BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645401|ref|NP_207575.1| hypothetical protein
[Helicobacter pylori 26695]
(455 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 855 0.0
ref|NP_223061.1| putative Outer membrane protein [Helicobac... 331 3e-92
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 326 7e-91
ref|NP_223443.1| putative Outer membrane protein [Helicobac... 325 1e-90
ref|NP_223568.1| putative Outer membrane protein [Helicobac... 282 1e-77
ref|NP_223811.1| putative Outer membrane protein [Helicobac... 251 4e-68
ref|NP_223156.1| Outer membrane protein [Helicobacter pylor... 188 2e-49
ref|NP_223157.1| putative Outer membrane protein [Helicobac... 186 1e-48
ref|NP_223120.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 35 0.004
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 35 0.004
ref|NP_223495.1| putative Outer membrane protein [Helicobac... 29 0.28
ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMIL... 29 0.28
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 28 0.63
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 26 2.4
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 4.1
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 25 5.3
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 25 5.3
ref|NP_224062.1| putative [Helicobacter pylori J99] 24 9.1
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 24 9.1
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 855 bits (2208), Expect = 0.0
Identities = 409/455 (89%), Positives = 431/455 (93%)
Query: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA 60
MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAES SKVGFNHSKLNSKEGIFPTATFVTA
Sbjct: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESVSKVGFNHSKLNSKEGIFPTATFVTA 60
Query: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWW 120
TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQ+YGSELF+ IGRWW
Sbjct: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQIYGSELFYLIGRWW 120
Query: 121 GYLGDAPWKDSRIESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFEL 180
G+LG+APWKDS IESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMS YTQGFEL
Sbjct: 121 GFLGNAPWKDSLIESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSSYTQGFEL 180
Query: 181 DYKINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQA 240
DYKINSKIALKWFSSFGRALA GQWIRDWYAPIVTEDGRK+V GIHA QLYFS+KHVQ
Sbjct: 181 DYKINSKIALKWFSSFGRALAFGQWIRDWYAPIVTEDGRKEVYDGIHAAQLYFSSKHVQV 240
Query: 241 TPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGE 300
PF YFSPK Y APG+KIHIDSNPKF+GLGLR+QT INVIFPVYAKDLYDV WRNSKIGE
Sbjct: 241 MPFAYFSPKIYGAPGVKIHIDSNPKFKGLGLRAQTTINVIFPVYAKDLYDVYWRNSKIGE 300
Query: 301 WGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTA 360
WGASLLIHQRFD NEFNFGFGYYQNFGNANARIGWYGNPIPF+ R+NS+YG VFSNA+TA
Sbjct: 301 WGASLLIHQRFDYNEFNFGFGYYQNFGNANARIGWYGNPIPFNYRNNSVYGGVFSNAITA 360
Query: 361 DSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSM 420
D+VSGYVFGGGVYRGFLWGILGRYTYATRASERSINL+LGY+WGSFA VDVNL+YY VSM
Sbjct: 361 DAVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLNLGYKWGSFARVDVNLEYYVVSM 420
Query: 421 HTGYKVNDLTSPFNKAFKANTQDRSNLMVSVKFFF 455
H GY+++ LT PFNKAFKA+ QDRSNLMVS+KFFF
Sbjct: 421 HNGYRLDYLTGPFNKAFKADAQDRSNLMVSMKFFF 455
>ref|NP_223061.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 331 bits (848), Expect = 3e-92
Identities = 199/473 (42%), Positives = 274/473 (57%), Gaps = 43/473 (9%)
Query: 14 ILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPK 73
+L + + AFDYK +AESFSKVGFN K++ GI+PT TFVTA + + ++ L K
Sbjct: 17 VLSLSASVQAFDYKIEVLAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLSK 76
Query: 74 NIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD------ 125
+++ H L+ VGG +G +AYDSTK +Q GS ++ +IG W GYLG
Sbjct: 77 SLKDQGHVLEGKVGGTIGGIAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRALLD 129
Query: 126 -------APWKDSRI---------ESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMD 169
A D ++ ++ RNY++ N++L Y Y D F K GRY SN
Sbjct: 130 GTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFAAKGGRYQSNAP 189
Query: 170 FMSGYTQGFELDYKINSKIA----LKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYG 225
+MS YTQGFE+ KI K L WFSS+GRA A G+WI D+Y+P + ++YG
Sbjct: 190 YMSSYTQGFEISAKIKDKNEGSHKLWWFSSWGRAFAYGEWIYDFYSPRTVIKNGRTLNYG 249
Query: 226 IHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYA 285
IH V + K V +PFF FSP TY +PG+ + DSNP F G+G RS+T ++ PV+A
Sbjct: 250 IHLVDYTYERKGVSVSPFFQFSPGTYYSPGVAVGYDSNPNFNGVGFRSETKAYILLPVHA 309
Query: 286 KDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIR 345
D K G G SLLI QRFD NEFNFG +Y+ + NANA IG GNP+ D
Sbjct: 310 PLKRDTYRYAVKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFW 369
Query: 346 SNSIY--GLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRW 403
+NS+Y G S+ VTAD+VSG+VFGGGV++ +LWG L R+T A+E S +++GY+
Sbjct: 370 TNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGALANEASAAVNVGYKI 429
Query: 404 GSFASVDVNLQYYEVSMHTGYKVNDL-TSPFNKAFKANTQDRSNLM--VSVKF 453
+ V L+Y V H+G+ V +P +KA + DRS+LM +S KF
Sbjct: 430 SKSLTASVKLEYLGVMTHSGFTVGSYRPTPGSKALYS---DRSHLMTTLSAKF 479
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 326 bits (836), Expect = 7e-91
Identities = 178/438 (40%), Positives = 265/438 (59%), Gaps = 8/438 (1%)
Query: 21 LLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSL 80
L AF+Y+ S SFS++ FN S +NSK+GI+PT ++VT T LQVDS+LLPK IE H L
Sbjct: 6 LSAFEYQVSARVGSFSRIAFNQSIINSKKGIYPTGSYVTTTGALQVDSSLLPKGIENHKL 65
Query: 81 KIGVGGILGALAYDSTKTLIDQATHQV-YGSELFFFIGRWWGYLGDAPWKDSRIESDAHT 139
GVGG +GALAYDSTK LID+A + + ++++GRW GYL +R + +
Sbjct: 66 GFGVGGEIGALAYDSTKFLIDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQKAQNA 125
Query: 140 RNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRA 199
R YVLYN YL Y Y D F +KLGRY S F+SG+ QGFE+ Y+ K + WFS+FGRA
Sbjct: 126 RPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEIFYRW-KKFKIVWFSTFGRA 184
Query: 200 LAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIH 259
LA Q+IRD+YAP+ + ++ ++YG+H L + NK+++ PF +F PK + APG +I
Sbjct: 185 LANEQYIRDFYAPV---NYKQKINYGMHNFNLVYENKYIRIAPFIWFYPKNFNAPGFEIT 241
Query: 260 IDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFG 319
D+ ++ L R QT FP+Y+ L +R + +G+ A+L + QR + + FG
Sbjct: 242 HDTKSYWKSL-WRIQTTFYAWFPLYSDYLSKDYYRAALVGKKSAALFVFQRVNFRSYRFG 300
Query: 320 FGYYQNFGNANARIGWYGNPIP--FDIRSNSIYGLVFSNAVTADSVSGYVFGGGVYRGFL 377
+ Y+NFGNA+ ++GW G+PI +D + ++ Y +SN A+S++ F G + L
Sbjct: 301 WSVYKNFGNASVQLGWNGSPIDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSIKNLL 360
Query: 378 WGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAF 437
+ G+ TY+ RA +S+ + Y + + Y+++MH GYKV TS +N F
Sbjct: 361 VQLYGKLTYSPRADAQSLGVTFKYNLKKHIYFMLMVNGYQITMHKGYKVGFFTSGYNPDF 420
Query: 438 KANTQDRSNLMVSVKFFF 455
Q+RS LM S+ + F
Sbjct: 421 AQTIQNRSYLMSSMSYRF 438
>ref|NP_223443.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 499
Score = 325 bits (834), Expect = 1e-90
Identities = 185/484 (38%), Positives = 270/484 (55%), Gaps = 43/484 (8%)
Query: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVD- 67
LLF+ +++ L K AESFSKVGFN+ +N+ +GI+PT TF+T +QVD
Sbjct: 14 LLFLFFSQSEAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGIYPTETFMTIMAYMQVDF 73
Query: 68 SNLLPKNIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD 125
+ LLPK+ H L +GG GA+ YDSTK I++ T + YG+ + ++G W G +G
Sbjct: 74 TELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMTWNYVGYWGGLVGQ 133
Query: 126 APWK--------------DSRIESDA--------------------HTRNYVLYNSYLFY 151
PW D +++ HTRNYV+YN+YL Y
Sbjct: 134 KPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALAASTCAKTYADHTRNYVIYNAYLRY 193
Query: 152 SYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRALAAGQWIRDWYA 211
+Y D F ++ GRY S D+MSGY QG ++ + + WFSSFGR A +W+ ++Y+
Sbjct: 194 NYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGN-FKFWWFSSFGRGFAYNEWLYNFYS 252
Query: 212 P-IVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLG 270
P T + ++ G+HA + ++ K PF YFSP P I DSNP F GLG
Sbjct: 253 PKTYTLKNGQTINPGVHAFYIIWNYKGFSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLG 312
Query: 271 LRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNAN 330
RSQT + V+ P YAK +D G+ SL+I Q+F+ NE+NFGFG Y++FGNAN
Sbjct: 313 FRSQTDVTVLNPFYAKRFWDTYQFGMLAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNAN 372
Query: 331 ARIGWYGNPIPFDIRSNSIYGLV---FSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYA 387
IG++GN + FD +N++Y S + A++ + + FGGGV+R LWG+LGR TY
Sbjct: 373 WMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYG 432
Query: 388 TRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAFKANTQDRSNL 447
RA+E+ ++L+LGY++ S D+ +YY V MH GYK+ P + A QDRS++
Sbjct: 433 PRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMG-WNGPKLDSQPATDQDRSHI 491
Query: 448 MVSV 451
+
Sbjct: 492 FTEI 495
>ref|NP_223568.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 514
Score = 282 bits (722), Expect = 1e-77
Identities = 171/495 (34%), Positives = 260/495 (51%), Gaps = 60/495 (12%)
Query: 20 PLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHS 79
P+ AFDY+FSG E+FSK+GFN+S++N+K+GI+PT +F+ QV NLLPK E H
Sbjct: 21 PVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHR 80
Query: 80 LKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWG-----YLGDAPWKDSRIE 134
L + +GG + A+ YD TK I+QA +V+GS + FIG + G YLG A + +
Sbjct: 81 LSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPA-YAGTSQS 139
Query: 135 SDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYK----INSKIAL 190
+ H R YV+ ++L Y Y D F K GRY +N+DFMSG QG+E+ Y+ ++
Sbjct: 140 ASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRF 199
Query: 191 KWFSSFGRALAAGQWIRDWYA--PIVTEDGRKD-----VDYGIHAVQLYFSNKHVQATPF 243
W+SSFGR LA WI +++A P + + G ++YG H + +S K + A F
Sbjct: 200 WWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFF 259
Query: 244 FYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLY----------DVVW 293
+YF+PKTY APG K+ D+N F +G RSQ++I FP+Y + Y D
Sbjct: 260 YYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTP 319
Query: 294 RNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNP-------------- 339
S +G G +L I Q F + FN+ G+Y FGN++A +G + P
Sbjct: 320 HGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISV 379
Query: 340 -------IPFDIRSNSIYGLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYAT---- 388
I +D N+ Y + A++ + Y GG+++ F W + GR ++A
Sbjct: 380 TTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNAL 439
Query: 389 ----RASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSP-FNKA---FKAN 440
RA+E S+ + Y + ++ + YY ++ GY+ +P FN F AN
Sbjct: 440 GQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSAN 499
Query: 441 TQDRSNLMVSVKFFF 455
QDRS +M ++ F
Sbjct: 500 YQDRSYMMTNLTLKF 514
>ref|NP_223811.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 251 bits (640), Expect = 4e-68
Identities = 155/452 (34%), Positives = 230/452 (50%), Gaps = 23/452 (5%)
Query: 21 LLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSL 80
L F+ K +G + S +GFN K+N + GI+P F T L + +LLPK + H L
Sbjct: 18 LQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDHVL 77
Query: 81 KIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGDAPWKDSRIESDAHTR 140
K +GG++G++ YD TK D + F+G + L + ++ + + R
Sbjct: 78 KGKIGGMVGSIFYDGTKKFEDGSVAYNLFGYYDGFMGVYTNILQTDSLETQNMKHNKNVR 137
Query: 141 NYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRAL 200
NYV ++YL Y+Y + F +K GRYLS M + SG TQGF++ + L WFSS+GRA
Sbjct: 138 NYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQVSGQY-KHARLTWFSSWGRAF 196
Query: 201 AAGQWIRDWYAPIVTEDG-------------RKDVDYGIHAVQLYFSNKHVQATPFFYFS 247
A G ++ DW+A T G + V YG HAVQL + F+Y S
Sbjct: 197 AYGSFLMDWFAARTTYSGGFTKNNNGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYYLS 256
Query: 248 PKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVY-----AKDLYDVVWR-NSKIGEW 301
P+ + APG+KI DSNP F G G RS T I FP+Y K V+R ++ +
Sbjct: 257 PQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYRYDTPATQN 316
Query: 302 GASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTAD 361
G +L+I QRFD N +N +Y+ F NAN IG GNP + SNS+Y A+ D
Sbjct: 317 GQNLIIRQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGTALKRD 376
Query: 362 SVSGYVFGGGVY--RGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVS 419
+ + ++ GG + + F W +Y+ + + E + LGY++ + S V+L YY V
Sbjct: 377 AATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVH 436
Query: 420 MHTGYKVNDLTSPFNKAFKANTQDRSNLMVSV 451
+ G+K + P K F A DRS L ++
Sbjct: 437 TNKGFKPGE-NGPVPKNFPALYSDRSALYTAL 467
>ref|NP_223156.1| Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 188 bits (478), Expect = 2e-49
Identities = 158/548 (28%), Positives = 233/548 (41%), Gaps = 124/548 (22%)
Query: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA 60
+LK LPLLF + L A Y+ G +FSKVGFN S +N +GI+PT TFV
Sbjct: 12 LLKRLTLPLLFTT-----GSLGAVTYEVHGDFINFSKVGFNRSPINPVKGIYPTETFVNL 66
Query: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTK----------------------- 97
T KL+ +L + VGG+LG YD+T+
Sbjct: 67 TGKLEGSVHL------GRGWTVNVGGVLGGQVYDNTRYDRWAKDFTPPSYWDKTSCGTDS 120
Query: 98 -TLIDQAT----HQVYGSEL------FFFIGRWWGYLGDAPWKDSRIESDAHTRNYVLYN 146
+L AT Q G + + ++G W G + + + H+R Y +Y
Sbjct: 121 LSLCMNATKMWQQQGPGGIIDPRGIGYMYMGEWNGLFPN--YYPANAYLPGHSRRYEVYK 178
Query: 147 SYLFYSYGDKFHLKLGRY----LSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRALAA 202
+ L Y D+ H+ +GR+ MD++ QGF +K+ + FSS+GR +A
Sbjct: 179 ANLTYD-SDRVHMVMGRFDVTEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSSWGRGIAD 237
Query: 203 GQWIRDWYAPIVTEDGRKDVDYGIH-AVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHID 261
GQW+ Y ++ +GIH A +Y K++ P+ Y P PG KI D
Sbjct: 238 GQWLFPIY---------REKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYD 288
Query: 262 SNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEW-------------------- 301
+NP+F G G+R++T V LYD W N++ G +
Sbjct: 289 TNPEFSGRGIRNKTTFYV--------LYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGL 340
Query: 302 ----GASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSN---SIYGLVF 354
GA+L +H D N + G Y N GN N +G +GNP+ D IY L F
Sbjct: 341 QGPGGATLYLHHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVALDGIEQWVGGIYSLGF 400
Query: 355 S---NAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDV 411
+ N AD+ + YV GGG + F W + R+T A RA E I ++L Y++ +
Sbjct: 401 AGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGL 460
Query: 412 NLQYYEVSMHTGYK-----VNDLTSPFN--------KAF-----------KANTQDRSNL 447
L + E + GY + P N AF K+ TQDRS+L
Sbjct: 461 KLVWLEFQIRAGYNPGTGFLGPNGQPLNLNNGLFESSAFAQGPQNMGGIAKSITQDRSHL 520
Query: 448 MVSVKFFF 455
M + + F
Sbjct: 521 MTHISYSF 528
>ref|NP_223157.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 465
Score = 186 bits (472), Expect = 1e-48
Identities = 139/466 (29%), Positives = 219/466 (46%), Gaps = 36/466 (7%)
Query: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDS 68
LLF + ++ F+ G S++K GFN+ + + I+PT ++ + +L +
Sbjct: 14 LLFSGLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 73
Query: 69 NLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELF-FFIGRWWGYLGDAP 127
L L+ VG ++ AL YDST + + GS F G +W Y+G
Sbjct: 74 GLYK------GLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIG--- 124
Query: 128 WKDSRIESDAHT-RNYVLYNSYLFYSYG-DKFH--LKLGRY-LSNMDFMSGYTQGFELDY 182
W + R +++N++L Y+Y DKF +K GRY D+ + YTQG E
Sbjct: 125 WYAGHSGLNVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFV 184
Query: 183 KINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATP 242
K L+ S RA A+ W WY G+ + L + +++ P
Sbjct: 185 KYKDT-RLRVMYSDARASASSDWF--WYFGRYYTSGK-----ALMIADLKYEKDNLKINP 236
Query: 243 FFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYD---VVWRNSKIG 299
+FY + APGI I D+NP F G R FP++A ++++ +G
Sbjct: 237 YFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLG 296
Query: 300 EWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVT 359
+ G + RF N++ FG Y+N GNAN IG YG+P+ ++I +NSIY +N V
Sbjct: 297 KSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVG 356
Query: 360 ADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSF-ASVDVNLQYYEV 418
AD ++G+++ G YRGF W ILGR+T + RA ERS+ L L Y + +D+ L+YY
Sbjct: 357 ADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGN 416
Query: 419 SMHTGYKVN--------DLTSPFNKAFKANT-QDRSNLMVSVKFFF 455
GY + D P + N DRS++M ++ + F
Sbjct: 417 ITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGF 462
>ref|NP_223120.1| putative [Helicobacter pylori J99]
Length = 416
Score = 37.0 bits (84), Expect = 0.001
Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 46/252 (18%)
Query: 146 NSYLFYSYGDKFHLKLGRYLSNM---DFMSGYTQGFELDYKINSKIALKWFSSF------ 196
++YL Y+ +F + LGR+ ++ D++ G QG + +K NS +++F F
Sbjct: 116 DAYLQYA-NQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNS---MRYFGIFMDSMLY 171
Query: 197 ---------GRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFS 247
G +A Y P+ R V + + + NK++ PF
Sbjct: 172 NGHQINKEQGNRIATSLNALASYDPV---SKRLYVGGEVFVLGAEYKNKNLIFVPFILTD 228
Query: 248 PKT-YEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLL 306
+ + + + ++ + T ++ +Y D+ G + L
Sbjct: 229 TRLPLPTQNVLVQVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDITTSAKNAGLF----L 284
Query: 307 IHQRFDCNEFNFGFGYY-----QNFG---NANARIGWYGNPIPFDIRSNSIYGLVFSNAV 358
I Q F FNFG G+Y N G N R +YG I + + + F+N+
Sbjct: 285 IDQTFKYKIFNFGTGFYIVPARNNKGYLWTFNDRTKFYGR----GINAPGVPAIYFANS- 339
Query: 359 TADSVSGYVFGG 370
S+SGYVF G
Sbjct: 340 ---SISGYVFLG 348
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 35.0 bits (79), Expect = 0.004
Identities = 32/148 (21%), Positives = 61/148 (40%), Gaps = 17/148 (11%)
Query: 145 YNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSS----FGRAL 200
+ YLFY YG +G + M+ + G +DY N + SS G AL
Sbjct: 212 FRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLFNFIDNAQKHSSVGFYVGFAL 271
Query: 201 AAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHI 260
A W+ V++ +D+ + Y ++ + F+ P + G+++++
Sbjct: 272 AGSSWVGSGLGMWVSQ-----MDF----INNYLTDYRAKMHTSFFQIPLNF---GVRVNV 319
Query: 261 DSNPKFRGLGLRSQTLINVIFPVYAKDL 288
D + F +GL+ +N + + K L
Sbjct: 320 DRHNGFE-MGLKIPLAVNSFYETHGKGL 346
Score = 25.0 bits (53), Expect = 4.1
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 24/176 (13%)
Query: 301 WGASLLI-HQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIP-FDIRSNSIYGL------ 352
+G L + ++ F + N GF YY + G+ GN +N +YGL
Sbjct: 192 YGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLF 251
Query: 353 -VFSNAVTADSVSGYVFGGGVYRGFLW------------GILGRYTYATRASERSINLHL 399
NA SV YV G G W + Y RA + +
Sbjct: 252 NFIDNAQKHSSVGFYV--GFALAGSSWVGSGLGMWVSQMDFINNYLTDYRAKMHTSFFQI 309
Query: 400 GYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAFKANTQDRSNLMVSVKFFF 455
+G +VD + +E+ + VN K A+ + +M +V + +
Sbjct: 310 PLNFGVRVNVDRH-NGFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVMFNVSYVY 364
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 35.0 bits (79), Expect = 0.004
Identities = 32/148 (21%), Positives = 61/148 (40%), Gaps = 17/148 (11%)
Query: 145 YNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSS----FGRAL 200
+ YLFY YG +G + M+ + G +DY N + SS G AL
Sbjct: 217 FRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLFNFIDNAQKHSSVGFYVGFAL 276
Query: 201 AAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHI 260
A W+ V++ +D+ + Y ++ + F+ P + G+++++
Sbjct: 277 AGSSWVGSGLGMWVSQ-----MDF----INNYLTDYRAKMHTSFFQIPLNF---GVRVNV 324
Query: 261 DSNPKFRGLGLRSQTLINVIFPVYAKDL 288
D + F +GL+ +N + + K L
Sbjct: 325 DRHNGFE-MGLKIPLAVNSFYETHGKGL 351
Score = 25.0 bits (53), Expect = 4.1
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 24/176 (13%)
Query: 301 WGASLLI-HQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIP-FDIRSNSIYGL------ 352
+G L + ++ F + N GF YY + G+ GN +N +YGL
Sbjct: 197 YGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLF 256
Query: 353 -VFSNAVTADSVSGYVFGGGVYRGFLW------------GILGRYTYATRASERSINLHL 399
NA SV YV G G W + Y RA + +
Sbjct: 257 NFIDNAQKHSSVGFYV--GFALAGSSWVGSGLGMWVSQMDFINNYLTDYRAKMHTSFFQI 314
Query: 400 GYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAFKANTQDRSNLMVSVKFFF 455
+G +VD + +E+ + VN K A+ + +M +V + +
Sbjct: 315 PLNFGVRVNVDRH-NGFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVMFNVSYVY 369
>ref|NP_223495.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 587
Score = 28.9 bits (63), Expect = 0.28
Identities = 28/102 (27%), Positives = 36/102 (34%), Gaps = 20/102 (19%)
Query: 312 DCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTADSVSGYVFGGG 371
D N F G Y I + P P D G+ SN T + Y F
Sbjct: 496 DTNTFRLGVTYMGKSLRLMGAIDYDQAPSPQDA-----IGIPDSNGYTVAFGTKYNF--- 547
Query: 372 VYRGFLWGILGRYTYATRASE----------RSINLHLGYRW 403
RGF G+ G +T+ + S R + LGYRW
Sbjct: 548 --RGFDLGVAGSFTFKSNRSSLYQSPTIGQLRIFSASLGYRW 587
>ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
J99]
Length = 356
Score = 28.9 bits (63), Expect = 0.28
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 150 FYSYGDKFHLKLGRYLSNM---DFMSGYTQGFELDYKINSKIALKWFSSF 196
FY Y K LK + + + +F+S YT G L K N +IAL S+
Sbjct: 83 FYEYAQKLSLKSLKNIDEVMLAEFLSIYTGGLSLATKKNYRIALLGLFSY 132
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 27.7 bits (60), Expect = 0.63
Identities = 29/146 (19%), Positives = 63/146 (42%), Gaps = 17/146 (11%)
Query: 293 WRNSKIGEWGASLLIHQRFDCNEFNFGFGYY-------QNFGNANARIGWYGNPIPFDIR 345
++++ + +GA + +++F ++ N G YY NFG+ N ++G N + + +
Sbjct: 308 YQSASMNGFGAKMG-YKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVG--ANLVTYGVG 364
Query: 346 SNSIYGLVFSNAVTADSVSGYVFGGGVYRGFLW-----GILGRYTYATRASERSINLHLG 400
++ +Y V+ + + + +F G G W +L ++S LG
Sbjct: 365 TDFLYN-VYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSGQRPDVKSSSFQFLFDLG 423
Query: 401 YRWGSFASVDVNLQYYEVSMHTGYKV 426
R +FA + N + + G K+
Sbjct: 424 VR-TNFAKTNFNKHRLDQGIEFGVKI 448
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 25.8 bits (55), Expect = 2.4
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 322 YYQNFGNANARIGWYGNPIPFDIRSNSIYGLV-FSNAVTADSVSGYVFG 369
Y N GN N I +Y N I F +++ FS T + S VFG
Sbjct: 1084 YNNNLGNLNNTIYYYDNSIDFYASGKTLFTKAEFSQTFTGQN-SAIVFG 1131
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 25.0 bits (53), Expect = 4.1
Identities = 14/44 (31%), Positives = 27/44 (60%), Gaps = 3/44 (6%)
Query: 12 VSILYNQSPLLAFDYKFSGVA--ESFSKV-GFNHSKLNSKEGIF 52
VS+L N PL+ + K GVA E+F+++ + ++++G+F
Sbjct: 20 VSVLVNGLPLVHVELKKRGVAIREAFNQIKRYKRDSFSAEDGLF 63
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 24.6 bits (52), Expect = 5.3
Identities = 23/88 (26%), Positives = 37/88 (41%), Gaps = 4/88 (4%)
Query: 351 GLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVD 410
GLV + AV A V G G ++ ++G + S+ + + SF
Sbjct: 67 GLVRNQAVKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFEQQS 126
Query: 411 VNLQYYEVSMHTGYKVNDLTSPFNKAFK 438
+ +E TG KV DL +P++K K
Sbjct: 127 TKTEMFE----TGIKVIDLLAPYSKGGK 150
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 24.6 bits (52), Expect = 5.3
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 136 DAHTRNYVLYNSYLFY-SYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFS 194
+ + +N Y+ Y F+ YG+ +NM F G F + Y N +W
Sbjct: 55 EVNPKNDWAYSRYYFFIDYGNVLFNNDSTLQANM-FTYGVGGDFMVAYAKNP--INRWAF 111
Query: 195 SFGRALAAGQWI 206
FG LAA WI
Sbjct: 112 FFGLQLAANTWI 123
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 23.9 bits (50), Expect = 9.1
Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 141 NYVLYNSYLFYSYGDKFHLKLGRYLSNMD 169
+Y+L+N ++ +YG HL++ +L N +
Sbjct: 165 SYLLFN-WIHPAYGYSIHLEISTFLQNQE 192
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 23.9 bits (50), Expect = 9.1
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 352 LVFSNAVTADSVSGYVFGG-GVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVD 410
++FS++++ + YV G GV G+ W + G+RWG F +
Sbjct: 78 IIFSDSLSPVFKNSYVSNGLGVQVGYKW-----------VGKHEETKWFGFRWGLFYDLS 126
Query: 411 VNL 413
+L
Sbjct: 127 ASL 129
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,735
Number of Sequences: 1491
Number of extensions: 23972
Number of successful extensions: 107
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 25
length of query: 455
length of database: 494,079
effective HSP length: 81
effective length of query: 374
effective length of database: 373,308
effective search space: 139617192
effective search space used: 139617192
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)