BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644708|ref|NP_206878.1| hypothetical protein
[Helicobacter pylori 26695]
(85 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 126 7e-32
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 31 0.004
ref|NP_223588.1| putative outer membrane protein [Helicobac... 29 0.020
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 29 0.020
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 28 0.044
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 27 0.057
ref|NP_223089.1| putative [Helicobacter pylori J99] 27 0.057
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 27 0.075
ref|NP_223820.1| putative Outer membrane function [Helicoba... 26 0.13
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 26 0.17
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 25 0.37
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 0.37
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 24 0.63
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 23 0.83
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 23 0.83
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 23 0.83
ref|NP_224090.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 22 2.4
ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99] 22 2.4
ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 22 3.1
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 22 3.1
ref|NP_223662.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 21 4.1
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 21 5.3
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 21 5.3
ref|NP_223401.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223644.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 20 9.1
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 20 9.1
ref|NP_223268.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobact... 20 9.1
ref|NP_222831.1| putative [Helicobacter pylori J99] 20 9.1
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 126 bits (317), Expect = 7e-32
Identities = 61/68 (89%), Positives = 65/68 (94%)
Query: 1 MKKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKT 60
MKK+FLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTP ANNNTPI+TSMFG+N+
Sbjct: 1 MKKIFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPSANNNTPINTSMFGNNQA 60
Query: 61 APAQETQS 68
APAQET S
Sbjct: 61 APAQETPS 68
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 31.2 bits (69), Expect = 0.004
Identities = 13/28 (46%), Positives = 21/28 (74%)
Query: 4 VFLGMALAFSVSMAEKSGAFLGGGFQYS 31
+FL ++L S S+AE++GA+ GF+YS
Sbjct: 12 LFLSLSLFLSFSIAEENGAYASVGFEYS 39
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 28.9 bits (63), Expect = 0.020
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 1 MKKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLE--------NQNTTRTPGANNNTPIDT 52
M+K+F+ + L ++ EK+G F+ GF+ LE + T T N P DT
Sbjct: 1 MRKLFIPLLLFSALEANEKNGFFIEAGFETGLLEGTQTQEKRHTTTKNTYATYNYLPTDT 60
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 28.9 bits (63), Expect = 0.020
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 1 MKKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLE--------NQNTTRTPGANNNTPIDT 52
M+K+F+ + L ++ EK+G F+ GF+ LE + T T N P DT
Sbjct: 1 MRKLFIPLLLFSALEANEKNGFFIEAGFETGLLEGTQTQEKRHTTTKNTYATYNYLPTDT 60
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 27.7 bits (60), Expect = 0.044
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 1 MKKVFLGMALAFS----VSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFG 56
+KK L AL FS V++AE G ++G G+Q + + NN D G
Sbjct: 24 LKKGLLKTALLFSLPLSVALAEDDGFYMGVGYQIGGAQQNINNKGSTLRNNVIDDFRQVG 83
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 27.3 bits (59), Expect = 0.057
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 2 KKVFLGMALAFSVSMAEKSGAFLGGGFQ 29
+ +FL +AL S+S AE G F G+Q
Sbjct: 6 RTLFLSLALCASISYAEDDGGFFTVGYQ 33
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 27.3 bits (59), Expect = 0.057
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 11 AFSVSMAEKSGAFLGGGFQYSNL 33
+FS++ +KSG FLGGG+ Y L
Sbjct: 80 SFSIA-DDKSGVFLGGGYAYGEL 101
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 26.9 bits (58), Expect = 0.075
Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 1/31 (3%)
Query: 2 KKVFLGMALAF-SVSMAEKSGAFLGGGFQYS 31
+K L ++L F S +AE++GA+ GF+YS
Sbjct: 4 QKTLLSLSLLFLSYCIAEENGAYASVGFEYS 34
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 26.2 bits (56), Expect = 0.13
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 2 KKVFLGMALAFSVSMAEKSGAFLGGGFQ 29
K + L + LA S+ AE +G FL G+Q
Sbjct: 6 KTILLSLTLAASLLHAEDNGVFLSVGYQ 33
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 25.8 bits (55), Expect = 0.17
Identities = 14/36 (38%), Positives = 24/36 (65%), Gaps = 1/36 (2%)
Query: 1 MKKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQ 36
+K++ L AL ++ AE+S AF+G +Q S ++NQ
Sbjct: 2 LKRIVLLGALGV-LANAEESAAFVGVNYQVSMIQNQ 36
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 24.6 bits (52), Expect = 0.37
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 2 KKVFLG-MALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKT 60
+KV LG + + S + F+ G +Y N NN IDTS+ + K
Sbjct: 221 QKVRLGDIGITISGLAGKTKQDFINGNAKYITFLN--------VLNNVIIDTSILENVKI 272
Query: 61 APAQETQSASKPDTKVNPSASWMKK 85
P ++ S K D N S+ K+
Sbjct: 273 YPNEKQNSFKKYDLFFNTSSETPKE 297
Score = 24.6 bits (52), Expect = 0.37
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 2 KKVFLG-MALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKT 60
+KV LG + + S + F+ G +Y N NN IDTS+ + K
Sbjct: 425 QKVRLGDIGITISGLAGKTKQDFINGNAKYITFLN--------VLNNVIIDTSILENVKI 476
Query: 61 APAQETQSASKPDTKVNPSASWMKK 85
P ++ S K D N S+ K+
Sbjct: 477 YPNEKQNSFKKYDLFFNTSSETPKE 501
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 24.6 bits (52), Expect = 0.37
Identities = 19/67 (28%), Positives = 29/67 (42%), Gaps = 5/67 (7%)
Query: 12 FSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPI--DTSMFGSNKTAPAQET--- 66
++ S A S F GG N ++ + +NNT I D S+ +N T+
Sbjct: 932 YNGSQAAFSSLFFNGGTLSLNANSKLNASSASFSNNTTINLDDSVLNANNTSSLNANINF 991
Query: 67 QSASKPD 73
Q AS+ D
Sbjct: 992 QGASQAD 998
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 23.9 bits (50), Expect = 0.63
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 26 GGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASKPD 73
G + YS+ NQ + GANN S F +N+ E Q A D
Sbjct: 1063 GSYGYSSFSNQANSLNSGANNANFGVYSRFFANQHEFDFEAQGALGSD 1110
Score = 20.8 bits (42), Expect = 5.3
Identities = 11/26 (42%), Positives = 12/26 (45%)
Query: 27 GFQYSNLENQNTTRTPGANNNTPIDT 52
G NLE Q R NNN +DT
Sbjct: 746 GISNVNLEEQFKERLALYNNNNRMDT 771
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 23.5 bits (49), Expect = 0.83
Identities = 17/67 (25%), Positives = 29/67 (42%), Gaps = 16/67 (23%)
Query: 6 LGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPG--------------ANNNTPID 51
L ++L+F+ AE+ G F+ G++ + Q + PG NNT I+
Sbjct: 30 LALSLSFNPVGAEEDGGFMTFGYELGQVVQQ--VKNPGKIKAEELAGLLNSTTTNNTNIN 87
Query: 52 TSMFGSN 58
+ G N
Sbjct: 88 IAGTGGN 94
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 23.5 bits (49), Expect = 0.83
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 6 LGMALAFSVSMAEKSGAFLGGGFQYSNL-----ENQNT 38
L +AL + K G F GGG +Y+ L +NQNT
Sbjct: 189 LKLALKTEKMLFFKIGVFGGGGVEYAILWSPQYKNQNT 226
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 23.5 bits (49), Expect = 0.83
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 1 MKKVFLGMALAFSVSMAEKSGAFLGGGFQ 29
MKK L A S+ AE +G F+ G+Q
Sbjct: 1 MKKTLLLSLSASSLLNAEDNGFFISAGYQ 29
Score = 22.3 bits (46), Expect = 1.8
Identities = 17/57 (29%), Positives = 24/57 (41%), Gaps = 7/57 (12%)
Query: 29 QYSNLENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASKPDTKVNPSASWMKK 85
Q +L QN N N P D + + S A AQ + ++ K+ A MKK
Sbjct: 287 QAQSLNQQN-------NQNAPQDFNPYTSADRAFAQNMLNHAQAQAKILELADQMKK 336
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 23.1 bits (48), Expect = 1.1
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Query: 2 KKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTS 53
KK+++ + + S+ +A L G + N + T T NN TP DT+
Sbjct: 60 KKLYIALGILLSL-IALIVALSLLLGHKKENKQTSLQTNTATTNNETPNDTN 110
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 21.9 bits (45), Expect = 2.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 21 GAFLGGGFQYSNLENQNTTRTPGA--NNN 47
G+ GG F + N+++ T G NNN
Sbjct: 236 GSVNGGNFGFDNVDSNGATTISGVTFNNN 264
>ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99]
Length = 293
Score = 21.9 bits (45), Expect = 2.4
Identities = 16/56 (28%), Positives = 23/56 (40%), Gaps = 3/56 (5%)
Query: 6 LGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKTA 61
+G + A V + AFLG F N+ N +N TP ++FG A
Sbjct: 88 MGSSSAMIVGAVASAFAFLGFAFDRENILNTALIYENHPDNITP---AVFGGYNAA 140
>ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 21.6 bits (44), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (47%)
Query: 11 AFSVSMAEKSGAFLGGGFQYSNLENQNTTRT 41
+F +S S L SN+ N NTTRT
Sbjct: 5 SFDISGYGLSAQRLRANLISSNIANANTTRT 35
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/39 (28%), Positives = 18/39 (45%)
Query: 16 MAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSM 54
+A K+ LGG F+ L + N ++N T+M
Sbjct: 109 IANKATEILGGNFREKKLIHPNDDVNMSQSSNDTFPTAM 147
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 21.6 bits (44), Expect = 3.1
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 20 SGAFLG-GGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASKPDTKV 76
SG LG GG N +T + + N T +N T P+ + + S KV
Sbjct: 284 SGGSLGNGGLFPIPFGNGDTNNSNNSTNTTSPTNGSSSNNATNPSSQENNYSSQYCKV 341
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 21.2 bits (43), Expect = 4.1
Identities = 8/27 (29%), Positives = 15/27 (54%)
Query: 53 SMFGSNKTAPAQETQSASKPDTKVNPS 79
S+F + + P+ KPD K++P+
Sbjct: 165 SVFVAKEVPPSASVMLKLKPDMKLSPT 191
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 20.8 bits (42), Expect = 5.3
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 2 KKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTT 39
K +F G+ S+ A S + G ++++LEN T
Sbjct: 42 KDIFTGIVPRPSIPRAASSQLCMRAGGKHNDLENVGYT 79
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 20.8 bits (42), Expect = 5.3
Identities = 10/34 (29%), Positives = 17/34 (49%)
Query: 48 TPIDTSMFGSNKTAPAQETQSASKPDTKVNPSAS 81
TP + + P ET++ +K DT+ N + S
Sbjct: 236 TPKTETPKTETRKVPKAETKAKAKADTEENKAPS 269
>ref|NP_223401.1| putative [Helicobacter pylori J99]
Length = 419
Score = 20.8 bits (42), Expect = 5.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 1 MKKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTT 39
MKK + + L SV +A G +S L NQ T
Sbjct: 5 MKKKYFTLLLQSSVVLAVFIGCSSTRNHTFSALSNQENT 43
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 20.4 bits (41), Expect = 7.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 34 ENQNTTRTPGANNNTPIDTSM 54
E N + ANNN PI ++
Sbjct: 426 EGGNERQNSSANNNNPIKNTI 446
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/53 (20%), Positives = 23/53 (42%)
Query: 7 GMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNK 59
G++ + + K+ L GG N++ + G + N+ ++ S NK
Sbjct: 387 GVSFDWEILENAKTPFMLAGGLNLDNIQKALKIKALGLDFNSGLEISPGIKNK 439
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 20.0 bits (40), Expect = 9.1
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 17 AEKSGAFLGGGFQYSNLENQNT 38
A++S +LG G+Q ++++ ++
Sbjct: 44 ADRSAFYLGLGYQLGSIQHNSS 65
>ref|NP_223268.1| putative [Helicobacter pylori J99]
Length = 205
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/26 (34%), Positives = 12/26 (45%)
Query: 1 MKKVFLGMALAFSVSMAEKSGAFLGG 26
M K++ +L F K A LGG
Sbjct: 65 MDKIYHDASLGFDAGYVLKKKALLGG 90
>ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobacter pylori J99]
Length = 307
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 26 GGFQYSNLENQNTTRTPGANNNTPI 50
G F + N E N G N+P+
Sbjct: 20 GAFNFVNFEMLNAIFEAGNEENSPL 44
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/39 (25%), Positives = 16/39 (40%)
Query: 33 LENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASK 71
+E + T P N TPI ++K +Q A +
Sbjct: 261 IEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQE 299
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.307 0.121 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,406
Number of Sequences: 1491
Number of extensions: 3312
Number of successful extensions: 35
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 85
length of database: 494,079
effective HSP length: 61
effective length of query: 24
effective length of database: 403,128
effective search space: 9675072
effective search space used: 9675072
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 40 (20.0 bits)