BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645388|ref|NP_207562.1| molybdopterin-guanine
dinucleotide biosynthesis protein A (mobA) [Helicobacter pylori 26695]
(201 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNT... 352 4e-99
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 28 0.22
ref|NP_223869.1| putative [Helicobacter pylori J99] 27 0.38
ref|NP_223400.1| putative [Helicobacter pylori J99] 26 0.85
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 25 1.4
ref|NP_224088.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_223512.1| putative [Helicobacter pylori J99] 24 3.2
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 23 4.2
ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERA... 23 7.2
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 23 7.2
ref|NP_223228.1| putative [Helicobacter pylori J99] 22 9.4
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 22 9.4
>ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A
[Helicobacter pylori J99]
Length = 209
Score = 352 bits (903), Expect = 4e-99
Identities = 177/201 (88%), Positives = 185/201 (91%)
Query: 1 MKNPIIDNIPCVLLAGGKSSRFITNNIQTNKALMPLKSYSSLLEYQYTRLLKLFKKVIIS 60
MKNPII+NIPCVLLAGGKSSRFI NNI NKALMPLKSY SLLEYQYTRLLKLFK+VIIS
Sbjct: 1 MKNPIINNIPCVLLAGGKSSRFIINNIPINKALMPLKSYPSLLEYQYTRLLKLFKQVIIS 60
Query: 61 TKKSYELNAPYLLEKESDLFSPLFGIHNAFLTLQTPYIFFIPIDTPLVSFESIKALCGIK 120
KKSYELNAPYLLEKE LFSPLFGIHNAFLTLQTPYIFFI IDTPLVSFESIK LCGI+
Sbjct: 61 AKKSYELNAPYLLEKEGGLFSPLFGIHNAFLTLQTPYIFFIAIDTPLVSFESIKILCGIQ 120
Query: 121 NFSVTYAKSPTKEHYLISLWHQNTLNALIYALKTQNYRLSDLVKNTSSVAINFDKEEEFL 180
NFSV YAKSPTKEHYLISLWHQ+ LNAL Y LKTQNYRLSDL+KN SS AI+FDKEEEFL
Sbjct: 121 NFSVVYAKSPTKEHYLISLWHQSILNALNYTLKTQNYRLSDLIKNASSTAIHFDKEEEFL 180
Query: 181 NLNTLKDYELAVQILKKRANG 201
NLNTLKDYELAVQILK+ +NG
Sbjct: 181 NLNTLKDYELAVQILKEGSNG 201
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 27.7 bits (60), Expect = 0.22
Identities = 13/30 (43%), Positives = 21/30 (69%)
Query: 28 QTNKALMPLKSYSSLLEYQYTRLLKLFKKV 57
+T + L PL + +LLEY + RL K+FK++
Sbjct: 341 KTFEFLAPLLNPKTLLEYVFFRLSKIFKRL 370
>ref|NP_223869.1| putative [Helicobacter pylori J99]
Length = 180
Score = 26.9 bits (58), Expect = 0.38
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 36 LKSYSSLLEYQYTRLLKLFKKVIIS 60
LK + SLL+Y+ +L KLF+ + S
Sbjct: 148 LKEHDSLLDYKLLQLFKLFENALFS 172
>ref|NP_223400.1| putative [Helicobacter pylori J99]
Length = 327
Score = 25.8 bits (55), Expect = 0.85
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 43 LEYQYTRLLKLFKKVIISTKKSYELNAPYLLEKESDLFSPLFGIHNAFLTLQTPYIFFIP 102
L+ ++L L K+ ++ +K E+ L KE D +TL TP I P
Sbjct: 22 LQISKNQVLNLIKEGLVFCQKK-EVKKGGLALKEGDA-----------ITLLTPKIVPKP 69
Query: 103 IDTPL-----VSFESIKALCGIKNFSVTYAKSPTKEHYLISLWHQNTLNALIYALKTQNY 157
+ L V FE L K ++ K+P+ + + W LK+QNY
Sbjct: 70 LKKELDLEIEVIFEDEDLLVLNKPPNLVVHKAPSVKEPTLVDW-----------LKSQNY 118
Query: 158 RLSDL-VKNTSSVAINFDKE 176
LS+L +K + DK+
Sbjct: 119 ELSNLGLKERYGIVHRLDKD 138
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 25.0 bits (53), Expect = 1.4
Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 23/101 (22%)
Query: 103 IDTPLVS-FESIKALCGIK--NFSVTYAKSPTKEHYLIS-------LWH---QNTLNALI 149
I TPL+ FE L ++ +FS+ Y YL+ WH +N LNA +
Sbjct: 128 IGTPLIELFEKRSPLWVLETSSFSLHYTNKAYPLIYLLINVEADHLTWHCNFENYLNAKL 187
Query: 150 YAL----KTQ------NYRLSDLVKNTSSVAINFDKEEEFL 180
L KT ++ +V+N+ + I FDK EE L
Sbjct: 188 KVLTLMPKTSLAILPLKFKEHPIVQNSQAQKIFFDKSEEVL 228
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 24.6 bits (52), Expect = 1.9
Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 10/178 (5%)
Query: 25 NNIQTNKALMPLKSYSSLLEYQYTRLLKLFKKVIISTKKSYELNAPYLLEKESDLFSPLF 84
N ++T LK Y L T L++ ++ ++ SYELNA L+K+ +F L
Sbjct: 20 NALKTEIKETYLKEYKDLKLEIETINLEIPERFSHASILSYELNASNKLKKDGVVFLRLE 79
Query: 85 GIHNAFLTLQTPYIFFIPIDTPLVSFESIKALCGIKNFSVTYAKSPTKEHYLISLWHQNT 144
N L+ P + + + S ++ K+ IK A + KE L
Sbjct: 80 NEPN----LRLPVRYSV-----IGSMQAFKSASTIKKDENITANNTKKERVLFGALSNPL 130
Query: 145 LNALIYALKTQNYRLSDLVKNTSSVAINFDKEEEFLNLNTLKDYELAVQI-LKKRANG 201
L I + +++ D + + + + ++ +++++I LK NG
Sbjct: 131 LEGAIDKVSAKHFIPPDTLLSADKTQALIIVRKNDIITGVYEEGQISIEISLKALENG 188
>ref|NP_223512.1| putative [Helicobacter pylori J99]
Length = 174
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 23 ITNNIQTNKALMPLKSYSSLLEYQYTRLLK 52
ITN N+ LK + L EY LLK
Sbjct: 52 ITNQSGINRGYYTLKDFEQLTEYLQESLLK 81
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 23.5 bits (49), Expect = 4.2
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 143 NTLNALIYALKTQNYRLSDLVKNTSSVAINFDKEEEFLNLNTL 185
NT N+ K QN ++ N+ S + N K F NTL
Sbjct: 1123 NTFNSYNINAKAQNLIFNNNSFNSGSYSFNDTKNVTFKGTNTL 1165
>ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERASE-ISOMERASE
[Helicobacter pylori J99]
Length = 345
Score = 22.7 bits (47), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 68 NAPYLLEKESDLFSPLFGIHNAFLTLQTPYIFF 100
NA +L + + LFG +AFL +T +FF
Sbjct: 56 NALVVLNDTKVIKARLFGSKHAFLPSKTTEVFF 88
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 22.7 bits (47), Expect = 7.2
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 96 PYIFFIPIDTPLVSFESIKALCGIKNFSV 124
P I I P+++F S+ +L +NF V
Sbjct: 365 PIIALILFVMPMIAFYSVSSLKRFRNFKV 393
>ref|NP_223228.1| putative [Helicobacter pylori J99]
Length = 416
Score = 22.3 bits (46), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 84 FGIHNAFLTLQTPYIFF 100
FGIHN F +TP + F
Sbjct: 308 FGIHNLFFFAKTPEMPF 324
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 22.3 bits (46), Expect = 9.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 58 IISTKKSYELNAPYLLE 74
+I K S E+NAP+L++
Sbjct: 120 VIDPKVSLEINAPFLVD 136
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,322
Number of Sequences: 1491
Number of extensions: 10149
Number of successful extensions: 37
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 12
length of query: 201
length of database: 494,079
effective HSP length: 73
effective length of query: 128
effective length of database: 385,236
effective search space: 49310208
effective search space used: 49310208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)