BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645399|ref|NP_207573.1| hypothetical protein
[Helicobacter pylori 26695]
(90 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223435.1| putative [Helicobacter pylori J99] 159 9e-42
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 27 0.056
ref|NP_224088.1| putative [Helicobacter pylori J99] 25 0.28
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 24 0.47
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 23 0.81
ref|NP_223923.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223655.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_224195.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Hel... 22 1.8
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 22 2.4
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 2.4
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 22 3.1
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 22 3.1
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 3.1
ref|NP_223770.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 21 4.0
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 21 4.0
ref|NP_223457.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_222847.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 20 6.9
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 20 9.0
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 20 9.0
>ref|NP_223435.1| putative [Helicobacter pylori J99]
Length = 88
Score = 159 bits (402), Expect = 9e-42
Identities = 81/88 (92%), Positives = 84/88 (95%)
Query: 3 VKKIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLS 62
+KKIVVS CVAL FLSAD AQANKAIS+ADLI+EIRDLKKIISAQNTEIN LRKVQEVLS
Sbjct: 1 MKKIVVSLCVALGFLSADPAQANKAISDADLIEEIRDLKKIISAQNTEINQLRKVQEVLS 60
Query: 63 GQLGDMRKDILSTRDYCISLRPYIYNWR 90
GQLGDMRKDILSTRDYCISLRPYIYNWR
Sbjct: 61 GQLGDMRKDILSTRDYCISLRPYIYNWR 88
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 27.3 bits (59), Expect = 0.056
Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 2/61 (3%)
Query: 4 KKIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSG 63
++ + +W + + +D+ Q NKA + D K IRD + Q +IN L + + S
Sbjct: 336 RQFLANWIKFMLNIDSDNQQDNKASQSID--KVIRDTYNYMGDQKNQINLLEIAKNLGSS 393
Query: 64 Q 64
+
Sbjct: 394 E 394
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 25.0 bits (53), Expect = 0.28
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 5 KIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQ 64
KI+ + + L L A A K +KE +DLK I N EI +LS +
Sbjct: 2 KILTLFLIGLNALFALDLNALKTEIKETYLKEYKDLKLEIETINLEIPERFSHASILSYE 61
Query: 65 LGDMRK 70
L K
Sbjct: 62 LNASNK 67
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 24.3 bits (51), Expect = 0.47
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 25 NKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
N I ++ R+L +I+A + + ++ K+Q +LGD+ K
Sbjct: 208 NVEIDGGRIVNSQRELSILINANSYSVADVEKIQVGNHVRLGDIAK 253
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 23.5 bits (49), Expect = 0.81
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 19 ADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQE------VLSGQLGDMRKDI 72
+DS ++ K N + K++ DLK + Q+ + RK+Q+ ++G +R
Sbjct: 49 SDSLESFKEQENKEKAKQLMDLKAL---QSVYFSKNRKLQDNNFNVLYVAGNTNKIRLRY 105
Query: 73 LSTRDYCISLRPYIY 87
T + P IY
Sbjct: 106 AMTTTFIFDNDPIIY 120
>ref|NP_223923.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.1 bits (48), Expect = 1.1
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 3 VKKIVVSWCVALAFLSADSAQA-----NKAISNADLIKEIR--DLKKIISAQNTEINNLR 55
+KK + S + L+ +S +A+ +++ EIR L+ A+ NNL+
Sbjct: 2 IKKTLASVLLGLSLMSVLNAKECVSPITRSVKYHQQSAEIRALQLQSYKMAKMALDNNLK 61
Query: 56 KVQEVLSGQLGDMRKDILSTRDY 78
V++ + D+ + +L+T DY
Sbjct: 62 LVKDKKPAVILDLDETVLNTFDY 84
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 23.1 bits (48), Expect = 1.1
Identities = 8/30 (26%), Positives = 19/30 (62%)
Query: 33 LIKEIRDLKKIISAQNTEINNLRKVQEVLS 62
++ I+ ++IIS ++N L+KV +++
Sbjct: 41 MVDSIKRYEEIISKAQAQVNQLQKVNNMIN 70
>ref|NP_224195.1| putative [Helicobacter pylori J99]
Length = 197
Score = 22.3 bits (46), Expect = 1.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 3 VKKIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKK 42
V+ + +S+ ALA + A S QAN + D IK+ + KK
Sbjct: 152 VEGLDISYSHALAIIEAQSIQANLFL---DEIKQSQKEKK 188
>ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Helicobacter pylori J99]
Length = 323
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 19 ADSAQANKAISNADLIKEIRD 39
AD A++ D++KEIRD
Sbjct: 240 ADILMVKPALAYLDIVKEIRD 260
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 21.9 bits (45), Expect = 2.4
Identities = 10/47 (21%), Positives = 25/47 (52%)
Query: 39 DLKKIISAQNTEINNLRKVQEVLSGQLGDMRKDILSTRDYCISLRPY 85
D +K I+ + ++++ R + +LSG +G + ++ +C L +
Sbjct: 488 DQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGF 534
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.9 bits (45), Expect = 2.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 28 ISNADLIKEIRDLKKIIS 45
++ ADLI +I+DLK S
Sbjct: 694 LNKADLINKIQDLKNTFS 711
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 58 QEVLSGQLGDMRKDILSTRDYCISLRPYIY 87
Q L+G++G +++ I ST++ I+ +Y
Sbjct: 275 QPTLAGEMGKLQERIASTKNGSITSVQAVY 304
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/45 (24%), Positives = 23/45 (50%)
Query: 23 QANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGD 67
+ +KAIS+ ++ D+ I+ Q+ + Q +++ LGD
Sbjct: 396 KGDKAISHVEVSNNTYDVTFDINGQDETLQETFSNQSIITQFLGD 440
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 21.6 bits (44), Expect = 3.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 22 AQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRKD 71
A + +SN L+ E++ I EI + + V+EV++ + + KD
Sbjct: 108 ASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKD 157
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 21.2 bits (43), Expect = 4.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 36 EIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRKDILSTRD 77
+I+DL I +Q + L+ QEV + L + + R+
Sbjct: 74 KIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRN 115
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 21.2 bits (43), Expect = 4.0
Identities = 11/53 (20%), Positives = 25/53 (46%)
Query: 18 SADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
S + +A + + DL++ + I +Q ++I+ L+K ++RK
Sbjct: 212 STEVLEAMRLLEENDLLEHFHMIHFHIGSQISDISPLKKALREAGNLYAELRK 264
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 21.2 bits (43), Expect = 4.0
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 35 KEIRDLKKIISAQNTEINNLRKVQEVLSGQLG 66
KE++ + + + + E+N L +++ + QLG
Sbjct: 487 KEVKSMFEEMDEEEDELNKLGDLRKKVEDQLG 518
>ref|NP_223457.1| putative [Helicobacter pylori J99]
Length = 279
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 7 VVSWCVALAFLSADSAQANKAI 28
VV W + +FL+A+S Q + +
Sbjct: 35 VVIWGLGCSFLNANSVQLEETL 56
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 55 RKVQEVLSGQLGDM--RKDILSTRD 77
++ +E+++ QLGDM R+++ S D
Sbjct: 8 QEYEEIITDQLGDMQLRENLRSAMD 32
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 20.4 bits (41), Expect = 6.9
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 28 ISNADLIKEIRDLKKIISA 46
ISNA KEI + K+I A
Sbjct: 16 ISNALYAKEISEADKVIKA 34
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 20.0 bits (40), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 25 NKAISNADLIKEIRDLKKIISAQNTEINNLR 55
NKA+ + E +LK +N EIN ++
Sbjct: 718 NKALKMKNKAYEELELKAFHQYKNLEINEIK 748
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 33 LIKEIRDLKKIISAQNTEINNL 54
L+K I KK S + +IN+L
Sbjct: 78 LLKTIEPFKKFASLEFIDINSL 99
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,212
Number of Sequences: 1491
Number of extensions: 2593
Number of successful extensions: 22
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 90
length of database: 494,079
effective HSP length: 66
effective length of query: 24
effective length of database: 395,673
effective search space: 9496152
effective search space used: 9496152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)