BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645395|ref|NP_207569.1| hypothetical protein
[Helicobacter pylori 26695]
(84 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223431.1| putative [Helicobacter pylori J99] 144 2e-37
ref|NP_222951.1| putative [Helicobacter pylori J99] 25 0.28
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 25 0.37
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 23 1.1
ref|NP_223950.1| 50S RIBOSOMAL PROTEIN L16 [Helicobacter py... 21 4.1
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 21 5.4
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 21 5.4
ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helico... 20 9.2
ref|NP_223149.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 20 9.2
>ref|NP_223431.1| putative [Helicobacter pylori J99]
Length = 74
Score = 144 bits (364), Expect = 2e-37
Identities = 73/74 (98%), Positives = 74/74 (99%)
Query: 11 LKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI 70
+KKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI
Sbjct: 1 MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI 60
Query: 71 AEGKIDIDRIDERN 84
AEGKIDIDRIDERN
Sbjct: 61 AEGKIDIDRIDERN 74
>ref|NP_222951.1| putative [Helicobacter pylori J99]
Length = 105
Score = 25.0 bits (53), Expect = 0.28
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 5 QNKRISLKKERTESLVAQALKNIGNDRYMLDNLVFAR 41
QNK L KE+T+S A LK + + +DN ++ +
Sbjct: 28 QNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPLYPK 64
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 24.6 bits (52), Expect = 0.37
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 5/48 (10%)
Query: 11 LKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPK 58
L KE + L + K +GN +L N+V+ NA K L NM PK
Sbjct: 2128 LGKEGIDKLFGE--KGLGN---VLSNIVYEESLNDNAIPKDLANMIPK 2170
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 9/44 (20%)
Query: 1 MDRTQNKRISLKKERTESLVAQALKN---------IGNDRYMLD 35
+ +TQNK + L E + ++++ LK IGN Y LD
Sbjct: 265 ISQTQNKHLCLYFENCDVILSKGLKEEQESLYFTYIGNVLYKLD 308
>ref|NP_223950.1| 50S RIBOSOMAL PROTEIN L16 [Helicobacter pylori J99]
Length = 141
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 64 DIAIREIAEGKIDIDRID 81
DIAI+ I G+ID +I+
Sbjct: 31 DIAIKAIEHGRIDSRQIE 48
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 20.8 bits (42), Expect = 5.4
Identities = 6/22 (27%), Positives = 15/22 (67%)
Query: 57 PKRHKLVDIAIREIAEGKIDID 78
PK +++ + +++GK++ID
Sbjct: 87 PKAYQISQFEVPIVSDGKLEID 108
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 20.8 bits (42), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 50 KTLVNMDPKRHKLVDIAIRE 69
KTL P+ HK+ AI+E
Sbjct: 305 KTLKAFSPEFHKIASKAIKE 324
>ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helicobacter pylori J99]
Length = 255
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/9 (88%), Positives = 9/9 (99%)
Query: 40 ARVKQLNAG 48
AR+KQLNAG
Sbjct: 90 ARLKQLNAG 98
>ref|NP_223149.1| putative [Helicobacter pylori J99]
Length = 282
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 2 DRTQNKRISLKKERTESLVAQALKNIGNDRYML 34
DR + R E ++L+ ++ IG D +++
Sbjct: 196 DRVAHYRAKTSLEEVKNLILESDLYIGGDSFLI 228
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 20.0 bits (40), Expect = 9.2
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 7 KRISLKKERTESLVAQALKNIGNDRY 32
K +++ +ER + + A+K + + +Y
Sbjct: 646 KELNVTRERVRQIESSAIKKLRSPQY 671
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.135 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,585
Number of Sequences: 1491
Number of extensions: 2531
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 84
length of database: 494,079
effective HSP length: 60
effective length of query: 24
effective length of database: 404,619
effective search space: 9710856
effective search space used: 9710856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)