BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645385|ref|NP_207559.1| hypothetical protein
[Helicobacter pylori 26695]
(274 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223422.1| putative [Helicobacter pylori J99] 184 2e-48
ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERA... 26 1.3
ref|NP_222975.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 25 2.9
ref|NP_223319.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 24 3.8
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 24 4.9
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Heli... 23 6.4
ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter p... 23 6.4
ref|NP_222748.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylo... 23 8.4
ref|NP_223058.1| putative hemolysin [Helicobacter pylori J99] 23 8.4
>ref|NP_223422.1| putative [Helicobacter pylori J99]
Length = 182
Score = 184 bits (467), Expect = 2e-48
Identities = 96/157 (61%), Positives = 116/157 (73%)
Query: 112 SQKIDDNELSCRLLHTGTKILGTKAMAVVGQTFIPIPGVGAIIGNFVGALLSKTLCENLR 171
S KID + +L T L + AM +GQ IPIPGVG +IG FVG ++SKT +
Sbjct: 10 SGKIDRVDCLEKLGKENTTFLSSIAMGSIGQLAIPIPGVGVLIGGFVGGVMSKTFYDVSL 69
Query: 172 DVLKEAKLARQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLERAL 231
+ KEAKLARQRRIEIEKECRESIR LE+Y+NQF EVFERYFHG +KFFNE+F+ LERAL
Sbjct: 70 TIFKEAKLARQRRIEIEKECRESIRQLEMYQNQFNEVFERYFHGTIKFFNESFDELERAL 129
Query: 232 YAGDADLAIGVNNEIQERLGQKPLFNNTQEFLELMNN 268
AGDADLAI VNN+IQE +GQ+ LF+N QE E + +
Sbjct: 130 CAGDADLAIAVNNKIQEGMGQELLFDNKQECWEFITS 166
>ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE [Helicobacter pylori
J99]
Length = 273
Score = 25.8 bits (55), Expect = 1.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 152 AIIGNFVGALLSKTLCENLRDVLKEAKLARQRRIEIEKECRESIRLLEIYRNQFKEVFER 211
A+IG ++ L ++ D+L+E K + I+I + I QFK +R
Sbjct: 202 AVIGRYI-------LTPDIFDILRETKPGKNNEIQITDALLTQAKRKRIIAYQFKG--KR 252
Query: 212 YFHGNVKFFNENFN 225
Y G+V+ + E N
Sbjct: 253 YDCGSVEGYIEASN 266
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 25.0 bits (53), Expect = 2.2
Identities = 26/90 (28%), Positives = 42/90 (45%), Gaps = 15/90 (16%)
Query: 68 VAFLKDIVSNSPNETIQSFDGDLEVAMHLEKIGIECYKIFI-------DYGSQK----ID 116
V DI+ PNE+ + F+ +EV LEK+ + FI + G+ K ++
Sbjct: 292 VGISTDIIVGFPNESDKDFEDTMEV---LEKVRFDTLYSFIYSPRPFTEAGAWKERVPLE 348
Query: 117 DNELSC-RLLHTGTKILGTKAMAVVGQTFI 145
+ L RL + +IL KA VG+T +
Sbjct: 349 ISSLRLERLQNRHKEILEEKAKLEVGKTHV 378
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 24.6 bits (52), Expect = 2.9
Identities = 17/71 (23%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
Query: 17 GVDITESKMLTKFASSL--LMNLYEYIGNGKDPKEASDHAMRDAKDVVLSCGRVAFLKDI 74
G I E+ + K L L YE + + + ++++A ++ L + +LK
Sbjct: 30 GYQIGEAVQMVKNTGELKNLNEKYEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSF 89
Query: 75 VSNSPNETIQS 85
+N+ N T QS
Sbjct: 90 TNNNYNSTTQS 100
>ref|NP_223319.1| putative [Helicobacter pylori J99]
Length = 353
Score = 24.3 bits (51), Expect = 3.8
Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 11/43 (25%)
Query: 147 IPGVGAIIGNFVGALLSKTLCENLRDVLKEAKLARQRRIEIEK 189
IPG GA I L + +RDV+ KL+ R IE+ +
Sbjct: 157 IPGAGAEI-----------LSDRVRDVIAPKKLSSDRWIEVHR 188
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 24.3 bits (51), Expect = 3.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 164 KTLCENLRDV--LKEAKLARQRRIEIEKECRESIRLLEIYRNQFKEVFERY 212
K + E L+++ LKE K+ + + E EKE + I L++ K+ ER+
Sbjct: 436 KRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMEGLKKEAERF 486
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 23.9 bits (50), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Query: 207 EVFERYFHGNVKFFNENFNNLERALYAGDADLAIGVNNEIQE 248
EVF RYF G + N+N + L G +G +EI+E
Sbjct: 18 EVFNRYFPGCLSIENDN----KLTLDTGKLKALLGDFSEIKE 55
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.5 bits (49), Expect = 6.4
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 175 KEAKLARQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLERALYAG 234
+++ LARQ+ E++ E +++ + + R H + +N+ FNN Y G
Sbjct: 1279 EQSNLARQKAEELK----------EAFKDWIYKDYSRRTHLE-QIYNDTFNNSVLKTYDG 1327
Query: 235 DADLAIGVNNEIQERLGQK-PLFNNTQE 261
G N I R QK +F Q+
Sbjct: 1328 SQLELEGFNYHISLRPHQKNAIFRTIQD 1355
>ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 217
Score = 23.5 bits (49), Expect = 6.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 84 QSFDGDLEVAMHLEKIGIECYKIFIDYGSQKI--DDNELSCRLLHTGTKILGTKAMAV 139
Q D L+ + ++++ +EC K+ YG+ I D+ L+ L G + G + MA+
Sbjct: 48 QKGDLALQDPVEIKRLALECQKLCKKYGTPFIINDEVRLALELKADGVHV-GQEDMAI 104
>ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter pylori J99]
Length = 578
Score = 23.5 bits (49), Expect = 6.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 16 VGVDITESKMLTK-FASSLLMNLYEYIGNGKDPKEASDHAMR 56
+ V + + ++T F+SS L E I G+DP++A A R
Sbjct: 19 IEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQR 60
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 23.5 bits (49), Expect = 6.4
Identities = 15/49 (30%), Positives = 26/49 (52%), Gaps = 5/49 (10%)
Query: 186 EIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLERALYAG 234
+IEK ++I+ L++ R + F+ ++ N+K NNL AL G
Sbjct: 391 DIEKYELQAIKRLDLQRCAKSKSFKASYNHNIK-----INNLANALRQG 434
>ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylori J99]
Length = 344
Score = 23.1 bits (48), Expect = 8.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 184 RIEIEKECRESIRLLEIYRNQFKE---VFERYFHGNVKFFNENFNNLER 229
R+ +EK +E+I +++ F E ERY+ V F N N ++
Sbjct: 18 RVFLEKT-KENIIIIDDLSTGFLEHIKALERYYPNRVAFIQANLNETQK 65
>ref|NP_223058.1| putative hemolysin [Helicobacter pylori J99]
Length = 235
Score = 23.1 bits (48), Expect = 8.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 150 VGAIIGNFVGALL----SKTLCENLRDVLKEAKLARQRRIEIEKEC 191
VGA G F L K LC ++ + + L +RIE +EC
Sbjct: 83 VGASKGGFSQVALLKGAKKVLCVDVGKMQLDESLKNDQRIECYEEC 128
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290,916
Number of Sequences: 1491
Number of extensions: 14008
Number of successful extensions: 53
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 15
length of query: 274
length of database: 494,079
effective HSP length: 76
effective length of query: 198
effective length of database: 380,763
effective search space: 75391074
effective search space used: 75391074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)