BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645375|ref|NP_207549.1| hypothetical protein
[Helicobacter pylori 26695]
(48 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223411.1| putative [Helicobacter pylori J99] 105 2e-25
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 25 0.25
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 23 1.2
ref|NP_223399.1| putative [Helicobacter pylori J99] 22 2.1
ref|NP_223773.1| putative [Helicobacter pylori J99] 22 2.7
ref|NP_224054.1| putative [Helicobacter pylori J99] 21 4.7
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 21 4.7
ref|NP_223038.1| putative [Helicobacter pylori J99] 21 4.7
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 6.1
ref|NP_223651.1| putative [Helicobacter pylori J99] 21 6.1
ref|NP_223642.1| putative [Helicobacter pylori J99] 21 6.1
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 20 7.9
ref|NP_223790.1| putative [Helicobacter pylori J99] 20 7.9
ref|NP_223588.1| putative outer membrane protein [Helicobac... 20 7.9
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 20 7.9
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 20 7.9
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 20 7.9
ref|NP_222870.1| putative [Helicobacter pylori J99] 20 7.9
>ref|NP_223411.1| putative [Helicobacter pylori J99]
Length = 48
Score = 105 bits (261), Expect = 2e-25
Identities = 47/48 (97%), Positives = 47/48 (97%)
Query: 1 MKDYEDELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSDYEEE 48
MKDYEDELEDFEEEELEGFEEEDEEY DYKNVYDDDDYEDYNSDYEEE
Sbjct: 1 MKDYEDELEDFEEEELEGFEEEDEEYNDYKNVYDDDDYEDYNSDYEEE 48
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 25.4 bits (54), Expect = 0.25
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 7 ELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNS 43
+L + E + FE +D G+++N + + YE ++S
Sbjct: 222 DLNNIENMKDYAFENKDYSKGNFRNYLEKEIYEQHSS 258
Score = 20.8 bits (42), Expect = 6.1
Identities = 8/24 (33%), Positives = 12/24 (49%)
Query: 24 EEYGDYKNVYDDDDYEDYNSDYEE 47
E + D N+ + DY N DY +
Sbjct: 218 ENFKDLNNIENMKDYAFENKDYSK 241
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 23.1 bits (48), Expect = 1.2
Identities = 14/42 (33%), Positives = 19/42 (44%)
Query: 3 DYEDELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSD 44
D + EL + L+ F DEE Y N+ + Y DY D
Sbjct: 139 DSQIELYGTKLPPLKLFVMTDEEVNFYANLKTIEQYNDYVRD 180
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 22.3 bits (46), Expect = 2.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 KDYEDELEDFEEEELEGFEEEDEE 25
KDY D ++ ++E + F+ DE+
Sbjct: 104 KDYHDTMQSIKKEMEDSFKTLDEK 127
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 21.9 bits (45), Expect = 2.7
Identities = 11/46 (23%), Positives = 22/46 (46%)
Query: 3 DYEDELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSDYEEE 48
D+ + E+ +EE E E+ D++ D + +D + +EE
Sbjct: 74 DFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEE 119
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 21.2 bits (43), Expect = 4.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 4 YEDELEDFEEEELE 17
Y + +E+FEEE LE
Sbjct: 159 YGEVIENFEEESLE 172
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 21.2 bits (43), Expect = 4.7
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 4 YEDELED---FEEEELEGFEEEDEEYGDYKNVYD 34
Y+DE ++ F+ E + +E+EE +N+ D
Sbjct: 300 YDDETDEILLFDLHEQDNLNKEEEEKEARQNIND 333
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 21.2 bits (43), Expect = 4.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 7 ELEDFEEEELEGFEEEDEE 25
+L DF EEEL+ E +E+
Sbjct: 59 QLSDFNEEELKIMFEAEEK 77
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 20.8 bits (42), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 8 LEDFEEEELEGFEEEDEEYGDYKN 31
LEDFE+E++ E Y Y+N
Sbjct: 1106 LEDFEKEKIVYPETSQGAYFIYEN 1129
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 20.8 bits (42), Expect = 6.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 2 KDYEDELEDFEEEELEGFEEEDEEYG 27
KDY+ E E F ++ + F+E E G
Sbjct: 313 KDYDKEKEPFSKKLQQCFKEILESKG 338
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 20.8 bits (42), Expect = 6.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 3 DYEDELEDFEEEELEGFEEEDEE 25
D ++ ++ +EEELE E+E +E
Sbjct: 155 DKKETSKEEKEEELESKEKEPKE 177
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 20.4 bits (41), Expect = 7.9
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 17 EGFEEEDEEYGDYKNVYDDDDY 38
+G++E +Y+ +++DD Y
Sbjct: 161 KGYDEAKRIACEYQEIFEDDFY 182
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 20.4 bits (41), Expect = 7.9
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 5 EDELEDFEEEELEGFEEEDEEYG 27
++ELE+++E+ + +EE+ + G
Sbjct: 101 KEELEEYKEKNPKEYEEKVNKSG 123
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 20.4 bits (41), Expect = 7.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 11 FEEEELEGFEEEDEEYGDYKNVYDDDDY 38
FE LEG + +++ + KN Y +Y
Sbjct: 28 FETGLLEGTQTQEKRHTTTKNTYATYNY 55
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 20.4 bits (41), Expect = 7.9
Identities = 6/22 (27%), Positives = 15/22 (67%)
Query: 13 EEELEGFEEEDEEYGDYKNVYD 34
E+ L+G+ + ++EY Y+ + +
Sbjct: 598 EDYLKGYADNNKEYEGYEGLIE 619
Score = 20.4 bits (41), Expect = 7.9
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 7 ELEDFEEEELEGFEEEDEEYGDYKNVYDDD 36
+ +D++ + L+ ++E E G K +DD
Sbjct: 670 DFQDYQSKYLDFYDEMRPEKGRDKEEINDD 699
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 20.4 bits (41), Expect = 7.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 11 FEEEELEGFEEEDEEYGDYKNVYDDDDY 38
FE LEG + +++ + KN Y +Y
Sbjct: 28 FETGLLEGTQTQEKRHTTTKNTYATYNY 55
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 20.4 bits (41), Expect = 7.9
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 9 EDFEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSDYEEE 48
+ +EE + EE+D+E +++ D +D S+ ++
Sbjct: 107 KSLDEETQKLNEEDDQENNEHQEETQTDLIDDETSEKTQQ 146
>ref|NP_222870.1| putative [Helicobacter pylori J99]
Length = 240
Score = 20.4 bits (41), Expect = 7.9
Identities = 8/30 (26%), Positives = 16/30 (52%)
Query: 3 DYEDELEDFEEEELEGFEEEDEEYGDYKNV 32
+ DE + E+ L+ E++D+ Y N+
Sbjct: 210 ELNDEQMELTEKLLDRIEDDDDVVALYTNI 239
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.297 0.134 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,445
Number of Sequences: 1491
Number of extensions: 3390
Number of successful extensions: 30
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 48
length of database: 494,079
effective HSP length: 24
effective length of query: 24
effective length of database: 458,295
effective search space: 10999080
effective search space used: 10999080
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.5 bits)
S2: 41 (20.4 bits)