
+DKE+++
Sbjct: 57 LDKEQQK 63
>ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-
ACETYLGLUCOSAMINYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 25.4 bits (54), Expect = 0.76
Identities = 15/38 (39%), Positives = 24/38 (62%), Gaps = 4/38 (10%)
Query: 23 PGTIGSLVA-LLLGLPVLIFSANTLFL---GAVFVGLI 56
P ++ L+A ++LG VL F + +FL GA F+GL+
Sbjct: 171 PSSLSCLLAYMVLGFMVLNFPSGKIFLGDGGAYFLGLV 208
>ref|NP_222769.1| sodium/proline symporter [Helicobacter pylori J99]
Length = 496
Score = 25.4 bits (54), Expect = 0.76
Identities = 16/70 (22%), Positives = 35/70 (49%), Gaps = 5/70 (7%)
Query: 31 ALLLGLPVLIFSANTLFLGAVFVGLIAIAQIDKEEEETKRHDSSYIVIDELV-GMWLAMA 89
A +G+ ++ S +GA +GL+ +A + K + + + +IV+ +L+ W+
Sbjct: 273 ATTIGISWMVIS----LIGACVMGLLGVAYVHKFDLSLEDPEKIFIVMSQLLFNPWITGI 328
Query: 90 ISGLSLAGVI 99
+ LA V+
Sbjct: 329 LLSAILAAVM 338
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 23.9 bits (50), Expect = 2.2
Identities = 15/58 (25%), Positives = 27/58 (45%)
Query: 50 AVFVGLIAIAQIDKEEEETKRHDSSYIVIDELVGMWLAMAISGLSLAGVILSFIFFRI 107
A+F+GLI + Q+ E+ K + + L L + GL + + SF ++I
Sbjct: 267 ALFIGLIELFQVISEKLHLKFENRLLSTLQSLEFTDLGYYLVGLFVIAFLGSFFLWKI 324
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.1 bits (48), Expect = 3.8
Identities = 7/16 (43%), Positives = 14/16 (86%)
Query: 58 IAQIDKEEEETKRHDS 73
I+++ K+E+E KRH++
Sbjct: 195 ISEVKKQEQEIKRHEN 210
>ref|NP_222849.1| L-lactate permease [Helicobacter pylori J99]
Length = 549
Score = 23.1 bits (48), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 9/52 (17%)
Query: 24 GTIGSLVALLLGLP-VLIFSANT--------LFLGAVFVGLIAIAQIDKEEE 66
G++ L+A LGLP VL +ANT + ++ + A+ + KE E
Sbjct: 462 GSLQMLIATQLGLPEVLFLAANTSGGVVGKMISPQSIAIACAAVGLVGKESE 513
>ref|NP_223828.1| putative [Helicobacter pylori J99]
Length = 391
Score = 22.3 bits (46), Expect = 6.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 95 LAGVILSFIFFRIY 108
LAGV+ SF+F R+Y
Sbjct: 257 LAGVVGSFLFGRLY 270
>ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacter pylori J99]
Length = 407
Score = 22.3 bits (46), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 134 ALAGVLAGLSALLVIHILGFFN 155
ALA ++ G AL + +GFFN
Sbjct: 304 ALAILIGGKIALFALTFVGFFN 325
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.146 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,745
Number of Sequences: 1491
Number of extensions: 6311
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 158
length of database: 494,079
effective HSP length: 71
effective length of query: 87
effective length of database: 388,218
effective search space: 33774966
effective search space used: 33774966
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)