BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645384|ref|NP_207558.1| hypothetical protein
[Helicobacter pylori 26695]
(102 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223421.1| putative [Helicobacter pylori J99] 137 8e-35
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 0.73
ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helico... 24 0.73
ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [H... 23 1.6
ref|NP_223692.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223495.1| putative Outer membrane protein [Helicobac... 22 2.8
ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pyl... 22 3.6
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 22 3.6
ref|NP_223448.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNI... 22 3.6
ref|NP_222960.1| ADENYLOSUCCINATE SYNTHETASE [Helicobacter ... 22 4.8
ref|NP_223586.1| putative [Helicobacter pylori J99] 21 8.1
ref|NP_223582.1| GERANYLTRANSTRANSFERASE [Helicobacter pylo... 21 8.1
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 21 8.1
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 21 8.1
ref|NP_223070.1| putative [Helicobacter pylori J99] 21 8.1
>ref|NP_223421.1| putative [Helicobacter pylori J99]
Length = 286
Score = 137 bits (344), Expect = 8e-35
Identities = 70/97 (72%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MEEQKDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSL 60
M++ +D+ I+T V++SLE GGSF+ DR KF QAARTHG+EDSVIEEIIDIGQTLSL
Sbjct: 1 MDKNRDV--HAIMTNVIKSLERGGSFSSSDRAKFVQAARTHGIEDSVIEEIIDIGQTLSL 58
Query: 61 IYRHEYLIDASDLSREQKKTAHAELQKSINENLEALR 97
IYRHE LIDASDL REQKK HAELQKSI+ENLE L+
Sbjct: 59 IYRHEDLIDASDLPREQKKAVHAELQKSIDENLEVLK 95
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 24.3 bits (51), Expect = 0.73
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 9 QSVILTKVLESLENGGSFNQRDREKF 34
QS+I + LE ++ S N+ D E+F
Sbjct: 240 QSIISPRALEEIQELASLNELDDERF 265
>ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helicobacter pylori J99]
Length = 255
Score = 24.3 bits (51), Expect = 0.73
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 GVEDSVIEEIIDIGQTLSLIYRHEYLIDASD 72
G+E EE L LI ++++IDA+D
Sbjct: 98 GIEVETFEERFKAHNALPLIEPYDFIIDATD 128
>ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 23.1 bits (48), Expect = 1.6
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 13 LTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSLIYRHEYLIDASD 72
+ +V+ SL ++ + A+A + E S I + D+G I+ E L +
Sbjct: 74 MDEVMHSLYLQTNYEHLHKHDSAKAVQKPLKESSNISKHYDLGNDFYSIWLDETLSYSCA 133
Query: 73 LSREQKKTAHAELQKSINENLEAL 96
++ T HA + ++ L+ L
Sbjct: 134 YFKKDDDTLHAAQLQKLDHTLKKL 157
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 22.7 bits (47), Expect = 2.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 48 IEEIIDIGQTLSLIYRHEYLIDAS 71
I E+++IG+ S I ++ LIDAS
Sbjct: 57 ILELVNIGKIKSKISHNKLLIDAS 80
>ref|NP_223495.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 587
Score = 22.3 bits (46), Expect = 2.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 52 IDIGQTLSLIYRHEYLID 69
+ + QTLSL Y H++ D
Sbjct: 413 VSLPQTLSLAYAHQFFKD 430
>ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pylori J99]
Length = 264
Score = 21.9 bits (45), Expect = 3.6
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 60 LIYRHEYLIDASDLSREQKKTAHAELQKSINENLE 94
+++ E + +S E+K+ AE+QK I + E
Sbjct: 230 IVHADENSEEIEFVSNEEKEEMLAEIQKEITQGAE 264
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 21.9 bits (45), Expect = 3.6
Identities = 8/13 (61%), Positives = 12/13 (91%)
Query: 89 INENLEALRNIIN 101
+N NL++LR+IIN
Sbjct: 142 LNHNLDSLRDIIN 154
>ref|NP_223448.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNIT [Helicobacter pylori
J99]
Length = 195
Score = 21.9 bits (45), Expect = 3.6
Identities = 12/46 (26%), Positives = 23/46 (49%)
Query: 5 KDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEE 50
K + S++ +SLE RD A+ A+ +G+ D V+++
Sbjct: 147 KGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 192
>ref|NP_222960.1| ADENYLOSUCCINATE SYNTHETASE [Helicobacter pylori J99]
Length = 411
Score = 21.6 bits (44), Expect = 4.8
Identities = 11/40 (27%), Positives = 16/40 (39%)
Query: 5 KDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVE 44
K + + + +TK + G F D RT GVE
Sbjct: 248 KAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGVE 287
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 20.8 bits (42), Expect = 8.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 86 QKSINENLEALRNIIN 101
Q+S NL+AL+NI+N
Sbjct: 154 QESKRINLKALQNILN 169
>ref|NP_223582.1| GERANYLTRANSTRANSFERASE [Helicobacter pylori J99]
Length = 303
Score = 20.8 bits (42), Expect = 8.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 67 LIDASDLSREQKKTAHAELQKSINENLEALR 97
+ID + +E KT H + K+ NL L+
Sbjct: 230 IIDVTQDEKESGKTTHLDSAKNSFVNLLGLK 260
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.8 bits (42), Expect = 8.1
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 9 QSVILTKVLESLENGGS 25
QSV+L L L NGG+
Sbjct: 1740 QSVLLNSALNLLGNGGN 1756
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 20.8 bits (42), Expect = 8.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 23 GGSFNQRDREKFAQAARTHGVEDS 46
G +NQ +E F Q H DS
Sbjct: 213 GKKYNQNQKENFKQQFNLHQSLDS 236
>ref|NP_223070.1| putative [Helicobacter pylori J99]
Length = 272
Score = 20.8 bits (42), Expect = 8.1
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 18 ESLENGGSFNQR 29
ESLENG F +R
Sbjct: 89 ESLENGAKFKKR 100
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.130 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,284
Number of Sequences: 1491
Number of extensions: 3297
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 102
length of database: 494,079
effective HSP length: 65
effective length of query: 37
effective length of database: 397,164
effective search space: 14695068
effective search space used: 14695068
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 42 (20.8 bits)