BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644706|ref|NP_206876.1| ribosomal protein S20
(rps20) [Helicobacter pylori 26695]
(89 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter py... 168 2e-44
ref|NP_222912.1| putative [Helicobacter pylori J99] 28 0.033
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 0.21
ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylor... 24 0.48
ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDI... 23 0.81
ref|NP_224090.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 22 2.4
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 22 3.1
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 22 3.1
ref|NP_224019.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 21 4.0
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 21 4.0
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 21 4.0
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 21 5.3
ref|NP_223290.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 21 5.3
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 21 5.3
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 20 6.9
ref|NP_223261.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 20 9.0
ref|NP_222774.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 20 9.0
>ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter pylori J99]
Length = 89
Score = 168 bits (425), Expect = 2e-44
Identities = 87/89 (97%), Positives = 89/89 (99%)
Query: 1 MANHKSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDVAKAQERLKIANKELHK 60
MANHKSAEKRIRQTIKRTERNRFYKTK+KNIIKAVREAVA+NDVAKAQERLKIANKELHK
Sbjct: 1 MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAINDVAKAQERLKIANKELHK 60
Query: 61 FVSKGILKKNTASRKVSRLNASVKKIALA 89
FVSKGILKKNTASRKVSRLNASVKKIALA
Sbjct: 61 FVSKGILKKNTASRKVSRLNASVKKIALA 89
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 28.1 bits (61), Expect = 0.033
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 9 KRIRQTIKRTERNRFY-KTKIKNIIKAVREAVAVNDVAKAQERLKIANKELHKFVSK 64
+ + + K T+ +F KT+IK+IIK + E +N+ K Q +N E H + K
Sbjct: 177 EELDKIFKTTDFTKFTPKTEIKDIIKEIDEKYPINENFKRQFNEFESNIEKHDEIKK 233
Score = 20.0 bits (40), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 28 IKNIIKAVREAVAVNDVAK 46
I+ I K E+ AVNDV+K
Sbjct: 271 IQQICKNYIESHAVNDVSK 289
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter
pylori J99]
Length = 2399
Score = 25.4 bits (54), Expect = 0.21
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 58 LHKFVSKGILKKNTASRKVSRLNASVKK 85
+ +F+SKG K N S+K LN +K+
Sbjct: 9 ISRFISKGSFKLNKISKKFFTLNQILKR 36
>ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 806
Score = 24.3 bits (51), Expect = 0.48
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 36 REAVAVNDVAKAQERLKIANKELHKFVSKGILKK 69
R + VN A +E + +A KEL K++ +KK
Sbjct: 759 RAELKVNINASKEEIIILAKKELEKYLENASVKK 792
>ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR
[Helicobacter pylori J99]
Length = 257
Score = 23.5 bits (49), Expect = 0.81
Identities = 9/27 (33%), Positives = 20/27 (73%), Gaps = 1/27 (3%)
Query: 44 VAKAQER-LKIANKELHKFVSKGILKK 69
+ K QE+ L++ N+ + + ++KG+LK+
Sbjct: 218 INKHQEKALELINQAMRRLINKGVLKR 244
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/47 (29%), Positives = 25/47 (52%), Gaps = 4/47 (8%)
Query: 42 NDVAKAQERLKIANKELHKFVSKGILKKNTASRKVSRLNASVKKIAL 88
ND A+ +I N +L + K LK+N S+++A ++K +L
Sbjct: 107 NDTNNAEAEGQIENLDLPDLIGKDSLKRNDE----SQVDAMMQKASL 149
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 21.9 bits (45), Expect = 2.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 29 KNIIKAVREAVAVNDVAKAQERLKIANKELHKF 61
+N I A + +V + ERL NK HKF
Sbjct: 346 QNKILANIRSASVKKILSEIERLSKDNKNYHKF 378
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 21.6 bits (44), Expect = 3.1
Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 2/43 (4%)
Query: 27 KIKNIIKAVREAVAVNDVAKAQERLKIANKELHKFVSKGILKK 69
KI+ + +V V V + K ERLK K+ KFV +K
Sbjct: 121 KIQECVPSV--GVEVPNEEKVNERLKQLAKDYAKFVDTDSQRK 161
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 37 EAVAVNDVAKAQERLKIANKELHK 60
E V V K ++L+I NK HK
Sbjct: 363 EIVETMRVIKRDQKLEINNKNAHK 386
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 21.2 bits (43), Expect = 4.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 22 RFYKTKIKNIIKAVREAVAVNDVAKAQERLKIANKELHKFVSKGILKKN 70
R YK ++ KA E + K +ERLK + + + + + KN
Sbjct: 94 RLYKHRLGQKSKAFIEESIYDRHDKEKERLKFLTAQNYNSIFENTVLKN 142
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 21.2 bits (43), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 44 VAKAQERLKIANKELH 59
V AQERL IAN L+
Sbjct: 1010 VFNAQERLNIANANLN 1025
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 21.2 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 28 IKNIIKAVREAVAVN 42
IK +IK VR+++ VN
Sbjct: 239 IKEVIKKVRQSLGVN 253
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 21.2 bits (43), Expect = 4.0
Identities = 13/60 (21%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
Query: 17 RTERNRFYKTKIKNIIKAVREAVAVNDVAKA--QERLKIANKELHKFVSKGILKKNTASR 74
+T N +I+N I A+++ + ++ KA +++ K + K + + + KN A +
Sbjct: 548 KTNLNENDANEIQNAINALKDCIKNDNATKAELEDKTKALTQAAQK-LGEAMANKNNAEQ 606
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 20.8 bits (42), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (50%)
Query: 48 QERLKIANKELHKFVSKGILKKNTASRKVSRLNASVKKIAL 88
QE +K A KEL + +K I+ S K + V+ IAL
Sbjct: 155 QEEVKTAVKELLEAGAKAIVICLLQSHKNAESERIVRDIAL 195
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 20.8 bits (42), Expect = 5.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 41 VNDVAKAQERLKIANKELHKFVSKG 65
+ V+ + K KEL ++SKG
Sbjct: 142 IQGVSHIKNNYKFFTKELDNYISKG 166
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 20.8 bits (42), Expect = 5.3
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 13 QTIKRTERNRFYKTKIKNIIKAVREAVAVNDVAKAQER----LKIANKELHKFVSKG 65
Q + ++E+NR + + + V + A+ +AKA +R L +NK + F+ G
Sbjct: 549 QKMLQSEKNRVLNIESELQKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLG 605
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 20.8 bits (42), Expect = 5.3
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 27 KIKNIIKAVREAVAV 41
K+KN+IK +E +++
Sbjct: 560 KVKNVIKVTKEPISL 574
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 53 IANKELHKFVSKGILKKNTASRKVSRL 79
+ +KELH + K KNT ++ L
Sbjct: 205 LKDKELHALIKKKYEIKNTTGYSLNAL 231
>ref|NP_223261.1| putative [Helicobacter pylori J99]
Length = 192
Score = 20.4 bits (41), Expect = 6.9
Identities = 7/37 (18%), Positives = 18/37 (47%)
Query: 41 VNDVAKAQERLKIANKELHKFVSKGILKKNTASRKVS 77
+ +A + +++A +HK + K N +K++
Sbjct: 70 IEKIATKRATIRVAQNIVHKLKEAYLSKSNRIKQKIT 106
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 20.0 bits (40), Expect = 9.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 5 KSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDVAK 46
K R+ T+K E+N + + ++E V N+VAK
Sbjct: 485 KLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAK 526
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 20.0 bits (40), Expect = 9.0
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 17 RTERNRFYKTKIKNIIKAVREAVAVNDVAKAQERLKIANKEL-HKFVSKGILKKNTA 72
+TE++ K + + R ++ +ERLK N EL HK + K+N A
Sbjct: 110 KTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITE--LTKENKA 164
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 20.0 bits (40), Expect = 9.0
Identities = 6/14 (42%), Positives = 12/14 (84%)
Query: 8 EKRIRQTIKRTERN 21
EKR+++T+K ++N
Sbjct: 255 EKRLKKTLKEIQQN 268
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.126 0.313
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,505
Number of Sequences: 1491
Number of extensions: 2548
Number of successful extensions: 23
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 89
length of database: 494,079
effective HSP length: 65
effective length of query: 24
effective length of database: 397,164
effective search space: 9531936
effective search space used: 9531936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)