BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645381|ref|NP_207555.1| hypothetical protein
[Helicobacter pylori 26695]
(185 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223417.1| putative [Helicobacter pylori J99] 334 1e-93
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 29 0.089
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 28 0.15
ref|NP_223709.1| iron-dependent superoxide dismutase [Helic... 28 0.20
ref|NP_223248.1| putative [Helicobacter pylori J99] 27 0.44
ref|NP_223296.1| putative [Helicobacter pylori J99] 26 0.75
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 26 0.75
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 25 1.3
ref|NP_224188.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223651.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 24 2.2
ref|NP_223019.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_223954.1| 50S RIBOSOMAL PROTEIN L2 [Helicobacter pyl... 24 2.9
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 24 2.9
ref|NP_224181.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicoba... 23 3.7
ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 23 4.9
ref|NP_223584.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 23 4.9
ref|NP_223622.1| putative cation efflux system protein [Hel... 23 6.4
ref|NP_223322.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223025.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223055.1| putative [Helicobacter pylori J99] 22 8.3
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 334 bits (856), Expect = 1e-93
Identities = 168/185 (90%), Positives = 173/185 (92%)
Query: 1 MRIKAYFLRFIALVLIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITG 60
MRIKAYFLRFIALV IVLLGFSACKNSQKSQDSQNNT QQDSPKTYTAMDLNNQEYTI G
Sbjct: 1 MRIKAYFLRFIALVFIVLLGFSACKNSQKSQDSQNNTTQQDSPKTYTAMDLNNQEYTIMG 60
Query: 61 DLDSLNISPDSNTPTLLVLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIK 120
DLDSLNISPD NTPTLL+LSALDNSLKDYAP+FN+LKKTFKDRLRVLILLN+PYSSDAIK
Sbjct: 61 DLDSLNISPDPNTPTLLILSALDNSLKDYAPTFNVLKKTFKDRLRVLILLNQPYSSDAIK 120
Query: 121 DFSAHFQADLMILNPKDTALFDHLKYDALNHSFNMLLYHKHQLIKMYQGIVPIEMLQFDI 180
F A Q DLMILNPKDTALFDHL +DALNHSFNMLLY KHQLIKMYQGIVP EMLQFDI
Sbjct: 121 GFIAPSQTDLMILNPKDTALFDHLNHDALNHSFNMLLYDKHQLIKMYQGIVPAEMLQFDI 180
Query: 181 SNLKD 185
SNLKD
Sbjct: 181 SNLKD 185
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 28.9 bits (63), Expect = 0.089
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 55 EYTITGDL--DSLNISPDSNTPTLLVLSALD-NSLKDYAPSFNILKKTFKDRLRVL 107
EY G L D L ++ D TP + VL ++ K AP F L++ FK+ L VL
Sbjct: 488 EYFEKGGLEEDLLTLARDIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVL 543
Score = 25.4 bits (54), Expect = 0.98
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 20/123 (16%)
Query: 47 TAMDLNNQEYTITGDLDSLNISPDSNTPTLLVLSALDNS--------LKDYAPSFNILKK 98
T DL N + + N+ ++TP L ALDN+ L+ P L+K
Sbjct: 286 TLRDLENSPFIVE------NVPILNSTPILDNTPALDNAPKKSRMIVLESAEPLSMFLEK 339
Query: 99 TFKDRLRVL--ILLNKPYSSDAIKDFSAHFQADLMILNPKDTALFDHLKYDALNHSFNML 156
RV ++L+K A+ A D P + ALF + L ++F+ +
Sbjct: 340 LENPNARVFMRLVLDKDKKILAL----AFLLQDQGYFLPLEEALFSPFSLEFLQNAFSQM 395
Query: 157 LYH 159
L H
Sbjct: 396 LQH 398
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 28.1 bits (61), Expect = 0.15
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 55 EYTITGDLDSLNISPDSNTPTLLVLSALDNSLKDY 89
E+ + + S++++PDS PT ++ L+ LKD+
Sbjct: 773 EFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDH 807
>ref|NP_223709.1| iron-dependent superoxide dismutase [Helicobacter pylori J99]
Length = 213
Score = 27.7 bits (60), Expect = 0.20
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 94 NILKKTFKDRLRVLILLNKPYS---SDAIKDFSAHFQADLMILNPKDTALFDHLKYDALN 150
N++K T ++ + +L K ++A + ++ F D L+PK TAL D LK +AL
Sbjct: 40 NLIKGTDFEKSSLFAILTKSSGGVFNNAAQIYNHDFYWDC--LSPKATALSDELK-EALE 96
Query: 151 HSFNMLLYHKHQLIK 165
F L K IK
Sbjct: 97 KDFGSLEKFKEDFIK 111
>ref|NP_223248.1| putative [Helicobacter pylori J99]
Length = 293
Score = 26.6 bits (57), Expect = 0.44
Identities = 22/83 (26%), Positives = 35/83 (41%), Gaps = 11/83 (13%)
Query: 67 ISPDSNTPTLLVLSALDNSLKDYAPSFNILKKTFK-DRLRVLILLNKPYSSDAIKDFSA- 124
+ PDSN P + A+ +L P FN K + + +V++L N S DF
Sbjct: 40 VQPDSNAPATPPIKAVQTTLTFETP-FNKTPKIMEVEGQKVIVLKNAQLDSKKTMDFKEA 98
Query: 125 --------HFQADLMILNPKDTA 139
+Q D+ +L+ K A
Sbjct: 99 SLNALEMFSYQNDIYLLSKKAKA 121
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 25.8 bits (55), Expect = 0.75
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 89 YAPSFNILKKTFKDRLRVLILLNKPYSSDAIKDFSAHFQADLMILNP-KDTALFDHL 144
Y P N+L +D + +++ +S +A+ + A F+ ++ P K+ L +HL
Sbjct: 227 YDPILNLLCHILQDEGIEFVFMHESHSCEALLHYEALFKTPKRLITPTKNFVLENHL 283
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 25.8 bits (55), Expect = 0.75
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 41 DSPKTYTAMDLNNQEYTITGDLDSLNISPDSNTPTLLVLSALDN 84
D K YT +D N + + GD S + P S LV+S DN
Sbjct: 2711 DYLKLYTLIDFNGKRMQLNGDSLSYDNQPVSIKDGGLVVSFKDN 2754
Score = 22.3 bits (46), Expect = 8.3
Identities = 25/93 (26%), Positives = 36/93 (37%), Gaps = 13/93 (13%)
Query: 25 KNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLN--ISPDSNTPTLLVLSA- 81
KN+Q ++D+ N ++ TY Y + G L SPDS + A
Sbjct: 416 KNTQATKDNSKNATSNNNTHTYYV------TYNLGGTLYHFRQIFSPDSIVLQSVYYGAN 469
Query: 82 ---LDNSLKDYAPSFNILKKTFKDRLRVLILLN 111
NS+ + FN LK DR + LN
Sbjct: 470 NLYYTNSVNIHDNVFN-LKNINDDRADTIFYLN 501
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 25.0 bits (53), Expect = 1.3
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 150 NHSFNMLLYHKHQLIKMYQ 168
NH F+ LLY+ HQ I Y+
Sbjct: 205 NHHFDALLYYTHQNIFYYR 223
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 24.6 bits (52), Expect = 1.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 86 LKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAI 119
+ DYA +I+K T KD R+ KP SSD +
Sbjct: 74 ISDYAFKSDIVKATLKDPERI-----KPMSSDHV 102
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 24.3 bits (51), Expect = 2.2
Identities = 22/79 (27%), Positives = 35/79 (43%), Gaps = 2/79 (2%)
Query: 94 NILKKTFKDRLRVLILLNKPYSSDAIKDFSAHFQADLMILNPKDTALFDHL--KYDALNH 151
N+LK F + +L +L K Y+ + + S ++ KDTAL+ L YD
Sbjct: 261 NVLKDKFSYDIDLLQVLVKGYAKEIREFLSYKPIKEIKDFKDKDTALYISLGKDYDKEKE 320
Query: 152 SFNMLLYHKHQLIKMYQGI 170
F+ L + I +GI
Sbjct: 321 PFSKKLQQCFKEILESKGI 339
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 24.3 bits (51), Expect = 2.2
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 83 DNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIKDFSAHF----------QADLMI 132
D LK+Y+ +L+K ++ ++ +PY+S +K+ A A L I
Sbjct: 221 DPFLKNYSKDAIVLEKKDIYNIQYILKDGEPYTSFELKNLGAFLVWGLGEHNATNASLAI 280
Query: 133 LNPKDTALFDHLKYDALN 150
L+ D + ++ + LN
Sbjct: 281 LSALDELNLEEIRNNLLN 298
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 24.3 bits (51), Expect = 2.2
Identities = 21/82 (25%), Positives = 39/82 (46%)
Query: 78 VLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIKDFSAHFQADLMILNPKD 137
+LS L +K Y + + L TF + +L+LL +S + + F + LM L
Sbjct: 4 ILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLLIIS 63
Query: 138 TALFDHLKYDALNHSFNMLLYH 159
+A+F + + S N+ L++
Sbjct: 64 SAIFGLTQAITSSRSHNIFLFY 85
>ref|NP_223954.1| 50S RIBOSOMAL PROTEIN L2 [Helicobacter pylori J99]
Length = 276
Score = 23.9 bits (50), Expect = 2.9
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 15 LIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPDSNTP 74
L+ L +A +N+ S++ ++ + K Y +D +Y I G + ++ P N
Sbjct: 33 LLTKLKATAGRNNNGRITSRHK--ERGAKKLYRIIDFKRNKYNIEGKVAAIEYDPYRNAR 90
Query: 75 TLLVL 79
LV+
Sbjct: 91 IALVV 95
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 23.9 bits (50), Expect = 2.9
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 72 NTPTLLVLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIKDFS 123
N P + DN+ +++ + FKDR+ ++ L Y +K+++
Sbjct: 280 NEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYT 331
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 23.5 bits (49), Expect = 3.7
Identities = 38/147 (25%), Positives = 61/147 (40%), Gaps = 19/147 (12%)
Query: 18 LLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPDSNTPTLL 77
+L + + S Q NTP ++SPK LN + ++I D N L
Sbjct: 220 ILNANTIRKSVYIQIKDENTPLEESPKRL----LNLFGWGFIKFFIMVSILID-NRVKYL 274
Query: 78 VLSALDNSLKDYAPSFNILKKTFK--DRLRVLILL---NKPYSSDAIKDFSAHFQADLMI 132
+ +++ L + LK FK +L++ I NK + +AI S +
Sbjct: 275 FIDEIESGL-HHTKMQEFLKALFKLAQKLQIQIFATTHNKEFLLNAINTISDNETGVF-- 331
Query: 133 LNPKDTALFDHLKYDA---LNHSFNML 156
KD ALF+ K A + HS++ML
Sbjct: 332 ---KDIALFELEKESASGFIRHSYSML 355
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.5 bits (49), Expect = 3.7
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 18 LLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPD----SNT 73
+L K + K Q S+N QD+ ++ E +L SLNI D +
Sbjct: 46 ILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSN 105
Query: 74 PTLLVLSALDNSLKDYAPSFNILKK 98
+ L N +K + +LKK
Sbjct: 106 QANREIENLQNEIKHKSEKQEVLKK 130
>ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
Length = 493
Score = 23.5 bits (49), Expect = 3.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 58 ITGDLDSLNISPDSNTPTLLVLSALDNSLKDYAPSFNILKKT 99
ITG+L+S I+ TP ++ LKD A NIL+ T
Sbjct: 442 ITGELNSKTIASKLKTPQKIL-------LKDKAQLENILQAT 476
>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 378
Score = 23.1 bits (48), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 134 NPKDTALFDHLKYDALNHSFNMLLYHK 160
NP T L LK+ + NH + +L++ K
Sbjct: 267 NPYFTPLHPLLKHQSSNHLYPILMHQK 293
>ref|NP_223584.1| putative [Helicobacter pylori J99]
Length = 219
Score = 23.1 bits (48), Expect = 4.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 4 KAYFLRFIALVLIVLLGFSACKN 26
K + L F+ L++ VL FSAC++
Sbjct: 3 KKHRLAFLGLIVGVLFFFSACQH 25
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 23.1 bits (48), Expect = 4.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 89 YAPSFNILKKTFKDRLRVLILLNKP 113
YAP K KD+L V I+ KP
Sbjct: 95 YAPKMTYEVKILKDKLYVSIMEKKP 119
>ref|NP_223622.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 359
Score = 22.7 bits (47), Expect = 6.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 18 LLGFSACKNSQKSQD--SQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPDSNTPT 75
+L F++ KS D +Q P S + N+E G + S+++ D + T
Sbjct: 199 ILAFTSYVRISKSDDLIAQIKLPVGVSKSIKRDSPVYNEEGEKIGKIQSVSVVLDKGSNT 258
Query: 76 LLVLSALD 83
+L + LD
Sbjct: 259 ILATALLD 266
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 22.7 bits (47), Expect = 6.4
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 29 KSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPDSNTPTLL 77
++Q QNN P+ + T N+E + + +S+ +P++ T L
Sbjct: 105 QNQGVQNNAPKPEEKDTTPQATEKNKETSPSSQFNSIFGNPNNATNNTL 153
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 22.7 bits (47), Expect = 6.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 10 FIALVLIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISP 69
F+ ++ +L N+ + + SQN P Q+ ++ N E GDL++L
Sbjct: 101 FLPTEMLKVLQKKLGSNASELEPSQNLDPTQE------ILETNWDELENLGDLEALAKEE 154
Query: 70 DSNTPTLL 77
+N LL
Sbjct: 155 PNNEEQLL 162
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 22.3 bits (46), Expect = 8.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 79 LSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIKDFSAHFQADLMI 132
L +NS Y S + L F + I LN+ D D+ H + MI
Sbjct: 83 LLLFENSFLGYLESTSFLFDLFDELSSACIKLNELSFKDIYLDYEKHLEVLEMI 136
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,263
Number of Sequences: 1491
Number of extensions: 9492
Number of successful extensions: 53
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 26
length of query: 185
length of database: 494,079
effective HSP length: 72
effective length of query: 113
effective length of database: 386,727
effective search space: 43700151
effective search space used: 43700151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)