BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645370|ref|NP_207544.1| polar flagellin (flaG)
[Helicobacter pylori 26695]
(119 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter p... 233 1e-63
ref|NP_223621.1| putative cation efflux system protein [Hel... 33 0.002
ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacte... 32 0.005
ref|NP_223310.1| putative [Helicobacter pylori J99] 27 0.21
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 26 0.35
ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99] 25 0.60
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 25 0.60
ref|NP_224174.1| putative [Helicobacter pylori J99] 25 0.78
ref|NP_223020.1| putative abc transporter, ATP-binding prot... 24 1.0
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 23 1.7
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 23 2.3
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 23 2.3
ref|NP_223334.1| putative [Helicobacter pylori J99] 23 2.3
ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter... 23 3.0
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 22 3.9
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 22 3.9
ref|NP_223825.1| putative [Helicobacter pylori J99] 22 5.1
ref|NP_223661.1| putative [Helicobacter pylori J99] 22 5.1
ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [H... 22 6.6
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 6.6
ref|NP_223176.1| putative [Helicobacter pylori J99] 22 6.6
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 21 8.7
ref|NP_222848.1| putative [Helicobacter pylori J99] 21 8.7
>ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter pylori J99]
Length = 119
Score = 233 bits (593), Expect = 1e-63
Identities = 118/119 (99%), Positives = 118/119 (99%)
Query: 1 MVNEVQGIGIPTSHTSVQTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEE 60
MVNEVQGIGIPTSH SVQTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEE
Sbjct: 1 MVNEVQGIGIPTSHASVQTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEE 60
Query: 61 MKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVELMQRMRDVIGIIFDKRG 119
MKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVELMQRMRDVIGIIFDKRG
Sbjct: 61 MKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVELMQRMRDVIGIIFDKRG 119
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 33.1 bits (74), Expect = 0.002
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 27 RTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDA 86
+T +++ D K TI + ++ ++ +++ R+G +T +GLV+S+KDA
Sbjct: 231 QTASLSLEDIGKITISTNLGHLHIKDFAKVISQSRTRLGFVTKDGVGETTEGLVLSLKDA 290
Query: 87 NGDKVIREIPSK 98
N ++I ++ K
Sbjct: 291 NTKEIITQVYQK 302
>ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 405
Score = 32.0 bits (71), Expect = 0.005
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 23 KEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVS 82
+EIS + + V ES T D P+LE + E++ G+ + YN K L ++
Sbjct: 317 REISPCDVVGPVCESSDTFLKDANLPELEPGDKLAIEKVGAYGSSMASQYNSRPKLLELA 376
Query: 83 VKDANGDKVIREIPSKEAVELMQRM 107
++D IR I +EA+E + R+
Sbjct: 377 LEDHK----IRVIRKREALEDLWRL 397
>ref|NP_223310.1| putative [Helicobacter pylori J99]
Length = 135
Score = 26.6 bits (57), Expect = 0.21
Identities = 19/65 (29%), Positives = 26/65 (39%), Gaps = 7/65 (10%)
Query: 18 QTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIK 77
Q P K +S N + ++ P LE L R NE K D + +TI+
Sbjct: 37 QNIPNKSLSLENLNEQIKNLQSV-------PALEKLKNRFNERFKICPKDKETLWLETIQ 89
Query: 78 GLVVS 82
LV S
Sbjct: 90 NLVAS 94
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 25.8 bits (55), Expect = 0.35
Identities = 16/70 (22%), Positives = 32/70 (44%), Gaps = 3/70 (4%)
Query: 17 VQTTPTKEISRTNTINTVDESKT---TIDPDQYKPKLELLSERLNEEMKRIGTDINFSYN 73
+ P +++ TN + + +S I+P+Q + L+ N K++G + + N
Sbjct: 402 ISKLPYNQVNVTNIVMSPKDSTAGQYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNN 461
Query: 74 DTIKGLVVSV 83
+ GL V V
Sbjct: 462 GALNGLGVQV 471
>ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99]
Length = 403
Score = 25.0 bits (53), Expect = 0.60
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 53 LSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVELMQRMRDVI 111
L E + E ++ +G ++ ND +V++ N I IP+ E +E+ + ++++
Sbjct: 339 LRESVCEGLENLGIALHKPTNDNPGSALVNLSQPNTKIQILRIPTDEELEIALQAKEMV 397
Score = 23.9 bits (50), Expect = 1.3
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Query: 42 DPDQYKPKLELLSERLNEEMKRIGTDINFSYND-TIKGLVVSVKDANGDKVIREIPSKEA 100
D + KP L+E++ EE+ ++ + +ND +K +V A G +IRE +K
Sbjct: 19 DMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVIKDHAIGLLMIRENLTKMG 78
Query: 101 VELMQRMRDVIG 112
+ D IG
Sbjct: 79 IIKDFNQIDAIG 90
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 25.0 bits (53), Expect = 0.60
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 47 KPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDAN 87
KPK + S RL +++KR +N KGL+ K N
Sbjct: 98 KPKELVFSARLTDDLKRRDFSMNAIAYSPTKGLIDPFKGQN 138
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 24.6 bits (52), Expect = 0.78
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 22 TKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGT--------DINFSYN 73
TKE + N K ++ D++ L+L ER+N+ + +G + NFS
Sbjct: 66 TKEFEKKRETN----EKLSLQMDEFLDDLQLSGERINDLEEVVGVNRPEEEKEEGNFSSR 121
Query: 74 DTIKGLVVSVKDANGDKVIREIPSKEAVELMQRMRDVIGIIFDKR 118
+ G+ K ++R IP+ +E +R + F+KR
Sbjct: 122 LDVAGITGLQKSF----IMRLIPNDYPLESYRR----VSAAFNKR 158
>ref|NP_223020.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 233
Score = 24.3 bits (51), Expect = 1.0
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 45 QYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKD 85
QYKP LN +K + NF T K L+ +KD
Sbjct: 200 QYKP--------LNSILKSVAKTFNFKEKPTTKDLLALLKD 232
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 23.5 bits (49), Expect = 1.7
Identities = 10/46 (21%), Positives = 23/46 (49%)
Query: 2 VNEVQGIGIPTSHTSVQTTPTKEISRTNTINTVDESKTTIDPDQYK 47
+N+ +G+ + + S + + +S +IN D +D DQ++
Sbjct: 221 LNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESARLDDDQWE 266
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 23.1 bits (48), Expect = 2.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 48 PKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIRE 94
P LEL S NE+ +I + N D + L+ ++ + N + + +
Sbjct: 339 PVLELFSHEYNEKSLKIKENNNPPLIDEMLDLLANINEKNAIEYLHD 385
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 23.1 bits (48), Expect = 2.3
Identities = 12/43 (27%), Positives = 21/43 (47%)
Query: 41 IDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSV 83
I+P+Q + L+ N K++G + + N + GL V V
Sbjct: 442 INPEQQSNLSQALAAMSNNPFKKVGMISSQNNNGALNGLGVQV 484
>ref|NP_223334.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.1 bits (48), Expect = 2.3
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 5 VQGIGIPTSHTSVQTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRI 64
++ + PT++ + T ++ T ++E + I D Y+ +
Sbjct: 174 IESLNNPTNYPPINLVVTPALAPWKTTVEIEEHRKNITFDHYR------------QSSAQ 221
Query: 65 GTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
IN ND +G VVS K + ++ PS
Sbjct: 222 NIKINEIANDLKQGEVVSNKLIANTLITQKAPS 254
>ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter pylori J99]
Length = 344
Score = 22.7 bits (47), Expect = 3.0
Identities = 9/43 (20%), Positives = 25/43 (57%)
Query: 47 KPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGD 89
K + ++E+LN+ +GT+++ +++K + ++D G+
Sbjct: 301 KKSYDEIAEKLNDLGYPVGTELSPEQRESLKKRLEKLEDKGGN 343
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 22.3 bits (46), Expect = 3.9
Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 6/49 (12%)
Query: 45 QYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIR 93
Q PK++ ER++ K D +SY+D+IK + +V + + +K I+
Sbjct: 24 QNMPKVK---ERISVPSKE---DTIYSYHDSIKDSIKAVVNISTEKKIK 66
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 22.3 bits (46), Expect = 3.9
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDAN---GDKVI 92
+L++E+K+ D+ F+++ LVV N GDK++
Sbjct: 225 QLSQEVKKYRADLGFAFDGDADRLVVVDNLGNIVHGDKLL 264
>ref|NP_223825.1| putative [Helicobacter pylori J99]
Length = 253
Score = 21.9 bits (45), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 68 INFSYNDTIKGLVVSVKDANGDKVIREI 95
+NF+YN +++ + + NG VIR +
Sbjct: 146 MNFTYNGSLRSMPPIYRAENGLLVIRPL 173
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 21.9 bits (45), Expect = 5.1
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 14 HTSVQTTPTKEISRTNTINTVDESKTTIDPDQYK-PKLELLSERLNEEMKRIGTDINFSY 72
+ S+ T+ S+ + N ++ ++ + K P + + + N + N Y
Sbjct: 134 NASMSEELTQNNSKLSHFNENSIAQNSVGQNNVKEPNTKSNNSKQNHSLSNSDLTSNTDY 193
Query: 73 NDTIKGLVVSVKDANGDKV 91
N + + + DANG+ +
Sbjct: 194 NKLVADMFENQMDANGNYI 212
>ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [Helicobacter pylori J99]
Length = 405
Score = 21.6 bits (44), Expect = 6.6
Identities = 22/89 (24%), Positives = 38/89 (41%), Gaps = 9/89 (10%)
Query: 34 VDESKTTIDPDQYKPKLELLS-------ERLNEEMKRIGTDI--NFSYNDTIKGLVVSVK 84
++E I Y LEL S R E K++ + S+N + L+V+ K
Sbjct: 184 IEEKAQKIAQISYDEMLELASMGAKVLLNRSVELAKKLSVKLVTRNSFNHSEGTLIVAEK 243
Query: 85 DANGDKVIREIPSKEAVELMQRMRDVIGI 113
D G+++ I S A++ Q + G+
Sbjct: 244 DFKGERMETPIVSGIALDKNQARVSMEGV 272
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.6 bits (44), Expect = 6.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 52 LLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKD 85
L ++ L+ +KR ++ + N ++GL +VKD
Sbjct: 1114 LANDYLSGNVKRKLKEVKEAINQGVEGLEANVKD 1147
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.6 bits (44), Expect = 6.6
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 54 SERLNEEMKRIGTDINFSYNDTI 76
++ L E+++ TDINF +D +
Sbjct: 121 NDELYEQIRATNTDINFISSDLL 143
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 21.2 bits (43), Expect = 8.7
Identities = 14/47 (29%), Positives = 20/47 (41%), Gaps = 1/47 (2%)
Query: 29 NTINT-VDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYND 74
NT T E I + K E+L N+ M +G +I +Y D
Sbjct: 85 NTYGTSTKEVVLDIAQNNLKYLYEILQNLENDNMTDLGINIKITYKD 131
>ref|NP_222848.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.2 bits (43), Expect = 8.7
Identities = 11/53 (20%), Positives = 26/53 (48%)
Query: 51 ELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVEL 103
E L ++L + + G + +++ L V+ + +IR++ + E +EL
Sbjct: 113 EFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIEL 165
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.132 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,456
Number of Sequences: 1491
Number of extensions: 4687
Number of successful extensions: 30
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 24
length of query: 119
length of database: 494,079
effective HSP length: 67
effective length of query: 52
effective length of database: 394,182
effective search space: 20497464
effective search space used: 20497464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 43 (21.2 bits)