BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645373|ref|NP_207547.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223409.1| putative [Helicobacter pylori J99] 138 2e-35
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 29 0.015
ref|NP_223971.1| putative [Helicobacter pylori J99] 26 0.13
ref|NP_223610.1| putative [Helicobacter pylori J99] 26 0.13
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 25 0.22
ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-B... 25 0.29
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 25 0.29
ref|NP_223135.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_224090.1| putative [Helicobacter pylori J99] 24 0.49
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 0.49
ref|NP_222733.1| putative [Helicobacter pylori J99] 24 0.49
ref|NP_223731.1| putative [Helicobacter pylori J99] 24 0.65
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 24 0.65
ref|NP_222840.1| putative [Helicobacter pylori J99] 24 0.65
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 23 0.84
ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 23 0.84
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 23 1.4
ref|NP_223618.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobact... 23 1.4
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 23 1.4
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_222774.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_222772.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 22 2.5
ref|NP_222782.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 3.2
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 21 4.2
ref|NP_223676.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223405.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223383.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 21 5.5
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 21 5.5
ref|NP_223636.1| DNA transfer protein [Helicobacter pylori ... 21 5.5
ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC C... 21 5.5
ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter ... 20 7.1
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 20 7.1
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 20 7.1
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 20 9.3
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 20 9.3
ref|NP_223659.1| putative [Helicobacter pylori J99] 20 9.3
>ref|NP_223409.1| putative [Helicobacter pylori J99]
Length = 79
Score = 138 bits (348), Expect = 2e-35
Identities = 74/79 (93%), Positives = 77/79 (96%)
Query: 1 MNSPNILLDSFKIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE 60
MNSP++LLDSFKIALVKKDSK AFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE
Sbjct: 1 MNSPDVLLDSFKIALVKKDSKLAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE 60
Query: 61 KEELQLQMHKAKKIQKFLS 79
KEELQ QMHKAK+IQKFLS
Sbjct: 61 KEELQSQMHKAKQIQKFLS 79
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 29.3 bits (64), Expect = 0.015
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 3 SPNILLDSFKIALVKKDSKQAFSLIERLSLEQIKSLDL-DALLSLKEMIAQSIELLEKEK 61
SPN +L + K L+K+D +Q L + L L+ + LDL D LK + ++ + E ++
Sbjct: 105 SPNHVLATIKSRLIKEDKRQKIPL-KPLDLD-LSKLDLKDIYAFLKNLDKENFDSRENQR 162
Query: 62 EELQ 65
E ++
Sbjct: 163 ERIE 166
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 26.2 bits (56), Expect = 0.13
Identities = 14/48 (29%), Positives = 24/48 (49%)
Query: 16 VKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEE 63
+KK + S + QI+ +D DALL + + ++ LEK +E
Sbjct: 65 IKKANSTLTSQRRFFNASQIRLMDTDALLKQSALELEKLQALEKHLKE 112
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 26.2 bits (56), Expect = 0.13
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 36 KSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHK 70
K DLD L+ KE ++I LE+EK L+LQ+ K
Sbjct: 28 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK 62
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.4 bits (54), Expect = 0.22
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 5/48 (10%)
Query: 33 EQIKSLDLDALLSLKEMIAQSIE-----LLEKEKEELQLQMHKAKKIQ 75
E K ++ L++ ++IA E L EKEK+E +L +K K ++
Sbjct: 279 ENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQETELAKYKLKDLE 326
>ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 255
Score = 25.0 bits (53), Expect = 0.29
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Query: 18 KDSKQAFSLIERLSLEQIKSLDLDALL-SLKEMIAQSIELLEK 59
K K+A S++ERL LE +K ++ L ++M+ + LL++
Sbjct: 115 KHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQR 157
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 25.0 bits (53), Expect = 0.29
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 28 ERLSLEQIKSLDLDALLSLKEMIAQSIELLE-KEKEELQLQMHKAKKIQK 76
E+ S+E+I S+ LS+ E I ++ ELLE KE EL + K +IQK
Sbjct: 40 EQSSIEEI-SVASKEYLSVLEGIKENKELLEDKELSELAKEELKILEIQK 88
Score = 22.7 bits (47), Expect = 1.4
Identities = 14/42 (33%), Positives = 24/42 (56%)
Query: 26 LIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQ 67
L E+LS + +L ALLS E+++ +L E KE+ ++
Sbjct: 4 LAEKLSSILKRYDELTALLSSVEVVSDIKKLTELSKEQSSIE 45
Score = 21.9 bits (45), Expect = 2.5
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 SKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQ 65
SK+ S++E +++ K L D LS E+ + +++LE +K EL+
Sbjct: 51 SKEYLSVLE--GIKENKELLEDKELS--ELAKEELKILEIQKSELE 92
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 24.6 bits (52), Expect = 0.38
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 36 KSLDLDALLSLK------EMIAQSIELLEKEKEELQLQMHKAKKI 74
K +D +L+S++ E + S+ LL KE+ E L ++ KK+
Sbjct: 434 KEIDTSSLISVEGNVEGYETFSDSLFLLSKERIEEALHYYQPKKV 478
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 24.3 bits (51), Expect = 0.49
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 45 SLKEMIAQSIELLEKEKEELQLQMHKAKKI 74
SLK+ + Q+I ++ KE + +H KK+
Sbjct: 33 SLKQALEQTISKIKSSKEFFKQLLHNKKKL 62
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 24.3 bits (51), Expect = 0.49
Identities = 13/62 (20%), Positives = 31/62 (49%)
Query: 12 KIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKA 71
KIA +S + ++ EQ+++ + + +L + +++E +E +KE + + K
Sbjct: 78 KIAWYNNESLKIEVYNKQFKEEQLRNSQVKGIFTLGKKTNENLEKIESKKESINKENEKK 137
Query: 72 KK 73
K
Sbjct: 138 IK 139
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 24.3 bits (51), Expect = 0.49
Identities = 14/30 (46%), Positives = 21/30 (69%), Gaps = 5/30 (16%)
Query: 32 LEQIKSL-----DLDALLSLKEMIAQSIEL 56
++QIK+L LD+LLS+K +I Q IE+
Sbjct: 1 MKQIKALALFSGGLDSLLSMKLLIDQGIEV 30
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 23.9 bits (50), Expect = 0.65
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 4/43 (9%)
Query: 31 SLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKK 73
SL+ +D+D +L++ LE EKE +Q +H+ KK
Sbjct: 119 SLKLPSDIDIDDTKALEKFSKS----LESEKESIQNSLHQWKK 157
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 23.9 bits (50), Expect = 0.65
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 4/35 (11%)
Query: 33 EQIKSL----DLDALLSLKEMIAQSIELLEKEKEE 63
E +KSL D AL+ E I Q +E +EKE+E+
Sbjct: 8 ELLKSLQNKCDNIALIIKPEKIKQELERIEKEQED 42
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.9 bits (50), Expect = 0.65
Identities = 10/36 (27%), Positives = 18/36 (49%)
Query: 4 PNILLDSFKIALVKKDSKQAFSLIERLSLEQIKSLD 39
PN++ VKKD K+ + L E++K+ +
Sbjct: 30 PNVMFSESSTGNVKKDRKRVLKSMVDLEKERVKNFN 65
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 23.5 bits (49), Expect = 0.84
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 12/49 (24%)
Query: 32 LEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
L++ K L D+ A+L L E+ EE + + +A+KI+KFLS
Sbjct: 371 LQKYKDLQDIIAILGLDEL-----------SEEDKKTVERARKIEKFLS 408
>ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 23.5 bits (49), Expect = 0.84
Identities = 7/34 (20%), Positives = 23/34 (67%)
Query: 28 ERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEK 61
+++ L+ + S+D+ +++ L +++ +E+L +K
Sbjct: 219 KKMILKDVVSMDIGSVVELDQLVNDPLEILVDDK 252
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/41 (24%), Positives = 23/41 (55%)
Query: 12 KIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQ 52
K + K + ++ +++ E+ K+LD + + L++ IAQ
Sbjct: 614 KDKMPKSEREKIIKELDKKMRERAKNLDFEEAMRLRDEIAQ 654
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 22.7 bits (47), Expect = 1.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQK 76
D A L L L+++K L+ SLK +I EK EE++ K I+K
Sbjct: 37 DKIDAEKLFSALYLKRLKFLNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVKDIEK 94
>ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobacter pylori J99]
Length = 339
Score = 22.7 bits (47), Expect = 1.4
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 25 SLIERLSLEQIK--SLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFL 78
+L+E+LSLE I+ SL + A ++ + LEKE L+ KKI K L
Sbjct: 173 ALLEKLSLELIEYLSLQIQAGVNAVMIFDSWASALEKE-AYLEFSWDYLKKISKEL 227
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/24 (41%), Positives = 18/24 (74%), Gaps = 2/24 (8%)
Query: 57 LEKEKEEL--QLQMHKAKKIQKFL 78
LEKEK+EL +++ K K +++F+
Sbjct: 116 LEKEKKELLNKIEKQKIKHLERFI 139
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.7 bits (47), Expect = 1.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 36 KSLDLDALLSLKEMIAQSI 54
K LD D++ SLK ++A+++
Sbjct: 461 KKLDADSIYSLKNIVAKNL 479
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/45 (28%), Positives = 24/45 (52%)
Query: 31 SLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQ 75
SLE + AL + +AQ+ E + EK EL+ ++ + K ++
Sbjct: 227 SLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLE 271
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 22.3 bits (46), Expect = 1.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 36 KSLDLDALLSLKEMIAQSI 54
K LD D++ SLK ++A ++
Sbjct: 541 KKLDADSIYSLKNIVANNL 559
Score = 21.9 bits (45), Expect = 2.5
Identities = 12/63 (19%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 15 LVKKDSKQAFSL--IERLSLEQIKSLDLDA--------LLSLKEMIAQSIELLEKEKEEL 64
L K ++++AF +++L +IK L ++ +L ++ + A+++E ++K + +
Sbjct: 973 LAKLETEKAFKAEAVKKLDFNEIKKLIDESPRTGSSMPILGMQNLNAEAVEYIQKNHKRI 1032
Query: 65 QLQ 67
++
Sbjct: 1033 AVE 1035
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 55 ELLEKEKEELQLQMHKAKKIQKFL 78
E L KEK ELQ Q+++ K ++ L
Sbjct: 61 ENLTKEKTELQKQVNELKNSKQVL 84
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 21.9 bits (45), Expect = 2.5
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 35 IKSLDLDALLSLKEMIAQSIELLEKEKEELQL 66
+K DL++ L +K++ A + +KE+E ++
Sbjct: 355 LKDTDLESSLEVKKIKAMVNSMTKKERENPEI 386
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 21.9 bits (45), Expect = 2.5
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 8/48 (16%)
Query: 33 EQIKSLDLDALLSLKEMIAQSIELLEKEKE----ELQLQMHKAKKIQK 76
+++KS L+ +L IA +E LE+E + ++ Q+ +AK+++K
Sbjct: 34 QKLKSEALENMLK----IAHDLENLEQETQYEMRKINEQLEEAKRLEK 77
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.6 bits (44), Expect = 3.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 26 LIERLS--LEQIKSLDLDALLSLKEMIAQSIE-LLEKEKEELQLQMHKAKKIQKFL 78
LI RL LE+++ L L + + + + +LEK +E L+ + K KIQ+ L
Sbjct: 811 LIARLKKQLEKLEKEKLKLNLHNENFVKNAPKSVLEKARESLKTLLEKEGKIQQEL 866
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 47 KEMIAQSIELLEKEKEELQ 65
KE + LEKEK+EL+
Sbjct: 101 KEFVRDEKRYLEKEKKELE 119
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 21.2 bits (43), Expect = 4.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 LSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKK 73
LSL Q LDL S+ +M + ++LE+EK L + + K
Sbjct: 399 LSLAQF--LDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 440
>ref|NP_223676.1| putative [Helicobacter pylori J99]
Length = 218
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 35 IKSLDLDALLSLKEMIAQSIELLEKEKEELQLQ 67
+K ++++ L+ E + + I+ L+KE+E +L+
Sbjct: 185 LKDIEVNLGLATHEEVDEYIDNLDKEEEAEKLE 217
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 21.2 bits (43), Expect = 4.2
Identities = 14/47 (29%), Positives = 26/47 (54%)
Query: 28 ERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKI 74
+RLSL + + +L+ALL +I Q+ E E+ + Q + K++
Sbjct: 214 QRLSLLEKERQNLNALLKRLNIIKQNRENEERVSLKKSSQALEVKQV 260
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 50 IAQSIELLEKEKEEL 64
I QS + L+KEKE L
Sbjct: 202 IIQSFKFLDKEKERL 216
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 20.8 bits (42), Expect = 5.5
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 12 KIAL---VKKDSKQAFSLIERLSLE-QIKSLDLDALLSLKEMIAQSIELL 57
KIAL KK+ K L E S IK +LDAL LK+ ++ I+++
Sbjct: 66 KIALNQAFKKNHKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMI 115
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 20.8 bits (42), Expect = 5.5
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 10 SFKIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQ 67
S K+ L K + I+ +IK + + L L+E+ + I K+K Q++
Sbjct: 747 SNKVKLSFKSVAKVLENIDENKFNEIKKNEQEGLKRLEELFLEIIYQNIKDKISYQMR 804
>ref|NP_223636.1| DNA transfer protein [Helicobacter pylori J99]
Length = 140
Score = 20.8 bits (42), Expect = 5.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 32 LEQIKSLDLDALLSLKEMIAQSIELLEKEKEEL 64
+ Q+K L +D SL ++Q I K+ +EL
Sbjct: 30 ISQVKELGIDKAKSLIGNLSQVIIYPTKDTDEL 62
>ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN [Helicobacter
pylori J99]
Length = 307
Score = 20.8 bits (42), Expect = 5.5
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 30 LSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEEL 64
LSL++IK L A + + A S+E EK ++++
Sbjct: 14 LSLDEIKLLLNKASVYANDFNAVSLETREKMQDKI 48
>ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter pylori J99]
Length = 290
Score = 20.4 bits (41), Expect = 7.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 47 KEMIAQSIELLEKEKEELQLQMHKAKKIQKFL 78
K ++ QS+E ++ E H+A+ ++K L
Sbjct: 256 KRLLDQSVESYHEKSECYLASPHEAQILEKHL 287
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 44 LSLKEMIAQSIELLEKEKEEL 64
++LKE + ++ LEK +EL
Sbjct: 128 ITLKEDFKEGLDFLEKHIQEL 148
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 9 DSFKIALVKKDSKQAFSL 26
D+F +AL KK K+ + L
Sbjct: 167 DAFAVALTKKRIKERYRL 184
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 20.0 bits (40), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 16 VKKDSKQAFSLIERLSLEQIKSLD 39
+++ SKQ +IE SL + SLD
Sbjct: 478 IEQGSKQLLEVIEIRSLPFLGSLD 501
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 5 NILLDSFKIALVKKDSKQA 23
N LLD FK++ + ++K A
Sbjct: 139 NALLDDFKLSHLSLNAKDA 157
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 20.0 bits (40), Expect = 9.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 46 LKEMIAQSIELLEKEKEELQLQMHKA 71
LKE+ ++L + EKEE L+ K+
Sbjct: 231 LKELDNIKLQLQDLEKEEKALEQIKS 256
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.131 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,543
Number of Sequences: 1491
Number of extensions: 2921
Number of successful extensions: 46
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 79
length of database: 494,079
effective HSP length: 55
effective length of query: 24
effective length of database: 412,074
effective search space: 9889776
effective search space used: 9889776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)