BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645361|ref|NP_207535.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(161 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223396.1| HIT FAMILY PROTEIN [Helicobacter pylori J99] 322 4e-90
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 24 2.3
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 24 2.3
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 24 2.3
ref|NP_223725.1| putative outer membrane protein [Helicobac... 23 3.0
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 23 3.9
ref|NP_223277.1| putative chemotaxis protein [Helicobacter ... 22 6.6
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 6.6
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 22 8.7
ref|NP_223389.1| putative [Helicobacter pylori J99] 22 8.7
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 22 8.7
ref|NP_222923.1| putative [Helicobacter pylori J99] 22 8.7
>ref|NP_223396.1| HIT FAMILY PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 322 bits (824), Expect = 4e-90
Identities = 153/161 (95%), Positives = 156/161 (96%)
Query: 1 MQHLYAPWRESYLKGKNKSCVFCEISQNPAKDSENRVLYRNSDLFVVMNAYPYNPGHLLI 60
MQHLYAPWRESYLK KNKSCVFC ISQNP KDSENRVLYRNSDLFVVMNAYPYNPGHLLI
Sbjct: 1 MQHLYAPWRESYLKEKNKSCVFCGISQNPTKDSENRVLYRNSDLFVVMNAYPYNPGHLLI 60
Query: 61 IPHVHQASVELLDLNTWLNMNALAPKVLKALYAYGAQGINLGLNLHRNAGAGIPEHLHMH 120
+PH HQASVELLDLNTWLNMNALAPK+LKALYAYGAQGINLGLNLHRNAGAGIPEHLHMH
Sbjct: 61 VPHAHQASVELLDLNTWLNMNALAPKILKALYAYGAQGINLGLNLHRNAGAGIPEHLHMH 120
Query: 121 LVPRFLGDSNFMSVIAQTRVCGMDLNETYLTLKNLLEKELG 161
LVPRFLGDSNF+SVIAQTRVCGMDLNETYL LKNLLEKELG
Sbjct: 121 LVPRFLGDSNFISVIAQTRVCGMDLNETYLALKNLLEKELG 161
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 23.9 bits (50), Expect = 2.3
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 26 SQNPA------KDSENRVLYRNSDLFVVMNAYPYN 54
SQNP ++S Y N+ L ++ N PYN
Sbjct: 104 SQNPVYVTAYNQESAEEAGYGNNSLIMIQNFLPYN 138
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 23.9 bits (50), Expect = 2.3
Identities = 11/34 (32%), Positives = 16/34 (46%)
Query: 6 APWRESYLKGKNKSCVFCEISQNPAKDSENRVLY 39
+PW ++ LK +S I NP D E L+
Sbjct: 68 SPWEKNLLKEIERSIQEANIGVNPNNDGETIKLF 101
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 23.9 bits (50), Expect = 2.3
Identities = 17/55 (30%), Positives = 24/55 (42%)
Query: 58 LLIIPHVHQASVELLDLNTWLNMNALAPKVLKALYAYGAQGINLGLNLHRNAGAG 112
LL I HQ +EL + + + KV + A G +G L+ AGAG
Sbjct: 244 LLGIAKKHQDCIELRVHPSMIKNECMLSKVDGVMNAISVIGDKVGETLYYGAGAG 298
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 23.5 bits (49), Expect = 3.0
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 26 SQNPA------KDSENRVLYRNSDLFVVMNAYPYN 54
SQNP KD+ Y N+ + V+ N PYN
Sbjct: 123 SQNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYN 157
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 23.1 bits (48), Expect = 3.9
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 8 WRESYLKGKNKSCVFCEISQNPAKDSENRVLYRNSDLFVV 47
W + L K+ F IS + + YRN +LF V
Sbjct: 53 WLTNPLNAHEKNGAFVGISLEVGRADQKTNAYRNGELFQV 92
>ref|NP_223277.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 313
Score = 22.3 bits (46), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 56 GHLLIIPHVHQASVELLDLNTWLNMNALAP 85
G +L V S+ L+D+ WL+ NA P
Sbjct: 59 GVMLGFLSVRGESIPLVDVKRWLHYNANDP 88
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.3 bits (46), Expect = 6.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 131 FMSVIAQTRVCGMDLNETYL 150
F + QT + G+DLN+ Y+
Sbjct: 61 FKGELDQTEIKGIDLNDLYI 80
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 21.9 bits (45), Expect = 8.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 72 LDLNTWLNMNALAPKVLKALYAYGAQ---GINLGLNL 105
L N LN N AP + KAL Q G N +NL
Sbjct: 1023 LTANGALNFNGYAPSLTKALMNVSGQFVLGNNGDINL 1059
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 21.9 bits (45), Expect = 8.7
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 30 AKDSENRVLYRNSDLFVVMNAYPYNPGHLLIIPHVHQASVEL 71
A + + +L +S+L P PGH I+P + ++ L
Sbjct: 396 APEVDGEILINDSELTT-----PLKPGHYTIVPSAFKDNILL 432
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 21.9 bits (45), Expect = 8.7
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 11 SYLKGKNKSCVFCEISQNPAKDSENRVLYRNS 42
SYLKG N ++ I + P ++ R+S
Sbjct: 250 SYLKGDNLETIYNTIQKTPNSKGFQSLVSRSS 281
>ref|NP_222923.1| putative [Helicobacter pylori J99]
Length = 368
Score = 21.9 bits (45), Expect = 8.7
Identities = 16/51 (31%), Positives = 19/51 (36%)
Query: 38 LYRNSDLFVVMNAYPYNPGHLLIIPHVHQASVELLDLNTWLNMNALAPKVL 88
L RN L + + GHLL I + E L L L PK L
Sbjct: 103 LQRNKKLALANKESLVSAGHLLDISQITPVDSEHFGLWALLQNKTLKPKSL 153
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,352
Number of Sequences: 1491
Number of extensions: 7351
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 12
length of query: 161
length of database: 494,079
effective HSP length: 71
effective length of query: 90
effective length of database: 388,218
effective search space: 34939620
effective search space used: 34939620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)