BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645402|ref|NP_207576.1| hypothetical protein
[Helicobacter pylori 26695]
(165 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223438.1| putative [Helicobacter pylori J99] 318 6e-89
ref|NP_223971.1| putative [Helicobacter pylori J99] 31 0.015
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 29 0.074
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 27 0.37
ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99] 26 0.48
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 25 0.82
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 25 1.1
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 24 1.8
ref|NP_224023.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 23 3.1
ref|NP_223357.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacte... 23 4.1
ref|NP_223820.1| putative Outer membrane function [Helicoba... 23 5.3
ref|NP_223657.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [... 23 5.3
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 23 5.3
ref|NP_223297.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 23 5.3
ref|NP_224062.1| putative [Helicobacter pylori J99] 22 9.1
ref|NP_223875.1| putative [Helicobacter pylori J99] 22 9.1
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 22 9.1
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 22 9.1
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 22 9.1
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 22 9.1
>ref|NP_223438.1| putative [Helicobacter pylori J99]
Length = 175
Score = 318 bits (814), Expect = 6e-89
Identities = 160/164 (97%), Positives = 163/164 (98%)
Query: 2 ALPFYFVSALAAIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLH 61
ALPFYFVSALAAIDIDEVTEAQANS+KLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLH
Sbjct: 12 ALPFYFVSALAAIDIDEVTEAQANSIKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLH 71
Query: 62 EKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQIDK 121
EKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGE IKKALG+PVFPQDALDAALQIDK
Sbjct: 72 EKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGEAIKKALGDPVFPQDALDAALQIDK 131
Query: 122 QLDSFKQDNLIDVKPLKDVLAQLEAELRKAINFQKQWLNSTKPN 165
QLDSFKQDNLIDVKPLKDVLAQLEAELRKAI+FQKQWLNSTKPN
Sbjct: 132 QLDSFKQDNLIDVKPLKDVLAQLEAELRKAIDFQKQWLNSTKPN 175
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 31.2 bits (69), Expect = 0.015
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 86 DHQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKDVLAQLE 145
D Q + + + + K + +DAL L ++K+L++ K L D + LK QL+
Sbjct: 209 DFQAYKAMRLKKIKNKLQSQIQAKEDALKTFLPLEKRLETLKSRFLCDKENLKSCANQLQ 268
Query: 146 AELRKAINFQKQWLNSTKPN 165
+ A+ + + L + K N
Sbjct: 269 QRYQNALIERDKELKNAKNN 288
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 28.9 bits (63), Expect = 0.074
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 76 KDKENNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLDSFKQD--NLID 133
KD + + Q + E+G+TI + GE L+AA+ +D + +D N ++
Sbjct: 328 KDNKEPEKYEKSQNTTNYEVGKTISEIKGE-FGTLVRLNAAVVVDGKYKIALEDGANALE 386
Query: 134 VKPLKD-VLAQLEAELRKAINFQK 156
+PL D L ++ A +++AI + +
Sbjct: 387 YEPLSDESLKKINALVKQAIGYNQ 410
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 265
Score = 26.6 bits (57), Expect = 0.37
Identities = 26/87 (29%), Positives = 44/87 (49%), Gaps = 16/87 (18%)
Query: 53 HLKDLNDLHEKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKKA-----LGEPV 107
H KD N +HE ++ +RL + ++ P L Q ++ + + + A L EP+
Sbjct: 105 HPKDKNKIHEVLRLMRL----ENLSQQKIPKLSGGQ-AQRVALARALIAAKNLLLLDEPL 159
Query: 108 FPQDALDAALQIDKQ---LDSFKQDNL 131
+ALD AL+ + Q LD K++NL
Sbjct: 160 ---NALDNALKNEVQQGLLDFIKRENL 183
>ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99]
Length = 604
Score = 26.2 bits (56), Expect = 0.48
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 12 AAIDIDEVTEAQANSVKLS--------DQLVSLSDKLLEKAVDRGRN-TDHLKDL--NDL 60
A+ D + + +AN VKL D L + DK KA ++GR + +K+L L
Sbjct: 475 ASFDYEPIENREANLVKLDVRVAGDVVDALSIIIDK--NKAYEKGRALVETMKELIPRQL 532
Query: 61 HEKIKHL----RLILEPKPKDKENNPNLKDHQGS--------ETIEIGETIKKALGEPVF 108
E ++I K N K + G E + G+ KA+G+
Sbjct: 533 FEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVEL 592
Query: 109 PQDALDAALQID 120
PQ+A A L+ID
Sbjct: 593 PQEAFLAILKID 604
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 25.4 bits (54), Expect = 0.82
Identities = 28/120 (23%), Positives = 53/120 (43%), Gaps = 20/120 (16%)
Query: 13 AIDIDEVTEAQANSVKLSDQ--LVSLSDK--LLEKAVDRGRNTD---------------H 53
AID+ EVT A+A + +Q + + DK ++ +++ +N D
Sbjct: 2 AIDLAEVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQ 61
Query: 54 LKDLNDLHEKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKKALGEPVFPQDAL 113
L + E K ++ + +KE N +LKD QG+ + E + K + + + +AL
Sbjct: 62 LTQVEMQEENKKTMQEVASAMKSNKETNESLKDFQGA-LKDTMENLNKGMDDSLKANNAL 120
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 25.0 bits (53), Expect = 1.1
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 8 VSALAAIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGR-NTDHLKD-LN-DLHEKI 64
+SA +DE + + N+ K L + D LE ++R R ++ K LN L +
Sbjct: 308 LSATRQFALDERSLFEPNNAK---DLSAKIDWWLENKLERERMQNEYAKSALNYTLENSV 364
Query: 65 KHLRLILEPKPKDKENNPNL 84
+ + E KD +NNPNL
Sbjct: 365 IQIEKVYEEAIKDFKNNPNL 384
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 24.3 bits (51), Expect = 1.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 43 KAVDRGRNTDHLKDLNDLHEKI 64
+AV +NT LK+LND +E++
Sbjct: 35 EAVQMVKNTGELKNLNDKYEQL 56
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 23.9 bits (50), Expect = 2.4
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 27/96 (28%)
Query: 70 ILEPKPKDKENNPNLKD-----HQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLD 124
+L + K++ P + D + E IE E KK + + Q+ LQI+K +
Sbjct: 16 VLSERKKNRYGFPRIFDVADIEQEEREVIEWRE--KKKASKQSYKQN-----LQINKIAN 68
Query: 125 SFKQDNLIDVK---------------PLKDVLAQLE 145
K+D ++D + P KD+L QLE
Sbjct: 69 DLKRDKIVDKRTILSVIDADIERGFIPPKDLLKQLE 104
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 23.5 bits (49), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 37 SDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLRLILEPK 74
S ++L D T+ K+L DL E +K+++ PK
Sbjct: 178 SAEILGACFDERFKTEIAKELQDLKELVKNIKSDFIPK 215
>ref|NP_223357.1| putative [Helicobacter pylori J99]
Length = 342
Score = 23.1 bits (48), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 36 LSDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLRL 69
+ +LE+++ + + LK+LN L EK K RL
Sbjct: 110 IQSPILEQSIQQKISQIPLKNLNALLEKFKPTRL 143
>ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 405
Score = 23.1 bits (48), Expect = 4.1
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 14 IDIDEVTEAQANSVKLSDQLVSL 36
+D+D +TEA K++ L++L
Sbjct: 191 LDLDPITEASQKVAKIAKSLIAL 213
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 22.7 bits (47), Expect = 5.3
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 43 KAVDRGRNTDHLKDLNDLHEKIKHL 67
+AV + +N D ++ L+D++E++ L
Sbjct: 36 EAVQKVKNADKVQKLSDVYEQLSKL 60
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 22.7 bits (47), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 110 QDALDAALQIDKQLDSFKQDNLIDVKP 136
+D LDA L+I ++D K ++ID P
Sbjct: 235 KDCLDALLRIYPRIDMNKIHSIIDNTP 261
>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
Length = 1085
Score = 22.7 bits (47), Expect = 5.3
Identities = 11/26 (42%), Positives = 18/26 (68%)
Query: 21 EAQANSVKLSDQLVSLSDKLLEKAVD 46
E+ +S+++S + L DK LEKAV+
Sbjct: 738 ESVTHSLEISPKNPLLIDKFLEKAVE 763
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 22.7 bits (47), Expect = 5.3
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 43 KAVDRGRNTDHLKDLNDLHEKI 64
+AV +NT LK+LN+ +E++
Sbjct: 35 EAVQMVKNTGELKNLNEKYEQL 56
>ref|NP_223297.1| putative [Helicobacter pylori J99]
Length = 137
Score = 22.7 bits (47), Expect = 5.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 77 DKENNPNLKDHQGSETIEIGETIKKALGEPV 107
D E +PNLK H+ S+ + K + E V
Sbjct: 69 DLEKSPNLKSHKKSDKKFYKQLAKNNIAEGV 99
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 22.7 bits (47), Expect = 5.3
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 37 SDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLRLILEPKPKD 77
S L EK + + L N + EKI + ++EP KD
Sbjct: 30 SSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKD 70
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 21.9 bits (45), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 70 ILEPKPKDKENNPNLKDHQGSETIEIGETIK 100
I+ PKP K P + H G + EI + +K
Sbjct: 90 IITPKPPKK--TPKEESHNGDKLHEIKQELK 118
>ref|NP_223875.1| putative [Helicobacter pylori J99]
Length = 183
Score = 21.9 bits (45), Expect = 9.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 58 NDLHEKIKHLR 68
N++HEKIKH +
Sbjct: 145 NEVHEKIKHYK 155
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 21.9 bits (45), Expect = 9.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 55 KDLNDLHEKIKHLRLILEPKPKDKEN 80
K L +H + H L+LEP K+N
Sbjct: 148 KRLKPIHATLDHKPLLLEPLEIYKQN 173
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 21.9 bits (45), Expect = 9.1
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 15/53 (28%)
Query: 16 IDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLR 68
IDEV + + + L QL+SL+D +K DL E+I+ +R
Sbjct: 389 IDEVLKIEFLELALGYQLISLAD---------------MKQGGDLLERIRGIR 426
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 21.9 bits (45), Expect = 9.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 55 KDLNDLHEKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKK 101
K+ + HE I+ +ILEP LKD+ E +++ I K
Sbjct: 338 KNAQEAHEAIRPTSIILEPNA--------LKDYLKPEELKLYTLIYK 376
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 21.9 bits (45), Expect = 9.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 43 KAVDRGRNTDHLKDLNDLHEKIKHL 67
+A +NT LK L+D +E + +L
Sbjct: 32 EAAQMVKNTGELKKLSDTYENLSNL 56
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,691
Number of Sequences: 1491
Number of extensions: 8080
Number of successful extensions: 43
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 24
length of query: 165
length of database: 494,079
effective HSP length: 71
effective length of query: 94
effective length of database: 388,218
effective search space: 36492492
effective search space used: 36492492
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)