BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645372|ref|NP_207546.1| flagellar protein (fliS)
[Helicobacter pylori 26695]
(126 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223408.1| putative FLAGELLAR PROTEIN [Helicobacter p... 249 2e-68
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 23 1.9
ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylor... 23 2.5
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 23 2.5
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 23 3.3
ref|NP_224063.1| putative thiophene/furan oxidation protein... 22 5.7
ref|NP_223475.1| putative osmoprotection binding protein [H... 22 5.7
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 22 7.4
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 22 7.4
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 21 9.6
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 21 9.6
>ref|NP_223408.1| putative FLAGELLAR PROTEIN [Helicobacter pylori J99]
Length = 126
Score = 249 bits (635), Expect = 2e-68
Identities = 125/126 (99%), Positives = 126/126 (99%)
Query: 1 MQYANAYQAYQHNRVSVESPAKLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDI 60
MQYANAYQAYQHNRVSVESPAKLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDI
Sbjct: 1 MQYANAYQAYQHNRVSVESPAKLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDI 60
Query: 61 FTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEAWREI 120
FTELLNILDYEKGG+VAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEAWREI
Sbjct: 61 FTELLNILDYEKGGKVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEAWREI 120
Query: 121 HSDELA 126
HSDELA
Sbjct: 121 HSDELA 126
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 23.5 bits (49), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 10/47 (21%)
Query: 86 HQIKVLTQANVENDASK----------IDLVLNVARGLLEAWREIHS 122
+Q KV NV ND S IDL+ + ARGL+E+ I++
Sbjct: 293 NQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYA 339
>ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 806
Score = 23.1 bits (48), Expect = 2.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 29 EGILRFSSQAKRCIENEDIEKKIYYINRVTDIFT 62
E I+ + ++ +EN ++K+IY N++ + T
Sbjct: 772 EIIILAKKELEKYLENASVKKEIYVPNKLVNFVT 805
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.1 bits (48), Expect = 2.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 74 GEVAVYLTGLYTHQIKVLTQANVENDASKI 103
GE G+Y H+I+ + +N++ +KI
Sbjct: 466 GEEGYVYAGIYEHEIERVELSNMQETQTKI 495
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 22.7 bits (47), Expect = 3.3
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 YEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNV 109
+E + + LT YT Q++ + VEN +S +D + N+
Sbjct: 524 FENAYQFIIDLT--YTKQMEEVLDEIVENKSSYVDFISNL 561
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 21.9 bits (45), Expect = 5.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 64 LLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDL 105
+LN L + GE+ +++ + +K+L + V D S+ D+
Sbjct: 148 VLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDI 189
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 21.9 bits (45), Expect = 5.7
Identities = 12/39 (30%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
Query: 22 KLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDI 60
K +L+ G+L F++ I ED +K Y I +D+
Sbjct: 374 KEFNLLWVGLLGFNNTYSLAISKEDAQK--YAIETFSDL 410
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 21.6 bits (44), Expect = 7.4
Identities = 13/55 (23%), Positives = 22/55 (39%)
Query: 44 NEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVEN 98
NE E+ Y+N+V + + N + E YL + TQ+ + N
Sbjct: 50 NEKYEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPIFN 104
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 21.6 bits (44), Expect = 7.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 5 NAYQAYQHNRVSVESPAKLIEMLYEGIL 32
+A +AY N+++V S +EM+ GIL
Sbjct: 143 SAIEAYATNQIAVPSVPTTVEMM-SGIL 169
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 21.2 bits (43), Expect = 9.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 48 EKKIYYINRVTDIFTELLNILDY 70
+ KIY +N+V + T + N +Y
Sbjct: 58 QNKIYKLNQVKNEITNMPNTFNY 80
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 21.2 bits (43), Expect = 9.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 48 EKKIYYINRVTDIFTELLNILDY 70
+ KIY +N+V + T + N +Y
Sbjct: 63 QNKIYKLNQVKNEITNMPNTFNY 85
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,961
Number of Sequences: 1491
Number of extensions: 5007
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 11
length of query: 126
length of database: 494,079
effective HSP length: 68
effective length of query: 58
effective length of database: 392,691
effective search space: 22776078
effective search space used: 22776078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)